Wall clock time and date at job start Tue Mar 31 2020 08:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48495 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47291 * 300.00364 * 3 2 1 6 6 H 1.48502 * 109.46698 * 60.00364 * 3 2 1 7 7 C 1.37875 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00453 * 184.42400 * 7 2 1 9 9 C 1.50703 * 119.99657 * 4.42393 * 7 2 1 10 10 C 1.52999 * 115.54985 * 84.82803 * 9 7 2 11 11 S 1.81399 * 109.47592 * 62.49646 * 10 9 7 12 12 C 1.81395 * 103.00032 * 185.17157 * 11 10 9 13 13 H 1.08993 * 109.44157 * 53.21990 * 12 11 10 14 14 C 1.53071 * 109.43731 * 293.30238 * 12 11 10 15 15 C 1.53411 * 108.29402 * 191.74876 * 14 12 11 16 16 O 1.42831 * 108.37196 * 64.74549 * 15 14 12 17 17 C 1.35847 * 117.86076 * 310.85416 * 16 15 14 18 18 C 1.39142 * 118.49844 * 197.01717 * 17 16 15 19 19 C 1.37969 * 120.21868 * 180.17804 * 18 17 16 20 20 C 1.38289 * 119.95504 * 0.02562 * 19 18 17 21 21 C 1.38104 * 119.98716 * 359.91571 * 20 19 18 22 22 C 1.38310 * 121.79089 * 17.11224 * 17 16 15 23 23 C 1.53002 * 117.49496 * 230.49244 * 9 7 2 24 24 C 1.52995 * 117.50075 * 299.15171 * 9 7 2 25 25 H 0.97002 * 120.00142 * 5.00177 * 1 2 3 26 26 H 1.09002 * 109.46914 * 302.49484 * 10 9 7 27 27 H 1.09000 * 109.47310 * 182.50207 * 10 9 7 28 28 H 1.09007 * 109.70344 * 311.44855 * 14 12 11 29 29 H 1.09001 * 109.70278 * 72.04532 * 14 12 11 30 30 H 1.08997 * 109.69020 * 184.47048 * 15 14 12 31 31 H 1.09004 * 109.67950 * 305.02722 * 15 14 12 32 32 H 1.08003 * 119.89559 * 0.16325 * 18 17 16 33 33 H 1.07994 * 120.02316 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00867 * 179.89651 * 20 19 18 35 35 H 1.08000 * 119.84726 * 180.02562 * 21 20 19 36 36 H 1.09009 * 117.49520 * 214.99875 * 23 9 7 37 37 H 1.08997 * 117.49939 * 0.02819 * 23 9 7 38 38 H 1.09003 * 117.49807 * 359.97438 * 24 9 7 39 39 H 1.08998 * 117.50298 * 144.97020 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1955 0.0716 9 6 1.2544 -2.4971 -0.1018 10 6 0.9101 -2.9518 -1.5215 11 16 2.4404 -3.2379 -2.4527 12 6 1.8383 -3.6071 -4.1235 13 1 1.1725 -2.8099 -4.4536 14 6 1.0756 -4.9342 -4.1085 15 6 0.8363 -5.3686 -5.5602 16 8 2.1027 -5.6329 -6.1656 17 6 3.0788 -4.6979 -6.0298 18 6 4.1737 -4.7520 -6.8866 19 6 5.1874 -3.8224 -6.7777 20 6 5.1165 -2.8333 -5.8138 21 6 4.0306 -2.7757 -4.9624 22 6 3.0092 -3.7063 -5.0682 23 6 1.5794 -3.5812 0.9279 24 6 0.2519 -2.8232 1.0070 25 1 -0.4850 0.8369 -0.0732 26 1 0.3219 -2.1798 -2.0176 27 1 0.3335 -3.8757 -1.4774 28 1 1.6651 -5.6911 -3.5910 29 1 0.1194 -4.8028 -3.6019 30 1 0.2255 -6.2711 -5.5776 31 1 0.3291 -4.5710 -6.1032 32 1 4.2306 -5.5244 -7.6394 33 1 6.0356 -3.8671 -7.4446 34 1 5.9102 -2.1061 -5.7266 35 1 3.9773 -2.0021 -4.2108 36 1 1.5479 -4.6183 0.5937 37 1 2.3355 -3.3516 1.6787 38 1 0.1352 -2.0954 1.8100 39 1 -0.6532 -3.3612 0.7251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559385880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:22 Heat of formation + Delta-G solvation = 2.971019 kcal Electronic energy + Delta-G solvation = -20543.633581 eV Core-core repulsion = 17542.952141 eV Total energy + Delta-G solvation = -3000.681440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56212 -37.42954 -36.58164 -34.26896 -31.94662 -30.62402 -30.14409 -27.71188 -25.79907 -25.21765 -23.64429 -22.41714 -21.10685 -20.02375 -19.25200 -17.76310 -16.70677 -16.18468 -16.12910 -15.34601 -14.96858 -14.64661 -14.26060 -13.96668 -13.85852 -13.64620 -13.29586 -13.22645 -12.82997 -12.59010 -12.10905 -11.82938 -11.46904 -11.35351 -11.22032 -10.97013 -10.90550 -10.84929 -10.49321 -10.45314 -10.16676 -9.58027 -9.31296 -8.97214 -8.66659 -8.42901 -8.10284 -8.00559 -6.85735 -6.05965 -4.11296 1.30313 1.50708 2.34284 3.27834 3.28649 3.36660 3.39636 3.42199 3.87620 4.40673 4.59714 4.67640 4.77152 5.04865 5.11264 5.15852 5.23089 5.34250 5.36069 5.40575 5.53001 5.59369 5.62735 5.87570 5.92507 6.05366 6.12301 6.17177 6.35434 6.36183 6.49840 6.57542 6.65545 6.70643 6.78063 6.84750 7.06925 7.35813 7.45842 7.52287 7.86930 8.37980 8.90684 9.54679 11.02791 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.004997 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.212815 B = 5602.250796 C = 6538.168386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.051 3.949 10 C -0.032 4.032 11 S -0.213 6.213 12 C -0.033 4.033 13 H 0.092 0.908 14 C -0.154 4.154 15 C 0.065 3.935 16 O -0.318 6.318 17 C 0.137 3.863 18 C -0.157 4.157 19 C -0.088 4.088 20 C -0.155 4.155 21 C -0.066 4.066 22 C -0.134 4.134 23 C -0.206 4.206 24 C -0.143 4.143 25 H 0.259 0.741 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 -8.680 -12.179 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.049 3.951 10 C -0.180 4.180 11 S 0.020 5.980 12 C -0.161 4.161 13 H 0.111 0.889 14 C -0.193 4.193 15 C -0.012 4.012 16 O -0.232 6.232 17 C 0.090 3.910 18 C -0.175 4.175 19 C -0.107 4.107 20 C -0.173 4.173 21 C -0.085 4.085 22 C -0.136 4.136 23 C -0.244 4.244 24 C -0.182 4.182 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.108 -8.660 -11.813 15.212 hybrid contribution -1.173 1.114 -0.253 1.638 sum 2.935 -7.545 -12.066 14.530 Atomic orbital electron populations 1.70017 1.05841 1.26629 1.49549 1.24941 0.94775 0.98868 0.94505 0.86609 0.80534 0.83889 0.77517 1.19508 1.20960 1.21156 1.20402 0.92685 0.88375 1.50413 0.91944 1.18469 0.98897 0.93549 0.84168 1.23127 0.94135 1.00843 0.99913 1.87032 1.17521 1.91099 1.02364 1.21956 0.97074 0.99766 0.97292 0.88948 1.22644 1.02099 0.97441 0.97125 1.22999 0.83065 1.02286 0.92871 1.85949 1.21216 1.42605 1.73442 1.18647 0.89563 0.88850 0.93912 1.20492 0.94367 1.02042 1.00644 1.20906 0.97619 0.94190 0.97978 1.21052 0.99039 1.00026 0.97184 1.21264 0.92031 0.97660 0.97589 1.19322 0.98137 0.98543 0.97603 1.23023 1.00237 0.95686 1.05443 1.22555 0.90754 1.01462 1.03473 0.93159 0.90348 0.93317 0.89276 0.89665 0.87428 0.91856 0.85513 0.85680 0.85833 0.84182 0.91558 0.90328 0.89474 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 12.66 55.43 0.70 -23.68 16 2 C 0.07 1.92 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.48 -12.82 8.40 -34.44 -0.29 -13.11 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.05 1.22 1.45 -155.66 -0.23 0.99 16 10 C -0.03 -0.68 5.61 37.16 0.21 -0.47 16 11 S -0.21 -4.17 19.25 -107.50 -2.07 -6.24 16 12 C -0.03 -0.52 2.81 -27.81 -0.08 -0.60 16 13 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 14 C -0.15 -2.06 5.32 -26.48 -0.14 -2.20 16 15 C 0.06 0.74 7.03 37.37 0.26 1.00 16 16 O -0.32 -4.38 10.27 -19.26 -0.20 -4.58 16 17 C 0.14 1.99 6.47 -39.22 -0.25 1.74 16 18 C -0.16 -1.99 9.94 -39.34 -0.39 -2.38 16 19 C -0.09 -1.03 10.04 -39.66 -0.40 -1.43 16 20 C -0.15 -2.00 10.04 -39.61 -0.40 -2.40 16 21 C -0.07 -1.01 9.02 -39.51 -0.36 -1.37 16 22 C -0.13 -2.09 5.44 -104.44 -0.57 -2.66 16 23 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 16 24 C -0.14 -3.28 9.17 -26.70 -0.24 -3.53 16 25 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 26 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 27 H 0.05 0.94 7.83 -51.92 -0.41 0.54 16 28 H 0.09 1.28 8.11 -51.93 -0.42 0.85 16 29 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 2.29 7.16 -52.49 -0.38 1.91 16 36 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -28.50 335.56 -10.57 -39.07 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.81 Total: 3.75 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -3.24 Total: -29.34 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.70 Total: -23.68 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.20 Total: -4.58 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.07 Total: -6.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.50 -10.57 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559385880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.039 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds