Wall clock time and date at job start Tue Mar 31 2020 08:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48500 * 109.46740 * 60.00439 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00072 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46633 * 126.56261 * 359.68954 * 13 11 10 15 15 C 1.50782 * 107.70123 * 179.87839 * 14 13 11 16 16 C 1.38442 * 131.19891 * 180.09039 * 15 14 13 17 17 C 1.38150 * 120.10164 * 180.32759 * 16 15 14 18 18 C 1.38256 * 119.95916 * 359.97438 * 17 16 15 19 19 N 1.48015 * 120.01775 * 179.97438 * 18 17 16 20 20 O 1.21798 * 120.00259 * 359.97438 * 19 18 17 21 21 O 1.21810 * 119.99874 * 180.02562 * 19 18 17 22 22 C 1.38152 * 119.96253 * 359.95087 * 18 17 16 23 23 C 1.38058 * 108.86081 * 0.39390 * 15 14 13 24 24 C 1.46628 * 126.56248 * 179.97438 * 13 11 10 25 25 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 27 27 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 28 28 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 29 29 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 30 30 H 1.08997 * 109.81780 * 299.56658 * 14 13 11 31 31 H 1.09007 * 109.81230 * 60.47037 * 14 13 11 32 32 H 1.07996 * 119.95290 * 0.35495 * 16 15 14 33 33 H 1.07995 * 120.02028 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.94558 * 180.02562 * 22 18 17 35 35 H 1.08996 * 109.81659 * 299.53157 * 24 13 11 36 36 H 1.09004 * 109.81274 * 60.43780 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 8 0.2789 -4.9672 -0.0054 13 7 2.1655 -6.1344 -0.0062 14 6 3.6222 -6.3020 -0.0129 15 6 3.9135 -7.7814 -0.0093 16 6 5.1118 -8.4749 -0.0113 17 6 5.1128 -9.8564 -0.0138 18 6 3.9154 -10.5477 -0.0139 19 7 3.9150 -12.0278 -0.0172 20 8 4.9696 -12.6372 -0.0203 21 8 2.8599 -12.6365 -0.0177 22 6 2.7194 -9.8561 -0.0104 23 6 2.7179 -8.4717 -0.0100 24 6 1.5823 -7.4797 -0.0076 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5576 0.8880 28 1 2.8718 -3.6051 0.8873 29 1 2.8719 -3.6036 -0.8927 30 1 4.0429 -5.8427 -0.9074 31 1 4.0513 -5.8409 0.8768 32 1 6.0472 -7.9351 -0.0104 33 1 6.0482 -10.3960 -0.0149 34 1 1.7843 -10.3964 -0.0100 35 1 0.9720 -7.6188 0.8847 36 1 0.9708 -7.6164 -0.8995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330070168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:04 Heat of formation + Delta-G solvation = -28.765348 kcal Electronic energy + Delta-G solvation = -21583.112425 eV Core-core repulsion = 18034.761578 eV Total energy + Delta-G solvation = -3548.350847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -43.32465 -41.96746 -40.24761 -37.73008 -37.50018 -35.59192 -33.39778 -33.19677 -32.46398 -29.51961 -28.70188 -27.14919 -25.78518 -23.66070 -23.00024 -22.69256 -20.54066 -20.00644 -19.74582 -18.82481 -18.65363 -17.83636 -17.48369 -17.26192 -16.49896 -16.07435 -15.96625 -15.74715 -15.38632 -14.79887 -14.30700 -14.24034 -14.09126 -13.90272 -13.64042 -13.28436 -13.07719 -12.85063 -12.78763 -12.47842 -12.43419 -12.34022 -12.29188 -11.93930 -11.64616 -11.29127 -10.94290 -10.76237 -10.56846 -10.39511 -9.62535 -8.17690 -6.31382 -1.33526 -0.18889 0.17918 0.28066 1.44020 1.44877 1.55451 1.57836 1.68110 2.09808 2.43513 2.79086 3.02338 3.16309 3.43740 3.62448 3.71840 3.94619 3.99718 4.27501 4.34311 4.39968 4.43931 4.48790 4.59051 4.60593 4.61608 4.66220 4.92967 5.02184 5.07680 5.19223 5.36362 5.51372 5.62243 5.85430 6.16631 6.27776 6.42071 6.87437 7.08406 7.39304 8.95222 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045372 B = 0.002614 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.968928 B =10708.466288 C =11294.330647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.249 1.249 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.039 3.961 10 C -0.109 4.109 11 C 0.537 3.463 12 O -0.580 6.580 13 N -0.623 5.623 14 C 0.130 3.870 15 C -0.040 4.040 16 C -0.075 4.075 17 C -0.041 4.041 18 C -0.059 4.059 19 N 0.032 4.968 20 O -0.159 6.159 21 O -0.197 6.197 22 C -0.034 4.034 23 C -0.108 4.108 24 C 0.146 3.854 25 H 0.262 0.738 26 H -0.018 1.018 27 H -0.017 1.017 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.195 -19.189 -0.033 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.796 3.204 4 H -0.172 1.172 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.099 0.901 9 C 0.001 3.999 10 C -0.148 4.148 11 C 0.329 3.671 12 O -0.459 6.459 13 N -0.358 5.358 14 C 0.009 3.991 15 C -0.041 4.041 16 C -0.093 4.093 17 C -0.060 4.060 18 C -0.142 4.142 19 N 0.547 4.453 20 O -0.378 6.378 21 O -0.405 6.405 22 C -0.054 4.054 23 C -0.109 4.109 24 C 0.023 3.977 25 H 0.071 0.929 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.213 0.787 33 H 0.198 0.802 34 H 0.174 0.826 35 H 0.100 0.900 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.298 -18.296 -0.029 23.849 hybrid contribution -0.767 0.196 -0.001 0.792 sum 14.531 -18.100 -0.030 23.211 Atomic orbital electron populations 1.70181 1.08367 1.27716 1.51667 1.26135 0.95675 1.03984 0.94779 0.85291 0.79509 0.78190 0.77361 1.17234 1.20921 1.20910 1.21731 0.94141 0.91323 1.50399 0.90143 1.18739 0.93811 0.92526 0.94823 1.21642 0.99201 0.88619 1.05370 1.21108 0.87264 0.84753 0.74018 1.90699 1.16521 1.87360 1.51290 1.48040 1.08361 1.04668 1.74773 1.20776 0.80114 0.91749 1.06456 1.20975 0.93871 0.95938 0.93287 1.20887 0.98738 0.91468 0.98195 1.21354 0.97095 0.94737 0.92805 1.21024 0.97816 0.77936 1.17394 1.43843 1.00117 1.04423 0.96878 1.94511 1.20622 1.69701 1.52928 1.94567 1.20838 1.69919 1.55190 1.20177 0.98020 0.92677 0.94510 1.19989 0.96253 0.92189 1.02469 1.20149 0.93976 0.80114 1.03447 0.92935 0.99916 0.99906 0.87078 0.87079 0.86109 0.86134 0.78749 0.80198 0.82597 0.89956 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 13.29 21.45 0.28 -57.90 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 9 C 0.04 2.04 4.26 29.85 0.13 2.16 16 10 C -0.11 -3.90 4.89 29.85 0.15 -3.75 16 11 C 0.54 19.13 7.87 87.66 0.69 19.82 16 12 O -0.58 -27.21 16.35 -3.03 -0.05 -27.26 16 13 N -0.62 -15.21 3.34 -829.51 -2.77 -17.98 16 14 C 0.13 1.75 6.54 85.63 0.56 2.31 16 15 C -0.04 -0.46 6.22 -19.83 -0.12 -0.58 16 16 C -0.07 -0.47 10.05 22.30 0.22 -0.24 16 17 C -0.04 -0.39 9.56 22.25 0.21 -0.18 16 18 C -0.06 -0.94 6.85 36.36 0.25 -0.69 16 19 N 0.03 0.69 4.45 -46.50 -0.21 0.48 16 20 O -0.16 -3.45 18.45 18.89 0.35 -3.10 16 21 O -0.20 -4.85 18.45 18.87 0.35 -4.50 16 22 C -0.03 -0.55 9.56 22.30 0.21 -0.33 16 23 C -0.11 -1.71 6.22 -19.83 -0.12 -1.83 16 24 C 0.15 3.14 6.91 85.64 0.59 3.73 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 27 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 28 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.20 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.18 0.98 7.61 -2.91 -0.02 0.96 16 34 H 0.16 2.38 7.61 -2.91 -0.02 2.36 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -79.08 323.05 4.55 -74.53 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: 1.10 Total: -0.55 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 3.46 Total: -8.35 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -2.69 Total: -75.40 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: 0.65 Total: -34.86 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -79.08 4.55 -74.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330070168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.769 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds