Wall clock time and date at job start Tue Mar 31 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35238 * 107.86764 * 179.87611 * 11 10 9 13 13 C 1.40428 * 107.86466 * 0.38755 * 12 11 10 14 14 N 1.40068 * 125.97556 * 179.74355 * 13 12 11 15 15 C 1.34770 * 119.99982 * 359.97438 * 14 13 12 16 16 O 1.21554 * 120.00150 * 0.02562 * 15 14 13 17 17 C 1.47968 * 120.00291 * 180.02562 * 15 14 13 18 18 N 1.32814 * 119.75021 * 0.02562 * 17 15 14 19 19 C 1.31437 * 121.66540 * 179.97438 * 18 17 15 20 20 C 1.38669 * 120.98079 * 0.02562 * 19 18 17 21 21 C 1.38460 * 119.39904 * 359.97438 * 20 19 18 22 22 C 1.38947 * 118.46689 * 359.75628 * 21 20 19 23 23 F 1.35104 * 120.50695 * 180.24173 * 22 21 20 24 24 N 1.31236 * 108.04763 * 359.75884 * 13 12 11 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08002 * 126.06761 * 359.97438 * 11 10 9 29 29 H 1.07990 * 126.06731 * 180.15194 * 12 11 10 30 30 H 0.97004 * 119.99973 * 180.02562 * 14 13 12 31 31 H 1.08004 * 119.51097 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.30334 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.76656 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0533 -4.4047 -0.5784 13 6 4.2965 -4.6709 0.5742 14 7 4.2279 -5.8967 1.2484 15 6 4.9301 -6.9545 0.7966 16 8 5.6234 -6.8448 -0.1957 17 6 4.8572 -8.2497 1.5086 18 7 4.0977 -8.3643 2.5921 19 6 4.0048 -9.4966 3.2530 20 6 4.7018 -10.6225 2.8414 21 6 5.5064 -10.5505 1.7169 22 6 5.5825 -9.3433 1.0332 23 9 6.3512 -9.2282 -0.0719 24 7 3.6647 -3.5705 0.9089 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 5.2837 -2.6015 -1.7661 29 1 5.6847 -5.1079 -1.1009 30 1 3.6743 -5.9844 2.0402 31 1 3.3770 -9.5506 4.1302 32 1 4.6172 -11.5474 3.3925 33 1 6.0587 -11.4140 1.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532191357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:41 Heat of formation + Delta-G solvation = 54.051438 kcal Electronic energy + Delta-G solvation = -21464.954453 eV Core-core repulsion = 17829.027258 eV Total energy + Delta-G solvation = -3635.927195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.22540 -40.99391 -40.37907 -38.90412 -34.87998 -33.43857 -32.94306 -31.64096 -31.04012 -29.40941 -27.29269 -25.41125 -23.98969 -22.74364 -21.81232 -20.42957 -19.71243 -18.19646 -17.86748 -17.47152 -17.00471 -16.48580 -16.30746 -15.75904 -15.35641 -15.09516 -14.56581 -14.38873 -14.12303 -13.79041 -13.59378 -13.44290 -13.13887 -12.80837 -12.55242 -12.36305 -12.08378 -11.17677 -10.89049 -10.55207 -10.45936 -10.42735 -10.10507 -9.98760 -9.72458 -9.52024 -9.44444 -8.75483 -8.19652 -7.54275 -6.22112 -4.24535 0.06881 0.55008 2.25175 2.56534 2.79841 3.17387 3.22344 3.24804 3.26075 3.44658 3.67684 3.74706 3.85864 4.16109 4.23993 4.33419 4.38566 4.83404 5.05623 5.13674 5.27275 5.39169 5.44867 5.71536 6.02834 6.15840 6.38231 6.43763 6.52076 6.64674 7.14718 7.26282 7.31985 7.55269 7.81141 8.11961 8.34434 8.55283 8.87866 9.32642 10.90598 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.034060 B = 0.003144 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.883030 B = 8904.489456 C = 9502.676347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.607 5.607 15 C 0.574 3.426 16 O -0.499 6.499 17 C 0.054 3.946 18 N -0.430 5.430 19 C 0.090 3.910 20 C -0.119 4.119 21 C -0.119 4.119 22 C 0.114 3.886 23 F -0.103 7.103 24 N -0.291 5.291 25 H 0.268 0.732 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.422 0.578 31 H 0.174 0.826 32 H 0.152 0.848 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 -20.791 5.387 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.005 3.995 14 N -0.254 5.254 15 C 0.358 3.642 16 O -0.371 6.371 17 C -0.086 4.086 18 N -0.141 5.141 19 C -0.071 4.071 20 C -0.139 4.139 21 C -0.145 4.145 22 C 0.091 3.909 23 F -0.081 7.081 24 N -0.122 5.122 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.259 0.741 31 H 0.191 0.809 32 H 0.170 0.830 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.569 -19.137 5.705 22.594 hybrid contribution 1.040 -0.253 -0.566 1.211 sum 11.609 -19.389 5.139 23.176 Atomic orbital electron populations 1.69875 1.06158 1.27290 1.49159 1.24833 0.94873 0.98793 0.94256 0.86886 0.80232 0.83803 0.79003 1.19694 1.18946 1.20602 1.21116 0.87770 0.95752 1.52668 0.89603 1.20073 0.97489 0.72912 0.98268 1.48658 1.32697 1.10194 1.18389 1.22556 0.95963 0.94612 0.96518 1.21560 1.11495 0.96900 1.01454 1.19063 0.99242 0.86470 0.94772 1.42123 1.46441 1.06717 1.30161 1.17511 0.80425 0.82314 0.83980 1.90802 1.39209 1.82752 1.24327 1.21215 0.97997 0.94078 0.95291 1.67670 1.14505 1.27435 1.04486 1.22961 0.97686 0.87344 0.99072 1.22349 0.95079 1.00810 0.95696 1.21740 1.00089 0.96878 0.95799 1.18614 0.92330 0.94322 0.85625 1.91646 1.71480 1.96307 1.48657 1.77430 1.23368 0.95445 1.15968 0.92178 0.92825 0.94385 0.81243 0.82027 0.74051 0.80935 0.83002 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.23 9.79 -34.44 -0.34 -15.56 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 C 0.23 5.53 5.33 -5.20 -0.03 5.51 16 10 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.64 9.60 -39.83 -0.38 -6.02 16 13 C 0.26 5.36 8.11 -154.46 -1.25 4.11 16 14 N -0.61 -10.47 5.43 -11.96 -0.06 -10.53 16 15 C 0.57 9.32 7.77 -12.28 -0.10 9.22 16 16 O -0.50 -9.18 12.44 5.32 0.07 -9.12 16 17 C 0.05 0.68 6.75 -82.96 -0.56 0.12 16 18 N -0.43 -4.66 9.54 -9.76 -0.09 -4.75 16 19 C 0.09 0.61 11.18 -17.56 -0.20 0.42 16 20 C -0.12 -0.59 10.11 -39.34 -0.40 -0.99 16 21 C -0.12 -0.79 10.16 -39.24 -0.40 -1.19 16 22 C 0.11 1.25 7.32 -38.82 -0.28 0.96 16 23 F -0.10 -1.33 15.55 2.25 0.04 -1.30 16 24 N -0.29 -6.86 12.42 31.43 0.39 -6.47 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 27 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 28 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 29 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 30 H 0.42 6.52 8.15 -40.82 -0.33 6.19 16 31 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.15 0.20 8.06 -52.49 -0.42 -0.23 16 33 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -35.00 301.60 -6.16 -41.16 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.69 Total: 4.93 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.23 Total: -0.53 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.78 Total: -55.27 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.00 -6.16 -41.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532191357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.208 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds