Wall clock time and date at job start Tue Mar 31 2020 08:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47107 * 300.00173 * 3 2 1 6 6 H 1.48496 * 109.46973 * 60.00016 * 3 2 1 7 7 C 1.37873 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99977 * 185.08125 * 7 2 1 9 9 C 1.50703 * 120.00281 * 5.09028 * 7 2 1 10 10 H 1.08998 * 109.47061 * 185.76548 * 9 7 2 11 11 C 1.50700 * 109.46558 * 305.76103 * 9 7 2 12 12 O 1.21285 * 119.99607 * 120.00443 * 11 9 7 13 13 N 1.34770 * 120.00484 * 299.99797 * 11 9 7 14 14 N 1.40097 * 120.00364 * 180.02562 * 13 11 9 15 15 C 1.47093 * 125.56205 * 105.00367 * 14 13 11 16 16 C 1.54094 * 103.77893 * 180.02562 * 15 14 13 17 17 O 1.45698 * 104.00467 * 359.97438 * 16 15 14 18 18 C 1.33774 * 109.48166 * 359.73150 * 17 16 15 19 19 O 1.21511 * 123.07310 * 180.28983 * 18 17 16 20 20 C 1.50695 * 109.47376 * 65.76078 * 9 7 2 21 21 C 1.38237 * 119.99738 * 355.08349 * 20 9 7 22 22 C 1.38237 * 119.99493 * 179.97438 * 21 20 9 23 23 C 1.38231 * 120.00288 * 359.95426 * 22 21 20 24 24 C 1.38233 * 120.00197 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99939 * 175.05528 * 20 9 7 26 26 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 27 27 H 0.97008 * 119.99853 * 0.02562 * 13 11 9 28 28 H 1.09007 * 110.56043 * 298.57106 * 15 14 13 29 29 H 1.09000 * 110.56755 * 61.42388 * 15 14 13 30 30 H 1.09002 * 110.51983 * 118.62702 * 16 15 14 31 31 H 1.08995 * 110.52000 * 241.22750 * 16 15 14 32 32 H 1.07997 * 120.00386 * 359.97438 * 21 20 9 33 33 H 1.08009 * 119.99485 * 179.97438 * 22 21 20 34 34 H 1.08003 * 119.99912 * 179.72203 * 23 22 21 35 35 H 1.07997 * 120.00130 * 179.97438 * 24 23 22 36 36 H 1.07995 * 120.00203 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1169 10 1 1.9507 -3.3274 0.0030 11 6 0.1996 -2.5662 0.9561 12 8 -0.9692 -2.6736 0.6505 13 7 0.5540 -2.5094 2.2551 14 7 -0.4276 -2.5748 3.2526 15 6 -0.7075 -3.7425 4.1021 16 6 -1.8632 -3.2704 5.0055 17 8 -2.1102 -1.9005 4.5752 18 6 -1.2604 -1.5815 3.5925 19 8 -1.2478 -0.4921 3.0545 20 6 0.6012 -2.5805 -1.4718 21 6 0.6627 -1.5040 -2.3369 22 6 0.0629 -1.5813 -3.5800 23 6 -0.5975 -2.7352 -3.9583 24 6 -0.6586 -3.8118 -3.0934 25 6 -0.0600 -3.7341 -1.8498 26 1 -0.4850 0.8400 0.0004 27 1 1.4888 -2.4233 2.4995 28 1 -1.0195 -4.5920 3.4945 29 1 0.1666 -3.9990 4.7006 30 1 -2.7482 -3.8866 4.8470 31 1 -1.5639 -3.2957 6.0533 32 1 1.1793 -0.6027 -2.0416 33 1 0.1107 -0.7400 -4.2557 34 1 -1.0699 -2.7938 -4.9278 35 1 -1.1749 -4.7131 -3.3888 36 1 -0.1080 -4.5750 -1.1739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470151219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:02 Heat of formation + Delta-G solvation = -52.743021 kcal Electronic energy + Delta-G solvation = -23799.692044 eV Core-core repulsion = 20250.301447 eV Total energy + Delta-G solvation = -3549.390597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.48806 -40.63008 -39.16590 -38.18036 -36.57709 -35.58873 -33.11935 -32.58196 -31.32552 -30.15259 -28.86215 -25.91853 -24.52874 -23.74825 -22.92369 -21.98884 -21.10912 -19.40418 -18.87289 -18.11331 -17.81855 -17.45562 -17.02945 -16.63448 -16.24422 -15.69622 -15.56214 -15.37875 -15.03052 -14.86686 -14.52335 -14.11162 -14.01503 -13.90898 -13.71411 -13.25454 -13.04250 -12.80187 -12.50946 -12.24136 -11.92727 -11.79534 -11.64772 -11.49590 -11.21463 -10.75808 -10.45619 -10.28889 -9.81792 -9.44162 -9.13768 -8.09692 -6.27742 0.54655 0.86287 0.96923 1.37925 1.43565 1.52389 1.71256 2.22805 2.42700 2.47450 3.16116 3.20528 3.30709 3.66082 3.96240 4.05394 4.29502 4.34545 4.47176 4.49500 4.59863 4.67214 4.73505 4.74797 4.96722 4.98801 5.14815 5.40631 5.54472 5.68400 5.84558 5.91098 5.96646 6.04206 6.30931 6.38659 6.50627 6.65895 6.86792 7.06034 7.41225 7.91395 8.87324 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.007190 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.106595 B = 3893.307712 C = 5096.893839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.038 3.962 3 Si 0.934 3.066 4 H -0.249 1.249 5 H -0.285 1.285 6 H -0.302 1.302 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.064 3.936 10 H 0.088 0.912 11 C 0.559 3.441 12 O -0.569 6.569 13 N -0.487 5.487 14 N -0.434 5.434 15 C 0.066 3.934 16 C 0.041 3.959 17 O -0.343 6.343 18 C 0.630 3.370 19 O -0.553 6.553 20 C -0.046 4.046 21 C -0.084 4.084 22 C -0.158 4.158 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.126 4.126 26 H 0.252 0.748 27 H 0.426 0.574 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -12.146 6.443 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.168 4.168 3 Si 0.761 3.239 4 H -0.173 1.173 5 H -0.211 1.211 6 H -0.229 1.229 7 C -0.582 4.582 8 H 0.099 0.901 9 C 0.041 3.959 10 H 0.106 0.894 11 C 0.349 3.651 12 O -0.444 6.444 13 N -0.239 5.239 14 N -0.270 5.270 15 C -0.055 4.055 16 C -0.033 4.033 17 O -0.252 6.252 18 C 0.383 3.617 19 O -0.438 6.438 20 C -0.047 4.047 21 C -0.102 4.102 22 C -0.176 4.176 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.144 4.144 26 H 0.061 0.939 27 H 0.269 0.731 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.778 -11.411 6.087 12.957 hybrid contribution 0.448 1.534 0.190 1.609 sum 1.226 -9.878 6.277 11.768 Atomic orbital electron populations 1.70169 1.06630 1.26600 1.45302 1.25585 0.95080 1.01872 0.94249 0.85860 0.80272 0.81078 0.76670 1.17262 1.21091 1.22907 1.20977 0.93823 0.88909 1.54511 0.90065 1.17940 0.91836 0.99215 0.86867 0.89400 1.21937 0.90683 0.70811 0.81681 1.90529 1.21856 1.50234 1.81804 1.44811 1.02522 1.78821 0.97768 1.46595 1.33415 1.13943 1.33075 1.23366 1.01103 0.88117 0.92867 1.24829 0.99671 0.77328 1.01446 1.87287 1.53647 1.34973 1.49299 1.18810 0.78882 0.84730 0.79284 1.91100 1.72404 1.24566 1.55753 1.19920 0.96343 0.93032 0.95370 1.21409 0.97659 0.98343 0.92779 1.21358 1.00537 0.98744 0.96993 1.21223 1.00469 0.93485 1.00433 1.21211 1.00998 0.99577 0.94225 1.21079 0.98756 0.97877 0.96713 0.93885 0.73133 0.88281 0.84892 0.85248 0.83174 0.86667 0.86192 0.84359 0.84460 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.42 10.41 21.45 0.22 -50.19 16 2 C 0.04 2.01 3.19 84.65 0.27 2.28 16 3 Si 0.93 43.17 29.54 68.60 2.03 45.20 16 4 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 7 C -0.54 -26.45 7.62 25.60 0.19 -26.25 16 8 H 0.08 3.71 7.82 -2.91 -0.02 3.68 16 9 C 0.06 2.95 2.67 -13.03 -0.03 2.91 16 10 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 11 C 0.56 26.80 5.44 87.66 0.48 27.28 16 12 O -0.57 -31.98 15.40 -3.05 -0.05 -32.03 16 13 N -0.49 -19.65 6.12 -173.54 -1.06 -20.72 16 14 N -0.43 -15.89 3.34 -590.39 -1.97 -17.86 16 15 C 0.07 1.33 7.93 86.64 0.69 2.01 16 16 C 0.04 0.70 8.23 72.35 0.60 1.29 16 17 O -0.34 -11.69 11.09 -47.34 -0.52 -12.21 16 18 C 0.63 27.94 8.82 129.91 1.15 29.09 16 19 O -0.55 -31.89 17.92 19.65 0.35 -31.53 16 20 C -0.05 -2.15 4.50 -19.87 -0.09 -2.24 16 21 C -0.08 -4.04 8.00 22.27 0.18 -3.86 16 22 C -0.16 -6.60 10.05 22.27 0.22 -6.38 16 23 C -0.14 -5.08 10.05 22.27 0.22 -4.85 16 24 C -0.14 -5.28 10.05 22.27 0.22 -5.05 16 25 C -0.13 -5.32 8.73 22.27 0.19 -5.12 16 26 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.43 14.79 8.72 -213.31 -1.86 12.93 16 28 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.12 5.98 4.97 -2.91 -0.01 5.97 16 33 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -83.83 313.19 2.55 -81.28 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.74 Total: 26.96 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 4.29 Total: 11.10 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.81 Total: -88.77 kcal Atomic # 8 Polarization: -75.56 SS G_CDS: -0.22 Total: -75.78 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -83.83 2.55 -81.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470151219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.542 kcal (2) G-P(sol) polarization free energy of solvation -83.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds