Wall clock time and date at job start Tue Mar 31 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00355 * 2 1 4 4 H 1.48499 * 109.47198 * 270.00481 * 3 2 1 5 5 H 1.48507 * 109.46632 * 30.00052 * 3 2 1 6 6 H 1.48496 * 109.47009 * 149.99924 * 3 2 1 7 7 C 1.37885 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99618 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99818 * 275.59796 * 10 9 7 12 12 O 1.21569 * 120.00381 * 185.57611 * 11 10 9 13 13 C 1.47842 * 119.99929 * 5.56989 * 11 10 9 14 14 N 1.34554 * 126.05442 * 354.98101 * 13 11 10 15 15 C 1.30866 * 107.27381 * 179.86533 * 14 13 11 16 16 N 1.34593 * 107.62490 * 0.38947 * 15 14 13 17 17 H 0.96996 * 125.74821 * 179.78745 * 16 15 14 18 18 N 1.28845 * 108.50528 * 359.75102 * 16 15 14 19 19 C 1.39947 * 120.00196 * 95.59888 * 10 9 7 20 20 C 1.38871 * 120.04866 * 172.73477 * 19 10 9 21 21 C 1.38107 * 119.94968 * 180.29730 * 20 19 10 22 22 C 1.38475 * 120.04916 * 359.44654 * 21 20 19 23 23 F 1.35100 * 119.95061 * 180.25838 * 22 21 20 24 24 C 1.38474 * 120.09480 * 0.55325 * 22 21 20 25 25 C 1.38107 * 120.04359 * 359.72556 * 24 22 21 26 26 H 0.97000 * 120.00169 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47557 * 59.99771 * 9 7 2 28 28 H 1.09003 * 109.47289 * 299.99749 * 9 7 2 29 29 H 1.07998 * 126.19209 * 180.09973 * 15 14 13 30 30 H 1.08001 * 120.02059 * 0.02562 * 20 19 10 31 31 H 1.08004 * 119.97159 * 179.72327 * 21 20 19 32 32 H 1.08002 * 119.97854 * 179.70455 * 24 22 21 33 33 H 1.08005 * 120.02049 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 2.7283 -4.0504 -1.1629 12 8 3.4383 -5.0371 -1.1753 13 6 2.4410 -3.3305 -2.4218 14 7 1.6013 -2.2889 -2.5646 15 6 1.6284 -1.9379 -3.8250 16 7 2.4768 -2.7670 -4.4608 17 1 2.6912 -2.7423 -5.4065 18 7 2.9568 -3.5986 -3.6016 19 6 2.5669 -4.2220 1.2047 20 6 3.3485 -5.3699 1.1959 21 6 3.7013 -5.9729 2.3872 22 6 3.2859 -5.4274 3.5903 23 9 3.6366 -6.0160 4.7546 24 6 2.5066 -4.2828 3.6014 25 6 2.1467 -3.6798 2.4122 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 1.0675 -1.1320 -4.2748 30 1 3.6764 -5.7931 0.2580 31 1 4.3054 -6.8682 2.3806 32 1 2.1796 -3.8616 4.5406 33 1 1.5384 -2.7873 2.4213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340822929.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:19 Heat of formation + Delta-G solvation = 55.470821 kcal Electronic energy + Delta-G solvation = -22714.253660 eV Core-core repulsion = 19078.388013 eV Total energy + Delta-G solvation = -3635.865646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.76768 -44.30909 -41.68827 -39.14120 -36.96977 -34.45756 -34.32925 -32.38407 -32.01696 -30.62126 -29.02106 -26.02832 -25.17371 -24.04436 -23.43164 -22.82473 -20.87322 -19.59178 -18.68818 -18.58799 -18.32420 -17.83284 -17.18033 -16.61516 -16.50498 -16.44236 -15.95816 -15.84510 -15.35405 -14.97272 -14.52208 -14.27425 -14.06302 -13.78932 -13.55036 -13.42972 -12.87959 -12.80920 -12.48841 -12.20410 -12.05767 -11.87025 -11.54024 -10.93418 -10.74154 -10.64345 -10.61755 -10.32911 -10.02718 -8.76879 -8.02672 -6.09742 -0.05996 0.33369 0.56000 1.33500 1.42503 1.47206 1.53791 1.60057 2.20628 2.30477 2.50006 2.79479 3.10744 3.30200 3.39021 3.65834 3.87999 3.98791 4.12749 4.33424 4.40406 4.51912 4.94235 4.98143 5.12285 5.25568 5.26377 5.28325 5.39169 5.56830 5.76355 5.84568 6.08266 6.14600 6.22577 6.31445 6.84979 6.96764 7.26222 7.53825 9.04529 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.006656 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.707949 B = 4205.770618 C = 5861.354141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.031 0.969 9 C 0.237 3.763 10 N -0.521 5.521 11 C 0.607 3.393 12 O -0.539 6.539 13 C 0.123 3.877 14 N -0.458 5.458 15 C 0.195 3.805 16 N -0.379 5.379 17 H 0.469 0.531 18 N -0.271 5.271 19 C 0.135 3.865 20 C -0.160 4.160 21 C -0.126 4.126 22 C 0.056 3.944 23 F -0.145 7.145 24 C -0.124 4.124 25 C -0.124 4.124 26 H 0.264 0.736 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.268 0.732 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -4.206 -5.191 6.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.157 4.157 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.049 0.951 9 C 0.119 3.881 10 N -0.240 5.240 11 C 0.395 3.605 12 O -0.417 6.417 13 C -0.156 4.156 14 N -0.183 5.183 15 C -0.102 4.102 16 N -0.105 5.105 17 H 0.320 0.680 18 N -0.113 5.113 19 C 0.039 3.961 20 C -0.180 4.180 21 C -0.146 4.146 22 C 0.036 3.964 23 F -0.124 7.124 24 C -0.143 4.143 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.284 0.716 30 H 0.195 0.805 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.450 -4.936 -4.920 7.387 hybrid contribution 0.401 1.367 -0.455 1.496 sum 2.851 -3.568 -5.375 7.054 Atomic orbital electron populations 1.69983 1.06544 1.27339 1.50946 1.25173 0.95195 1.00515 0.94824 0.85884 0.78435 0.80901 0.78227 1.19896 1.20808 1.21085 1.21023 0.91615 0.91100 1.50718 0.95074 1.19867 0.87295 0.81463 0.99519 1.45749 1.41710 1.33044 1.03455 1.16744 0.79232 0.82426 0.82107 1.90340 1.39630 1.26232 1.85534 1.23153 1.00951 0.98320 0.93152 1.71970 1.19187 1.10393 1.16762 1.27633 0.95485 0.98858 0.88214 1.45244 1.31252 1.21488 1.12558 0.67972 1.74138 1.21200 1.16179 0.99810 1.18395 0.97974 0.93952 0.85762 1.22585 0.98849 0.94936 1.01586 1.21273 1.01637 1.01668 0.89984 1.17753 1.01949 0.95250 0.81453 1.91449 1.90778 1.83485 1.46653 1.21074 0.98921 0.95050 0.99252 1.20946 1.02304 1.01115 0.90085 0.92710 0.90758 0.95460 0.71650 0.80463 0.82464 0.82362 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.74 13.29 21.45 0.28 -47.45 16 2 C 0.04 2.21 5.46 84.66 0.46 2.67 16 3 Si 0.94 41.19 29.54 68.60 2.03 43.22 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.51 -26.03 7.99 25.60 0.20 -25.83 16 8 H 0.03 1.71 7.81 -2.91 -0.02 1.69 16 9 C 0.24 11.48 4.20 85.63 0.36 11.84 16 10 N -0.52 -23.53 2.70 -638.46 -1.72 -25.25 16 11 C 0.61 27.18 7.58 86.79 0.66 27.84 16 12 O -0.54 -24.27 13.49 -3.93 -0.05 -24.33 16 13 C 0.12 5.04 7.57 137.11 1.04 6.07 16 14 N -0.46 -17.91 6.99 -193.04 -1.35 -19.26 16 15 C 0.20 5.07 13.14 180.30 2.37 7.44 16 16 N -0.38 -8.61 6.93 -60.38 -0.42 -9.03 16 17 H 0.47 5.31 8.96 -219.80 -1.97 3.34 16 18 N -0.27 -9.27 12.30 -52.45 -0.65 -9.91 16 19 C 0.13 5.60 6.49 38.15 0.25 5.85 16 20 C -0.16 -6.05 9.05 22.39 0.20 -5.85 16 21 C -0.13 -4.03 10.02 22.30 0.22 -3.81 16 22 C 0.06 1.78 7.30 22.38 0.16 1.94 16 23 F -0.14 -4.34 17.26 44.97 0.78 -3.56 16 24 C -0.12 -3.99 10.02 22.30 0.22 -3.77 16 25 C -0.12 -4.75 9.16 22.39 0.21 -4.54 16 26 H 0.26 13.21 8.31 -92.71 -0.77 12.43 16 27 H 0.07 3.76 5.62 -2.39 -0.01 3.74 16 28 H 0.03 1.38 6.21 -2.39 -0.01 1.36 16 29 H 0.27 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.18 7.10 4.53 -62.19 -0.28 6.82 16 31 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.14 5.59 6.24 -2.91 -0.02 5.57 16 Total: -1.00 -67.18 293.65 4.21 -62.97 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -1.04 Total: 12.75 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.36 Total: 19.85 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.85 Total: -110.90 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -67.18 4.21 -62.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340822929.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.438 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds