Wall clock time and date at job start Tue Mar 31 2020 08:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47107 * 300.00173 * 3 2 1 6 6 H 1.48496 * 109.46973 * 60.00016 * 3 2 1 7 7 C 1.37873 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99977 * 185.08125 * 7 2 1 9 9 C 1.50703 * 120.00281 * 5.09028 * 7 2 1 10 10 H 1.08998 * 109.47061 * 185.76548 * 9 7 2 11 11 C 1.50700 * 109.46558 * 305.76103 * 9 7 2 12 12 O 1.21285 * 119.99607 * 120.00443 * 11 9 7 13 13 N 1.34770 * 120.00484 * 299.99797 * 11 9 7 14 14 N 1.40097 * 120.00364 * 180.02562 * 13 11 9 15 15 C 1.47093 * 125.56205 * 105.00367 * 14 13 11 16 16 C 1.54094 * 103.77893 * 180.02562 * 15 14 13 17 17 O 1.45698 * 104.00467 * 359.97438 * 16 15 14 18 18 C 1.33774 * 109.48166 * 359.73150 * 17 16 15 19 19 O 1.21511 * 123.07310 * 180.28983 * 18 17 16 20 20 C 1.50695 * 109.47376 * 65.76078 * 9 7 2 21 21 C 1.38237 * 119.99738 * 355.08349 * 20 9 7 22 22 C 1.38237 * 119.99493 * 179.97438 * 21 20 9 23 23 C 1.38231 * 120.00288 * 359.95426 * 22 21 20 24 24 C 1.38233 * 120.00197 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99939 * 175.05528 * 20 9 7 26 26 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 27 27 H 0.97008 * 119.99853 * 0.02562 * 13 11 9 28 28 H 1.09007 * 110.56043 * 298.57106 * 15 14 13 29 29 H 1.09000 * 110.56755 * 61.42388 * 15 14 13 30 30 H 1.09002 * 110.51983 * 118.62702 * 16 15 14 31 31 H 1.08995 * 110.52000 * 241.22750 * 16 15 14 32 32 H 1.07997 * 120.00386 * 359.97438 * 21 20 9 33 33 H 1.08009 * 119.99485 * 179.97438 * 22 21 20 34 34 H 1.08003 * 119.99912 * 179.72203 * 23 22 21 35 35 H 1.07997 * 120.00130 * 179.97438 * 24 23 22 36 36 H 1.07995 * 120.00203 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1169 10 1 1.9507 -3.3274 0.0030 11 6 0.1996 -2.5662 0.9561 12 8 -0.9692 -2.6736 0.6505 13 7 0.5540 -2.5094 2.2551 14 7 -0.4276 -2.5748 3.2526 15 6 -0.7075 -3.7425 4.1021 16 6 -1.8632 -3.2704 5.0055 17 8 -2.1102 -1.9005 4.5752 18 6 -1.2604 -1.5815 3.5925 19 8 -1.2478 -0.4921 3.0545 20 6 0.6012 -2.5805 -1.4718 21 6 0.6627 -1.5040 -2.3369 22 6 0.0629 -1.5813 -3.5800 23 6 -0.5975 -2.7352 -3.9583 24 6 -0.6586 -3.8118 -3.0934 25 6 -0.0600 -3.7341 -1.8498 26 1 -0.4850 0.8400 0.0004 27 1 1.4888 -2.4233 2.4995 28 1 -1.0195 -4.5920 3.4945 29 1 0.1666 -3.9990 4.7006 30 1 -2.7482 -3.8866 4.8470 31 1 -1.5639 -3.2957 6.0533 32 1 1.1793 -0.6027 -2.0416 33 1 0.1107 -0.7400 -4.2557 34 1 -1.0699 -2.7938 -4.9278 35 1 -1.1749 -4.7131 -3.3888 36 1 -0.1080 -4.5750 -1.1739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470151219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:12 Heat of formation + Delta-G solvation = -26.994485 kcal Electronic energy + Delta-G solvation = -23798.575504 eV Core-core repulsion = 20250.301447 eV Total energy + Delta-G solvation = -3548.274056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 15.87 seconds Orbital eigenvalues (eV) -41.08867 -38.91199 -37.51772 -36.49132 -35.02004 -33.71220 -31.58124 -30.87086 -29.67911 -28.87123 -27.15996 -24.06994 -23.43502 -22.14725 -21.28019 -20.38968 -19.39310 -17.90287 -17.16426 -16.69355 -16.39899 -15.88810 -15.23094 -14.84010 -14.65634 -14.20640 -14.01048 -13.80182 -13.71745 -13.12963 -12.95672 -12.65443 -12.41222 -12.30126 -12.15770 -11.95718 -11.37688 -10.92725 -10.71938 -10.41199 -10.40518 -10.12927 -10.07899 -9.81083 -9.42274 -9.08348 -8.63775 -8.44375 -8.19424 -7.80582 -7.47534 -6.11788 -4.29147 2.02996 2.48869 2.57265 3.25084 3.32182 3.34475 3.38001 3.59891 4.03185 4.22719 4.34751 4.70186 4.85534 5.04527 5.06794 5.13766 5.33393 5.51067 5.76350 5.79786 5.88840 5.99320 6.25215 6.40114 6.56403 6.69468 6.80185 7.03354 7.17322 7.44948 7.56218 7.60344 7.71274 7.77472 7.77952 8.08593 8.22691 8.36492 8.68278 8.75213 9.37978 9.64345 10.88287 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.007190 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.106595 B = 3893.307712 C = 5096.893839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.074 3.926 10 H 0.062 0.938 11 C 0.556 3.444 12 O -0.525 6.525 13 N -0.489 5.489 14 N -0.433 5.433 15 C 0.070 3.930 16 C 0.045 3.955 17 O -0.331 6.331 18 C 0.638 3.362 19 O -0.478 6.478 20 C -0.021 4.021 21 C -0.055 4.055 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.114 4.114 26 H 0.270 0.730 27 H 0.414 0.586 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -9.632 5.904 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.050 3.950 10 H 0.080 0.920 11 C 0.345 3.655 12 O -0.396 6.396 13 N -0.243 5.243 14 N -0.269 5.269 15 C -0.054 4.054 16 C -0.031 4.031 17 O -0.241 6.241 18 C 0.390 3.610 19 O -0.357 6.357 20 C -0.022 4.022 21 C -0.073 4.073 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.132 4.132 26 H 0.081 0.919 27 H 0.254 0.746 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.191 -8.820 5.493 10.392 hybrid contribution 0.624 0.908 0.280 1.137 sum 0.815 -7.912 5.774 9.828 Atomic orbital electron populations 1.69985 1.05206 1.27686 1.42395 1.25065 0.94929 0.99433 0.94241 0.86600 0.80069 0.83912 0.78029 1.19482 1.20678 1.20787 1.20708 0.93428 0.88517 1.56832 0.91050 1.17793 0.91478 0.98963 0.86721 0.92041 1.21938 0.91342 0.71605 0.80578 1.90567 1.20228 1.48028 1.80808 1.45118 1.01632 1.79866 0.97645 1.46322 1.34526 1.12279 1.33792 1.22839 0.98703 0.90568 0.93305 1.24148 0.98769 0.80723 0.99411 1.87337 1.54885 1.31045 1.50804 1.18480 0.78436 0.85002 0.79101 1.91165 1.70148 1.21450 1.52958 1.19787 0.95065 0.92155 0.95236 1.21456 0.95900 0.98783 0.91120 1.21089 1.00746 0.97254 0.97538 1.20815 1.01563 0.94503 0.98993 1.20773 1.02021 0.98231 0.95128 1.20875 0.98648 0.98157 0.95546 0.91890 0.74552 0.89331 0.89272 0.87899 0.87842 0.84382 0.87849 0.88019 0.87935 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.22 10.41 55.43 0.58 -22.64 16 2 C 0.07 1.89 3.19 -17.82 -0.06 1.84 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.56 -13.48 7.62 -34.44 -0.26 -13.74 16 8 H 0.07 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.07 1.69 2.67 -94.08 -0.25 1.44 16 10 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 11 C 0.56 13.24 5.44 -10.99 -0.06 13.18 16 12 O -0.53 -14.47 15.40 5.55 0.09 -14.39 16 13 N -0.49 -9.97 6.12 31.22 0.19 -9.78 16 14 N -0.43 -8.11 3.34 -64.72 -0.22 -8.33 16 15 C 0.07 0.81 7.93 -3.15 -0.02 0.79 16 16 C 0.05 0.47 8.23 37.73 0.31 0.78 16 17 O -0.33 -5.80 11.09 -37.84 -0.42 -6.22 16 18 C 0.64 13.96 8.82 53.71 0.47 14.43 16 19 O -0.48 -13.12 17.92 -19.12 -0.34 -13.46 16 20 C -0.02 -0.50 4.50 -104.63 -0.47 -0.97 16 21 C -0.05 -1.30 8.00 -39.58 -0.32 -1.62 16 22 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 23 C -0.14 -2.74 10.05 -39.59 -0.40 -3.14 16 24 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 25 C -0.11 -2.46 8.73 -39.58 -0.35 -2.80 16 26 H 0.27 7.77 8.31 -40.82 -0.34 7.44 16 27 H 0.41 7.35 8.72 -182.59 -1.59 5.75 16 28 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 3.46 4.97 -52.49 -0.26 3.20 16 33 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -35.84 313.19 -7.83 -43.67 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.20 Total: 7.56 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.20 Total: 3.43 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.55 Total: -40.75 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.68 Total: -34.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.84 -7.83 -43.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470151219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.673 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.87 seconds