Wall clock time and date at job start Tue Mar 31 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35238 * 107.86764 * 179.87611 * 11 10 9 13 13 C 1.40428 * 107.86466 * 0.38755 * 12 11 10 14 14 N 1.40068 * 125.97556 * 179.74355 * 13 12 11 15 15 C 1.34770 * 119.99982 * 359.97438 * 14 13 12 16 16 O 1.21554 * 120.00150 * 0.02562 * 15 14 13 17 17 C 1.47968 * 120.00291 * 180.02562 * 15 14 13 18 18 N 1.32814 * 119.75021 * 0.02562 * 17 15 14 19 19 C 1.31437 * 121.66540 * 179.97438 * 18 17 15 20 20 C 1.38669 * 120.98079 * 0.02562 * 19 18 17 21 21 C 1.38460 * 119.39904 * 359.97438 * 20 19 18 22 22 C 1.38947 * 118.46689 * 359.75628 * 21 20 19 23 23 F 1.35104 * 120.50695 * 180.24173 * 22 21 20 24 24 N 1.31236 * 108.04763 * 359.75884 * 13 12 11 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08002 * 126.06761 * 359.97438 * 11 10 9 29 29 H 1.07990 * 126.06731 * 180.15194 * 12 11 10 30 30 H 0.97004 * 119.99973 * 180.02562 * 14 13 12 31 31 H 1.08004 * 119.51097 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.30334 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.76656 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0533 -4.4047 -0.5784 13 6 4.2965 -4.6709 0.5742 14 7 4.2279 -5.8967 1.2484 15 6 4.9301 -6.9545 0.7966 16 8 5.6234 -6.8448 -0.1957 17 6 4.8572 -8.2497 1.5086 18 7 4.0977 -8.3643 2.5921 19 6 4.0048 -9.4966 3.2530 20 6 4.7018 -10.6225 2.8414 21 6 5.5064 -10.5505 1.7169 22 6 5.5825 -9.3433 1.0332 23 9 6.3512 -9.2282 -0.0719 24 7 3.6647 -3.5705 0.9089 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 5.2837 -2.6015 -1.7661 29 1 5.6847 -5.1079 -1.1009 30 1 3.6743 -5.9844 2.0402 31 1 3.3770 -9.5506 4.1302 32 1 4.6172 -11.5474 3.3925 33 1 6.0587 -11.4140 1.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532191357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:39 Heat of formation + Delta-G solvation = 28.312172 kcal Electronic energy + Delta-G solvation = -21466.070592 eV Core-core repulsion = 17829.027258 eV Total energy + Delta-G solvation = -3637.043334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -50.08889 -42.36492 -41.42608 -40.08679 -36.37367 -35.26300 -33.83222 -33.05797 -32.13166 -31.03988 -29.09934 -26.41977 -24.79355 -24.33540 -23.12258 -21.96863 -21.17360 -19.22447 -19.13156 -18.68513 -18.35678 -17.92775 -17.24454 -16.97731 -16.64776 -16.46815 -16.05568 -15.51619 -15.30724 -14.92933 -14.83628 -14.47891 -14.43026 -14.19176 -13.90773 -13.82658 -13.48780 -13.01422 -12.66803 -12.22486 -11.82974 -11.74787 -11.55104 -11.35771 -11.04286 -10.88133 -10.76046 -10.20027 -9.83084 -9.17797 -8.37897 -6.48718 -0.69414 -0.03668 0.91942 1.19721 1.37418 1.39403 1.42189 1.49426 2.09498 2.16962 2.28863 2.61835 2.82600 2.94641 2.95763 3.53328 3.57659 3.87275 3.88212 4.16724 4.33089 4.53395 4.57353 4.69449 4.78848 4.84193 4.84611 4.91027 5.05094 5.23160 5.47283 5.78037 5.97529 6.04872 6.38058 6.52414 6.57341 6.82187 6.95953 7.14157 8.79336 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.034060 B = 0.003144 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.883030 B = 8904.489456 C = 9502.676347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.228 1.228 6 H -0.278 1.278 7 C -0.549 4.549 8 H 0.025 0.975 9 C 0.238 3.762 10 N -0.341 5.341 11 C 0.066 3.934 12 C -0.295 4.295 13 C 0.260 3.740 14 N -0.609 5.609 15 C 0.572 3.428 16 O -0.528 6.528 17 C 0.020 3.980 18 N -0.457 5.457 19 C 0.089 3.911 20 C -0.086 4.086 21 C -0.110 4.110 22 C 0.095 3.905 23 F -0.123 7.123 24 N -0.343 5.343 25 H 0.273 0.727 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.216 0.784 29 H 0.169 0.831 30 H 0.427 0.573 31 H 0.208 0.792 32 H 0.205 0.795 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.448 -22.094 6.198 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.151 1.151 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.123 5.123 11 C -0.082 4.082 12 C -0.326 4.326 13 C 0.006 3.994 14 N -0.257 5.257 15 C 0.358 3.642 16 O -0.403 6.403 17 C -0.117 4.117 18 N -0.168 5.168 19 C -0.072 4.072 20 C -0.106 4.106 21 C -0.136 4.136 22 C 0.072 3.928 23 F -0.101 7.101 24 N -0.174 5.174 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.232 0.768 29 H 0.186 0.814 30 H 0.265 0.735 31 H 0.225 0.775 32 H 0.222 0.778 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 12.532 -20.480 6.515 24.878 hybrid contribution 0.358 -0.161 -0.705 0.807 sum 12.890 -20.640 5.810 25.019 Atomic orbital electron populations 1.70053 1.08626 1.28853 1.50597 1.25943 0.95793 1.03599 0.93132 0.85594 0.79908 0.77067 0.79653 1.19021 1.15102 1.20293 1.21238 0.90528 0.93758 1.53205 0.95683 1.19949 0.94169 0.74130 0.99877 1.48578 1.34156 1.10033 1.19538 1.23271 0.94160 0.94427 0.96352 1.21765 1.11864 0.97470 1.01476 1.19457 0.98061 0.86975 0.94926 1.42283 1.47032 1.06040 1.30318 1.18215 0.79104 0.83170 0.83698 1.90748 1.40291 1.83520 1.25713 1.20676 1.01207 0.92722 0.97099 1.67598 1.14880 1.29881 1.04450 1.23729 0.97591 0.86677 0.99241 1.22941 0.91747 1.01790 0.94102 1.22194 1.00009 0.95891 0.95467 1.19002 0.92491 0.95570 0.85745 1.91589 1.72123 1.96534 1.49898 1.77341 1.25573 0.96681 1.17817 0.91840 0.89591 0.93583 0.76789 0.81421 0.73471 0.77516 0.77838 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.96 41.14 27.47 68.60 1.88 43.03 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -32.33 9.79 25.60 0.25 -32.08 16 8 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.24 11.25 5.33 85.63 0.46 11.70 16 10 N -0.34 -15.85 3.67 -351.85 -1.29 -17.14 16 11 C 0.07 2.54 11.43 83.52 0.95 3.49 16 12 C -0.29 -11.96 9.60 22.11 0.21 -11.75 16 13 C 0.26 11.31 8.11 133.36 1.08 12.39 16 14 N -0.61 -22.25 5.43 -310.03 -1.68 -23.93 16 15 C 0.57 19.56 7.77 86.82 0.67 20.24 16 16 O -0.53 -20.45 12.44 -3.88 -0.05 -20.50 16 17 C 0.02 0.51 6.75 41.90 0.28 0.79 16 18 N -0.46 -9.60 9.54 -184.80 -1.76 -11.36 16 19 C 0.09 0.93 11.18 84.86 0.95 1.87 16 20 C -0.09 -0.43 10.11 22.43 0.23 -0.21 16 21 C -0.11 -1.10 10.16 22.49 0.23 -0.87 16 22 C 0.10 2.03 7.32 22.76 0.17 2.20 16 23 F -0.12 -3.27 15.55 44.97 0.70 -2.57 16 24 N -0.34 -16.90 12.42 -54.49 -0.68 -17.58 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.09 3.50 7.12 -2.39 -0.02 3.48 16 27 H 0.05 2.09 7.57 -2.39 -0.02 2.08 16 28 H 0.22 5.97 8.06 -2.91 -0.02 5.95 16 29 H 0.17 6.58 5.91 -2.92 -0.02 6.56 16 30 H 0.43 14.18 8.15 -92.71 -0.76 13.43 16 31 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 32 H 0.20 -0.98 8.06 -2.91 -0.02 -1.01 16 33 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -84.29 301.60 3.73 -80.56 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.37 Total: 19.00 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.95 Total: 9.05 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.12 Total: -128.57 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.70 Total: -2.57 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.03 kcal Total: -84.29 3.73 -80.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532191357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.872 kcal (2) G-P(sol) polarization free energy of solvation -84.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds