Wall clock time and date at job start Tue Mar 31 2020 07:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47378 * 2 1 4 4 S 1.81403 * 109.47018 * 240.00000 * 2 1 3 5 5 C 1.81399 * 102.99912 * 64.99991 * 4 2 1 6 6 C 1.50698 * 109.47232 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99977 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00430 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00440 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99639 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47343 * 89.99774 * 10 8 6 12 12 H 1.48504 * 109.46561 * 209.99822 * 10 8 6 13 13 H 1.48501 * 109.46988 * 329.99375 * 10 8 6 14 14 C 1.50702 * 109.47272 * 119.99936 * 2 1 3 15 15 C 1.38340 * 119.93800 * 60.27911 * 14 2 1 16 16 C 1.38294 * 120.23424 * 180.23769 * 15 14 2 17 17 C 1.38053 * 120.11863 * 359.47940 * 16 15 14 18 18 C 1.39287 * 119.87689 * 0.26032 * 17 16 15 19 19 C 1.48461 * 120.11667 * 179.97438 * 18 17 16 20 20 N 1.34047 * 126.67797 * 179.68395 * 19 18 17 21 21 N 1.28981 * 107.26768 * 179.83724 * 20 19 18 22 22 N 1.28730 * 108.94660 * 0.43994 * 21 20 19 23 23 H 0.97001 * 125.33968 * 179.69913 * 22 21 20 24 24 N 1.28872 * 109.31704 * 359.71964 * 22 21 20 25 25 C 1.38001 * 119.94359 * 239.99638 * 14 2 1 26 26 H 1.08998 * 109.46761 * 299.99972 * 1 2 3 27 27 H 1.08999 * 109.47175 * 60.00006 * 1 2 3 28 28 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46850 * 299.99854 * 5 4 2 30 30 H 1.08998 * 109.47400 * 59.99944 * 5 4 2 31 31 H 0.96993 * 120.00036 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.88292 * 359.97438 * 15 14 2 33 33 H 1.08002 * 119.94476 * 179.76592 * 16 15 14 34 34 H 1.07999 * 120.06154 * 180.23539 * 17 16 15 35 35 H 1.08003 * 120.05855 * 0.04726 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.5664 0.2153 -2.8309 6 6 1.9972 -0.3695 -4.1512 7 1 2.5573 -1.2926 -4.1759 8 6 1.6765 0.2738 -5.3278 9 7 2.0529 -0.2363 -6.4801 10 14 0.7083 1.8708 -5.2851 11 1 1.6484 3.0176 -5.2043 12 1 -0.1094 1.9870 -6.5192 13 1 -0.1836 1.8773 -4.0978 14 6 2.0324 -0.7104 1.2305 15 6 1.7022 -2.0365 1.4452 16 6 2.1558 -2.6930 2.5748 17 6 2.9500 -2.0304 3.4890 18 6 3.2899 -0.6967 3.2749 19 6 4.1433 0.0212 4.2549 20 7 4.5531 1.2952 4.1778 21 7 5.2696 1.5309 5.2241 22 7 5.3298 0.4620 5.9389 23 1 5.8115 0.3733 6.7762 24 7 4.6502 -0.4719 5.3673 25 6 2.8258 -0.0386 2.1380 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.4791 0.2881 -2.8037 30 1 2.0000 1.2085 -2.7142 31 1 1.8269 0.2161 -7.3077 32 1 1.0844 -2.5598 0.7304 33 1 1.8920 -3.7272 2.7396 34 1 3.3069 -2.5450 4.3689 35 1 3.0861 0.9956 1.9675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590033857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:02 Heat of formation + Delta-G solvation = 137.250480 kcal Electronic energy + Delta-G solvation = -19227.136753 eV Core-core repulsion = 16161.030515 eV Total energy + Delta-G solvation = -3066.106238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.65524 -39.47515 -34.88791 -34.35884 -33.23650 -33.01917 -30.80204 -29.73519 -28.95801 -25.10951 -24.63833 -23.65562 -22.62681 -22.09757 -20.55801 -19.36977 -17.34516 -17.11817 -16.75611 -15.90173 -15.67325 -14.89599 -14.55037 -14.13915 -13.87028 -13.69782 -13.49073 -13.27244 -12.81447 -12.57383 -12.43970 -12.42005 -11.89736 -11.62475 -11.57877 -11.41077 -11.28004 -11.08484 -10.91967 -10.78476 -10.33687 -10.07714 -9.62951 -9.01809 -8.79289 -8.70679 -8.57703 -6.81453 -6.17382 -4.19379 0.58119 1.01367 1.24594 2.00647 2.18946 2.58254 3.21968 3.29374 3.29863 3.49670 3.64516 3.81041 4.00287 4.31467 4.68780 4.84701 4.99537 5.08858 5.13887 5.20493 5.26514 5.38892 5.45189 5.51375 5.75778 5.89984 5.93983 6.04615 6.11182 6.27009 6.32601 6.40567 6.58436 6.60938 6.72113 6.83178 7.44014 7.93662 8.30961 8.85581 9.38445 10.94765 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.003281 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.745915 B = 8531.462248 C = 9009.648358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 H 0.089 0.911 4 S -0.253 6.253 5 C 0.045 3.955 6 C -0.513 4.513 7 H 0.083 0.917 8 C 0.080 3.920 9 N -0.892 5.892 10 Si 0.877 3.123 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.266 1.266 14 C -0.053 4.053 15 C -0.076 4.076 16 C -0.122 4.122 17 C -0.083 4.083 18 C -0.026 4.026 19 C 0.228 3.772 20 N -0.267 5.267 21 N -0.051 5.051 22 N -0.231 5.231 23 H 0.474 0.526 24 N -0.298 5.298 25 C -0.064 4.064 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.029 0.971 31 H 0.268 0.732 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -0.779 25.419 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 H 0.107 0.893 4 S -0.023 6.023 5 C -0.103 4.103 6 C -0.552 4.552 7 H 0.101 0.899 8 C -0.125 4.125 9 N -0.529 5.529 10 Si 0.704 3.296 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.054 4.054 15 C -0.096 4.096 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.030 4.030 19 C -0.052 4.052 20 N -0.140 5.140 21 N -0.046 5.046 22 N -0.076 5.076 23 H 0.328 0.672 24 N -0.150 5.150 25 C -0.086 4.086 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.998 -1.147 25.352 25.456 hybrid contribution -0.938 1.608 0.278 1.882 sum 1.060 0.461 25.629 25.655 Atomic orbital electron populations 1.22078 0.92846 1.03109 1.02008 1.22041 0.98619 1.01430 0.94339 0.89274 1.86884 1.76068 1.39941 0.99383 1.21457 0.98489 0.95592 0.94768 1.20479 1.36966 1.10854 0.86915 0.89867 1.24858 0.95260 0.97377 0.94982 1.69865 1.45860 1.39651 0.97572 0.86820 0.80671 0.84108 0.78020 1.19877 1.20842 1.19032 1.19286 0.97455 0.94279 0.94404 1.21320 0.97967 0.93711 0.96580 1.21053 0.98470 1.00214 0.94272 1.21099 0.97140 0.92630 0.99528 1.17116 0.99420 0.93307 0.93118 1.23742 0.99242 0.89368 0.92804 1.76127 1.10409 1.14209 1.13235 1.78920 1.14777 1.11391 0.99529 1.47719 1.33815 1.04895 1.21195 0.67174 1.74916 1.11944 1.17872 1.10224 1.21022 0.95239 1.00406 0.91911 0.92450 0.91759 0.91331 0.94563 0.95229 0.92240 0.84697 0.85145 0.85230 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.92 37.16 0.33 -1.64 16 2 C -0.04 -0.56 3.01 -27.88 -0.08 -0.65 16 3 H 0.09 1.37 7.87 -51.92 -0.41 0.96 16 4 S -0.25 -5.18 20.67 -107.50 -2.22 -7.40 16 5 C 0.04 1.06 4.46 36.00 0.16 1.22 16 6 C -0.51 -14.59 9.68 -34.44 -0.33 -14.92 16 7 H 0.08 2.60 7.96 -52.49 -0.42 2.19 16 8 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 9 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 10 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 14 C -0.05 -0.74 4.78 -104.67 -0.50 -1.24 16 15 C -0.08 -0.95 8.76 -39.52 -0.35 -1.30 16 16 C -0.12 -1.29 10.03 -39.63 -0.40 -1.69 16 17 C -0.08 -0.90 9.70 -39.26 -0.38 -1.28 16 18 C -0.03 -0.33 5.88 -104.89 -0.62 -0.94 16 19 C 0.23 2.82 7.94 -156.30 -1.24 1.57 16 20 N -0.27 -3.51 12.23 32.16 0.39 -3.11 16 21 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 22 N -0.23 -1.78 7.90 60.35 0.48 -1.30 16 23 H 0.47 1.21 8.96 -340.37 -3.05 -1.85 16 24 N -0.30 -3.05 12.08 32.17 0.39 -2.66 16 25 C -0.06 -0.85 9.32 -39.27 -0.37 -1.22 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.97 6.92 -51.93 -0.36 0.61 16 28 H 0.07 0.91 7.40 -51.93 -0.38 0.53 16 29 H 0.04 0.84 6.20 -51.92 -0.32 0.52 16 30 H 0.03 0.69 7.57 -51.92 -0.39 0.30 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.14 1.67 7.58 -52.49 -0.40 1.27 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.17 7.88 -52.49 -0.41 0.76 16 35 H 0.14 1.76 7.77 -52.48 -0.41 1.36 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -32.80 317.11 -9.71 -42.51 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.57 Total: -3.22 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.87 Total: -19.91 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 2.85 Total: -33.01 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -2.22 Total: -7.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.80 -9.71 -42.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590033857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.759 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds