Wall clock time and date at job start Tue Mar 31 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00355 * 2 1 4 4 H 1.48499 * 109.47198 * 270.00481 * 3 2 1 5 5 H 1.48507 * 109.46632 * 30.00052 * 3 2 1 6 6 H 1.48496 * 109.47009 * 149.99924 * 3 2 1 7 7 C 1.37885 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99618 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99818 * 275.59796 * 10 9 7 12 12 O 1.21569 * 120.00381 * 185.57611 * 11 10 9 13 13 C 1.47842 * 119.99929 * 5.56989 * 11 10 9 14 14 N 1.34554 * 126.05442 * 354.98101 * 13 11 10 15 15 C 1.30866 * 107.27381 * 179.86533 * 14 13 11 16 16 N 1.34593 * 107.62490 * 0.38947 * 15 14 13 17 17 H 0.96996 * 125.74821 * 179.78745 * 16 15 14 18 18 N 1.28845 * 108.50528 * 359.75102 * 16 15 14 19 19 C 1.39947 * 120.00196 * 95.59888 * 10 9 7 20 20 C 1.38871 * 120.04866 * 172.73477 * 19 10 9 21 21 C 1.38107 * 119.94968 * 180.29730 * 20 19 10 22 22 C 1.38475 * 120.04916 * 359.44654 * 21 20 19 23 23 F 1.35100 * 119.95061 * 180.25838 * 22 21 20 24 24 C 1.38474 * 120.09480 * 0.55325 * 22 21 20 25 25 C 1.38107 * 120.04359 * 359.72556 * 24 22 21 26 26 H 0.97000 * 120.00169 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47557 * 59.99771 * 9 7 2 28 28 H 1.09003 * 109.47289 * 299.99749 * 9 7 2 29 29 H 1.07998 * 126.19209 * 180.09973 * 15 14 13 30 30 H 1.08001 * 120.02059 * 0.02562 * 20 19 10 31 31 H 1.08004 * 119.97159 * 179.72327 * 21 20 19 32 32 H 1.08002 * 119.97854 * 179.70455 * 24 22 21 33 33 H 1.08005 * 120.02049 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 2.7283 -4.0504 -1.1629 12 8 3.4383 -5.0371 -1.1753 13 6 2.4410 -3.3305 -2.4218 14 7 1.6013 -2.2889 -2.5646 15 6 1.6284 -1.9379 -3.8250 16 7 2.4768 -2.7670 -4.4608 17 1 2.6912 -2.7423 -5.4065 18 7 2.9568 -3.5986 -3.6016 19 6 2.5669 -4.2220 1.2047 20 6 3.3485 -5.3699 1.1959 21 6 3.7013 -5.9729 2.3872 22 6 3.2859 -5.4274 3.5903 23 9 3.6366 -6.0160 4.7546 24 6 2.5066 -4.2828 3.6014 25 6 2.1467 -3.6798 2.4122 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 1.0675 -1.1320 -4.2748 30 1 3.6764 -5.7931 0.2580 31 1 4.3054 -6.8682 2.3806 32 1 2.1796 -3.8616 4.5406 33 1 1.5384 -2.7873 2.4213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340822929.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:19 Heat of formation + Delta-G solvation = 72.785136 kcal Electronic energy + Delta-G solvation = -22713.502854 eV Core-core repulsion = 19078.388013 eV Total energy + Delta-G solvation = -3635.114841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -48.42922 -43.03159 -40.13238 -37.65330 -35.32283 -33.03400 -32.53842 -31.06418 -30.60509 -29.11613 -27.22358 -24.54789 -23.43759 -22.68668 -22.06296 -21.37394 -19.42129 -18.34059 -17.25016 -16.81020 -16.72641 -16.32921 -15.77307 -15.23561 -15.15161 -14.83639 -14.42019 -14.25538 -13.90796 -13.52720 -13.06011 -12.66214 -12.46849 -12.24112 -12.04431 -11.87092 -11.26745 -11.00818 -10.82356 -10.74124 -10.27304 -10.20063 -10.02914 -9.46693 -9.34855 -9.05704 -9.03174 -8.62669 -8.42532 -7.21348 -6.08727 -4.10285 1.40157 1.74607 1.91862 2.65020 2.84852 3.23294 3.31337 3.35457 3.48446 3.78613 4.25775 4.37185 4.53295 4.78305 4.99014 5.12420 5.27153 5.28916 5.32142 5.79431 5.83501 6.03184 6.29501 6.39481 6.61659 6.64623 6.71291 6.79795 6.83028 7.05503 7.22892 7.43980 7.69883 7.79289 7.98559 8.11838 8.36356 8.67048 8.88868 9.51429 10.99558 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.006656 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.707949 B = 4205.770618 C = 5861.354141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.219 3.781 10 N -0.515 5.515 11 C 0.617 3.383 12 O -0.525 6.525 13 C 0.154 3.846 14 N -0.407 5.407 15 C 0.177 3.823 16 N -0.410 5.410 17 H 0.444 0.556 18 N -0.264 5.264 19 C 0.162 3.838 20 C -0.153 4.153 21 C -0.136 4.136 22 C 0.052 3.948 23 F -0.152 7.152 24 C -0.133 4.133 25 C -0.114 4.114 26 H 0.261 0.739 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.222 0.778 30 H 0.188 0.812 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -4.598 -4.708 6.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.101 3.899 10 N -0.233 5.233 11 C 0.404 3.596 12 O -0.403 6.403 13 C -0.126 4.126 14 N -0.131 5.131 15 C -0.120 4.120 16 N -0.133 5.133 17 H 0.290 0.710 18 N -0.104 5.104 19 C 0.066 3.934 20 C -0.173 4.173 21 C -0.156 4.156 22 C 0.032 3.968 23 F -0.131 7.131 24 C -0.153 4.153 25 C -0.134 4.134 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.239 0.761 30 H 0.204 0.796 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.030 -5.321 -4.409 7.202 hybrid contribution 0.504 1.536 -0.553 1.709 sum 2.534 -3.785 -4.962 6.736 Atomic orbital electron populations 1.69910 1.05694 1.26701 1.50257 1.24692 0.94626 0.98363 0.95039 0.86671 0.79978 0.83761 0.77994 1.20890 1.21213 1.20098 1.21087 0.92778 0.89998 1.50897 0.92920 1.20244 0.87391 0.81481 1.00766 1.45823 1.41632 1.33191 1.02652 1.16416 0.79414 0.82310 0.81489 1.90363 1.39057 1.25747 1.85109 1.23385 0.99105 0.97102 0.92981 1.72122 1.17912 1.09521 1.13540 1.26929 0.96484 0.99012 0.89597 1.45316 1.32848 1.23241 1.11873 0.71027 1.74241 1.21022 1.15172 0.99973 1.18066 0.96636 0.92939 0.85796 1.22672 0.98532 0.95075 1.00989 1.21039 1.02373 1.01273 0.90898 1.17733 1.02406 0.95445 0.81210 1.91424 1.90919 1.83668 1.47113 1.20858 0.99928 0.95445 0.99061 1.21010 1.01735 1.01086 0.89595 0.92874 0.89882 0.94081 0.76140 0.79612 0.85302 0.84994 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.29 13.29 55.43 0.74 -22.55 16 2 C 0.08 1.92 5.46 -17.82 -0.10 1.82 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -12.84 7.99 -34.44 -0.28 -13.12 16 8 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.22 5.12 4.20 -5.19 -0.02 5.10 16 10 N -0.51 -11.19 2.70 -115.77 -0.31 -11.51 16 11 C 0.62 13.36 7.58 -12.33 -0.09 13.27 16 12 O -0.53 -11.48 13.49 5.31 0.07 -11.41 16 13 C 0.15 3.12 7.57 -156.35 -1.18 1.94 16 14 N -0.41 -8.00 6.99 -12.37 -0.09 -8.09 16 15 C 0.18 2.50 13.14 -90.48 -1.19 1.31 16 16 N -0.41 -5.11 6.93 29.56 0.20 -4.90 16 17 H 0.44 3.21 8.96 -190.22 -1.71 1.50 16 18 N -0.26 -4.61 12.30 32.07 0.39 -4.22 16 19 C 0.16 3.28 6.49 -83.68 -0.54 2.74 16 20 C -0.15 -2.88 9.05 -39.39 -0.36 -3.24 16 21 C -0.14 -2.27 10.02 -39.54 -0.40 -2.67 16 22 C 0.05 0.88 7.30 -39.41 -0.29 0.59 16 23 F -0.15 -2.48 17.26 2.25 0.04 -2.45 16 24 C -0.13 -2.23 10.02 -39.54 -0.40 -2.63 16 25 C -0.11 -2.15 9.16 -39.39 -0.36 -2.51 16 26 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.08 2.03 5.62 -51.93 -0.29 1.74 16 28 H 0.04 0.99 6.21 -51.93 -0.32 0.67 16 29 H 0.22 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.19 3.65 4.53 -56.23 -0.25 3.39 16 31 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 33 H 0.15 2.95 6.24 -52.48 -0.33 2.62 16 LS Contribution 293.65 15.07 4.43 4.43 Total: -1.00 -30.76 293.65 -8.46 -39.23 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.71 Total: 3.66 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -5.20 Total: 2.61 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.94 Total: -51.27 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.76 -8.46 -39.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340822929.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.012 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds