Wall clock time and date at job start Tue Mar 31 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.50701 * 109.47348 * 239.99829 * 2 1 3 5 5 H 1.08000 * 120.00028 * 236.86519 * 4 2 1 6 6 C 1.37878 * 119.99745 * 56.86220 * 4 2 1 7 7 N 1.31506 * 120.00152 * 5.82035 * 6 4 2 8 8 Si 1.86798 * 119.99852 * 185.82238 * 6 4 2 9 9 H 1.48500 * 109.47569 * 85.02281 * 8 6 4 10 10 H 1.48493 * 109.47131 * 205.02719 * 8 6 4 11 11 H 1.48504 * 109.46939 * 325.02211 * 8 6 4 12 12 C 1.53000 * 109.47119 * 119.99812 * 2 1 3 13 13 O 1.45206 * 109.46934 * 300.00289 * 12 2 1 14 14 C 1.34235 * 116.99701 * 180.02562 * 13 12 2 15 15 O 1.20825 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99881 * 179.97438 * 14 13 12 17 17 S 1.81397 * 109.46997 * 179.97438 * 16 14 13 18 18 O 1.42101 * 108.58027 * 294.48325 * 17 16 14 19 19 O 1.42093 * 108.58013 * 65.51278 * 17 16 14 20 20 C 1.81402 * 101.91950 * 179.97438 * 17 16 14 21 21 C 1.52997 * 117.50203 * 253.74599 * 20 17 16 22 22 C 1.52998 * 117.49758 * 185.08567 * 20 17 16 23 23 H 1.08997 * 109.47128 * 293.83222 * 1 2 3 24 24 H 1.09000 * 109.47068 * 53.82751 * 1 2 3 25 25 H 1.08999 * 109.47121 * 173.82689 * 1 2 3 26 26 H 1.08996 * 109.46921 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46750 * 299.99640 * 3 2 1 28 28 H 1.08996 * 109.46953 * 60.00261 * 3 2 1 29 29 H 0.97001 * 120.00277 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47689 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.47254 * 59.99836 * 12 2 1 32 32 H 1.09000 * 109.46809 * 299.99639 * 16 14 13 33 33 H 1.09002 * 109.46961 * 59.99697 * 16 14 13 34 34 H 1.08999 * 115.55195 * 39.41864 * 20 17 16 35 35 H 1.09007 * 117.49666 * 0.02562 * 21 20 17 36 36 H 1.08998 * 117.50439 * 145.01861 * 21 20 17 37 37 H 1.09010 * 117.49956 * 214.98330 * 22 20 17 38 38 H 1.09002 * 117.50368 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6944 -1.5581 -1.1321 6 6 1.6468 -0.2783 -2.4817 7 7 0.9350 0.8203 -2.6075 8 14 2.1354 -1.2534 -3.9982 9 1 1.1497 -2.3404 -4.2267 10 1 2.1616 -0.3528 -5.1785 11 1 3.4834 -1.8423 -3.7949 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9170 -0.5464 3.6229 15 8 2.6141 -1.5322 3.6707 16 6 1.4530 0.1108 4.8972 17 16 2.1015 -0.8065 6.3215 18 8 1.5151 -2.1008 6.3316 19 8 3.5173 -0.6862 6.3310 20 6 1.4321 0.1428 7.7148 21 6 2.4041 1.0257 8.5001 22 6 1.8689 -0.2661 9.1230 23 1 -0.3633 0.4152 0.9400 24 1 -0.3633 0.6065 -0.8296 25 1 -0.3633 -1.0217 -0.1105 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.6640 1.1245 -3.4878 30 1 3.1300 -0.7217 1.2491 31 1 1.6767 -1.7489 1.2493 32 1 1.8169 1.1377 4.9297 33 1 0.3635 0.1101 4.9305 34 1 0.4118 0.5052 7.5898 35 1 3.4458 1.0365 8.1792 36 1 2.0232 1.9688 8.8919 37 1 1.1360 -0.1723 9.9245 38 1 2.5582 -1.1058 9.2123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518119172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:31 Heat of formation + Delta-G solvation = -130.388359 kcal Electronic energy + Delta-G solvation = -21424.004972 eV Core-core repulsion = 17974.398621 eV Total energy + Delta-G solvation = -3449.606351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20645 -37.61232 -37.01077 -36.86511 -36.11609 -34.97497 -31.51086 -30.77280 -25.79848 -25.68040 -25.11801 -24.00268 -23.07844 -21.27402 -19.02511 -18.92672 -17.98325 -17.24310 -16.69671 -16.64390 -15.88284 -15.71883 -15.37020 -15.26768 -14.66826 -13.86687 -13.76734 -13.19853 -12.85769 -12.66046 -12.35429 -12.18611 -12.04667 -11.93523 -11.60597 -11.59073 -11.54947 -11.34478 -11.23316 -10.99094 -10.79724 -10.74817 -10.57637 -10.48341 -10.20103 -10.00102 -9.48002 -9.39863 -8.81586 -8.40283 -6.06182 -4.16601 -0.37969 2.23838 2.40889 2.65430 2.84883 3.27456 3.33746 3.37294 3.56129 3.85453 4.09829 4.23443 4.34410 4.36283 4.71416 4.72196 5.01221 5.02207 5.08461 5.21081 5.31391 5.46555 5.96735 6.02882 6.38507 6.64140 6.88240 6.92860 7.05122 7.07544 7.32989 7.56759 7.67270 7.85281 7.98232 8.12478 8.33471 8.82907 9.48850 10.95864 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.044084 B = 0.003266 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.999846 B = 8571.728842 C = 8789.486123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.131 4.131 4 C -0.515 4.515 5 H 0.058 0.942 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.079 3.921 13 O -0.335 6.335 14 C 0.484 3.516 15 O -0.508 6.508 16 C -0.629 4.629 17 S 2.479 3.521 18 O -0.915 6.915 19 O -0.916 6.916 20 C -0.680 4.680 21 C -0.127 4.127 22 C -0.123 4.123 23 H 0.016 0.984 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.085 0.915 28 H 0.015 0.985 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 3.537 20.912 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.188 4.188 4 C -0.553 4.553 5 H 0.077 0.923 6 C -0.132 4.132 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.007 3.993 13 O -0.250 6.250 14 C 0.325 3.675 15 O -0.398 6.398 16 C -0.754 4.754 17 S 2.655 3.345 18 O -0.912 6.912 19 O -0.913 6.913 20 C -0.788 4.788 21 C -0.165 4.165 22 C -0.161 4.161 23 H 0.035 0.965 24 H 0.100 0.900 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.179 0.821 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.767 2.636 20.688 20.870 hybrid contribution -0.533 0.236 -1.031 1.185 sum -1.301 2.872 19.657 19.908 Atomic orbital electron populations 1.21766 0.97232 0.99991 0.99713 1.18278 0.93471 0.93135 0.88168 1.21809 0.98255 0.98106 1.00657 1.20917 1.29856 1.14815 0.89756 0.92337 1.24850 0.94842 0.94756 0.98778 1.69843 1.37480 1.21178 1.23457 0.86538 0.79066 0.79887 0.82100 1.20506 1.21204 1.19891 1.23892 0.98725 0.96166 0.80566 1.86505 1.68547 1.55530 1.14452 1.21792 0.77712 0.82003 0.85979 1.90790 1.35706 1.25256 1.88038 1.30600 1.15814 1.17251 1.11756 1.06569 0.75802 0.75872 0.76302 1.93594 1.79413 1.32944 1.85217 1.93581 1.26130 1.86293 1.85300 1.32329 1.12298 1.20814 1.13344 1.22961 0.98343 0.95736 0.99476 1.22808 1.02839 0.99574 0.90871 0.96478 0.90001 0.95389 0.95671 0.89589 0.96576 0.92849 0.91888 0.91863 0.81353 0.81516 0.82089 0.85975 0.86785 0.86631 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.06 37.16 0.30 -2.78 16 2 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 3 C -0.13 -3.11 8.14 37.16 0.30 -2.81 16 4 C -0.52 -13.77 8.01 -34.44 -0.28 -14.04 16 5 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 6 C 0.07 1.86 5.13 -17.82 -0.09 1.77 16 7 N -0.88 -23.81 9.46 55.43 0.52 -23.28 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.08 1.76 4.26 37.16 0.16 1.92 16 13 O -0.34 -6.63 8.77 -39.27 -0.34 -6.97 16 14 C 0.48 8.56 7.98 36.01 0.29 8.84 16 15 O -0.51 -10.56 15.37 -21.37 -0.33 -10.89 16 16 C -0.63 -6.85 6.40 36.01 0.23 -6.62 16 17 S 2.48 28.79 4.35 -107.50 -0.47 28.32 16 18 O -0.91 -14.18 17.95 -59.52 -1.07 -15.25 16 19 O -0.92 -13.51 17.09 -59.54 -1.02 -14.53 16 20 C -0.68 -4.54 6.25 -26.73 -0.17 -4.70 16 21 C -0.13 -0.72 10.12 -26.70 -0.27 -0.99 16 22 C -0.12 -0.74 10.30 -26.70 -0.27 -1.01 16 23 H 0.02 0.36 7.50 -51.93 -0.39 -0.03 16 24 H 0.08 2.09 6.25 -51.93 -0.32 1.77 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 2.21 6.11 -51.93 -0.32 1.90 16 28 H 0.02 0.34 7.68 -51.93 -0.40 -0.06 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.06 1.41 8.13 -51.93 -0.42 0.98 16 31 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.17 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.17 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.16 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.12 0.74 7.57 -51.93 -0.39 0.34 16 36 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -34.70 331.66 -8.21 -42.91 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.59 Total: -2.30 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 0.11 Total: -18.81 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.52 Total: -23.28 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -2.76 Total: -47.63 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 28.79 SS G_CDS: -0.47 Total: 28.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.70 -8.21 -42.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518119172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.483 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds