Wall clock time and date at job start Tue Mar 31 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.50701 * 109.47348 * 239.99829 * 2 1 3 5 5 H 1.08000 * 120.00028 * 236.86519 * 4 2 1 6 6 C 1.37878 * 119.99745 * 56.86220 * 4 2 1 7 7 N 1.31506 * 120.00152 * 5.82035 * 6 4 2 8 8 Si 1.86798 * 119.99852 * 185.82238 * 6 4 2 9 9 H 1.48500 * 109.47569 * 85.02281 * 8 6 4 10 10 H 1.48493 * 109.47131 * 205.02719 * 8 6 4 11 11 H 1.48504 * 109.46939 * 325.02211 * 8 6 4 12 12 C 1.53000 * 109.47119 * 119.99812 * 2 1 3 13 13 O 1.45206 * 109.46934 * 300.00289 * 12 2 1 14 14 C 1.34235 * 116.99701 * 180.02562 * 13 12 2 15 15 O 1.20825 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99881 * 179.97438 * 14 13 12 17 17 S 1.81397 * 109.46997 * 179.97438 * 16 14 13 18 18 O 1.42101 * 108.58027 * 294.48325 * 17 16 14 19 19 O 1.42093 * 108.58013 * 65.51278 * 17 16 14 20 20 C 1.81402 * 101.91950 * 179.97438 * 17 16 14 21 21 C 1.52997 * 117.50203 * 253.74599 * 20 17 16 22 22 C 1.52998 * 117.49758 * 185.08567 * 20 17 16 23 23 H 1.08997 * 109.47128 * 293.83222 * 1 2 3 24 24 H 1.09000 * 109.47068 * 53.82751 * 1 2 3 25 25 H 1.08999 * 109.47121 * 173.82689 * 1 2 3 26 26 H 1.08996 * 109.46921 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46750 * 299.99640 * 3 2 1 28 28 H 1.08996 * 109.46953 * 60.00261 * 3 2 1 29 29 H 0.97001 * 120.00277 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47689 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.47254 * 59.99836 * 12 2 1 32 32 H 1.09000 * 109.46809 * 299.99639 * 16 14 13 33 33 H 1.09002 * 109.46961 * 59.99697 * 16 14 13 34 34 H 1.08999 * 115.55195 * 39.41864 * 20 17 16 35 35 H 1.09007 * 117.49666 * 0.02562 * 21 20 17 36 36 H 1.08998 * 117.50439 * 145.01861 * 21 20 17 37 37 H 1.09010 * 117.49956 * 214.98330 * 22 20 17 38 38 H 1.09002 * 117.50368 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6944 -1.5581 -1.1321 6 6 1.6468 -0.2783 -2.4817 7 7 0.9350 0.8203 -2.6075 8 14 2.1354 -1.2534 -3.9982 9 1 1.1497 -2.3404 -4.2267 10 1 2.1616 -0.3528 -5.1785 11 1 3.4834 -1.8423 -3.7949 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9170 -0.5464 3.6229 15 8 2.6141 -1.5322 3.6707 16 6 1.4530 0.1108 4.8972 17 16 2.1015 -0.8065 6.3215 18 8 1.5151 -2.1008 6.3316 19 8 3.5173 -0.6862 6.3310 20 6 1.4321 0.1428 7.7148 21 6 2.4041 1.0257 8.5001 22 6 1.8689 -0.2661 9.1230 23 1 -0.3633 0.4152 0.9400 24 1 -0.3633 0.6065 -0.8296 25 1 -0.3633 -1.0217 -0.1105 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.6640 1.1245 -3.4878 30 1 3.1300 -0.7217 1.2491 31 1 1.6767 -1.7489 1.2493 32 1 1.8169 1.1377 4.9297 33 1 0.3635 0.1101 4.9305 34 1 0.4118 0.5052 7.5898 35 1 3.4458 1.0365 8.1792 36 1 2.0232 1.9688 8.8919 37 1 1.1360 -0.1723 9.9245 38 1 2.5582 -1.1058 9.2123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518119172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:31 Heat of formation + Delta-G solvation = -154.137976 kcal Electronic energy + Delta-G solvation = -21425.034833 eV Core-core repulsion = 17974.398621 eV Total energy + Delta-G solvation = -3450.636212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 11.49 seconds Orbital eigenvalues (eV) -41.70979 -38.56620 -38.32174 -37.76665 -37.12341 -36.74674 -33.38256 -31.94725 -27.60498 -27.59525 -27.07064 -24.69913 -23.48306 -22.67137 -20.81471 -19.85986 -19.14409 -18.30742 -17.97159 -17.89496 -17.69757 -16.83189 -16.78166 -16.35609 -15.89807 -15.14678 -15.02180 -14.65008 -14.47922 -13.91526 -13.71295 -13.38927 -13.29383 -13.18687 -13.17130 -12.85370 -12.67173 -12.51618 -12.36231 -12.32712 -12.19096 -12.08327 -12.02260 -11.98784 -11.82249 -11.44102 -11.35589 -11.25524 -10.78155 -10.42105 -8.08427 -6.25159 -1.23407 0.86901 1.40380 1.42416 1.46204 1.53799 1.63597 2.23316 2.42485 2.74184 3.09693 3.15634 3.38582 3.52319 3.72791 3.93448 4.00845 4.15044 4.19681 4.22752 4.54414 4.65664 4.73107 4.80342 4.94713 5.01411 5.09824 5.14612 5.18867 5.26261 5.45073 5.60932 5.62482 6.04057 6.12979 6.31788 6.40580 6.78600 7.42567 8.91952 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.044084 B = 0.003266 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.999846 B = 8571.728842 C = 8789.486123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.120 4.120 4 C -0.540 4.540 5 H 0.048 0.952 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.088 3.912 13 O -0.337 6.337 14 C 0.472 3.528 15 O -0.548 6.548 16 C -0.619 4.619 17 S 2.462 3.538 18 O -0.969 6.969 19 O -0.964 6.964 20 C -0.653 4.653 21 C -0.122 4.122 22 C -0.134 4.134 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.211 0.789 33 H 0.210 0.790 34 H 0.203 0.797 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.695 5.287 22.741 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.178 4.178 4 C -0.578 4.578 5 H 0.066 0.934 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.015 3.985 13 O -0.252 6.252 14 C 0.316 3.684 15 O -0.440 6.440 16 C -0.743 4.743 17 S 2.645 3.355 18 O -0.966 6.966 19 O -0.961 6.961 20 C -0.766 4.766 21 C -0.159 4.159 22 C -0.172 4.172 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.228 0.772 33 H 0.228 0.772 34 H 0.220 0.780 35 H 0.131 0.869 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.046 4.354 22.490 22.998 hybrid contribution -0.136 -0.251 -1.466 1.494 sum -2.182 4.103 21.023 21.531 Atomic orbital electron populations 1.21624 0.96766 0.99279 0.99991 1.18297 0.93862 0.93406 0.88410 1.21663 0.97853 0.97713 1.00579 1.21193 1.30260 1.15027 0.91298 0.93356 1.25477 0.94900 0.95540 1.01010 1.69940 1.37753 1.21803 1.24008 0.85676 0.78592 0.78740 0.79240 1.20198 1.20549 1.19983 1.23468 0.98025 0.95618 0.81428 1.86482 1.68703 1.55328 1.14644 1.23030 0.76745 0.81691 0.86954 1.90782 1.37442 1.27216 1.88526 1.30711 1.18489 1.18372 1.06738 1.06596 0.75050 0.76061 0.77752 1.93531 1.79775 1.36986 1.86332 1.93523 1.29190 1.87079 1.86291 1.31899 1.14140 1.20485 1.10038 1.23222 0.97808 0.96854 0.98064 1.23137 1.03500 0.99708 0.90877 0.94320 0.91884 0.96071 0.96130 0.91620 0.94496 0.92725 0.92810 0.92768 0.77176 0.77241 0.78016 0.86934 0.83528 0.83801 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.06 71.98 0.58 -5.03 16 2 C 0.06 2.97 0.58 -52.93 -0.03 2.94 16 3 C -0.12 -5.69 8.14 71.98 0.59 -5.11 16 4 C -0.54 -29.24 8.01 25.60 0.20 -29.03 16 5 H 0.05 2.64 7.75 -2.91 -0.02 2.62 16 6 C 0.03 1.67 5.13 84.66 0.43 2.10 16 7 N -0.90 -48.52 9.46 21.45 0.20 -48.32 16 8 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.09 3.97 4.26 71.98 0.31 4.27 16 13 O -0.34 -12.95 8.77 -51.47 -0.45 -13.40 16 14 C 0.47 16.33 7.98 71.24 0.57 16.90 16 15 O -0.55 -23.40 15.37 24.47 0.38 -23.03 16 16 C -0.62 -11.65 6.40 71.24 0.46 -11.20 16 17 S 2.46 54.76 4.35 -56.49 -0.25 54.51 16 18 O -0.97 -30.56 17.95 -125.75 -2.26 -32.82 16 19 O -0.96 -28.98 17.09 -125.74 -2.15 -31.13 16 20 C -0.65 -6.15 6.25 30.59 0.19 -5.96 16 21 C -0.12 -0.89 10.12 30.62 0.31 -0.58 16 22 C -0.13 -1.17 10.30 30.62 0.32 -0.86 16 23 H 0.04 1.60 7.50 -2.39 -0.02 1.58 16 24 H 0.06 3.21 6.25 -2.39 -0.01 3.19 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 3.38 6.11 -2.39 -0.01 3.36 16 28 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 29 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.05 2.47 8.13 -2.39 -0.02 2.45 16 31 H 0.05 2.49 8.13 -2.39 -0.02 2.47 16 32 H 0.21 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.21 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.20 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.11 1.10 7.57 -2.38 -0.02 1.08 16 36 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.14 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -78.89 331.66 2.47 -76.42 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.05 Total: 4.48 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.92 Total: -31.54 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.20 Total: -48.32 kcal Atomic # 8 Polarization: -95.90 SS G_CDS: -4.48 Total: -100.39 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.25 Total: 54.51 kcal Total: -78.89 2.47 -76.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518119172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.720 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.50 seconds