Wall clock time and date at job start Tue Mar 31 2020 07:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47378 * 2 1 4 4 S 1.81403 * 109.47018 * 240.00000 * 2 1 3 5 5 C 1.81399 * 102.99912 * 64.99991 * 4 2 1 6 6 C 1.50698 * 109.47232 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99977 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00430 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00440 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99639 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47343 * 89.99774 * 10 8 6 12 12 H 1.48504 * 109.46561 * 209.99822 * 10 8 6 13 13 H 1.48501 * 109.46988 * 329.99375 * 10 8 6 14 14 C 1.50702 * 109.47272 * 119.99936 * 2 1 3 15 15 C 1.38340 * 119.93800 * 60.27911 * 14 2 1 16 16 C 1.38294 * 120.23424 * 180.23769 * 15 14 2 17 17 C 1.38053 * 120.11863 * 359.47940 * 16 15 14 18 18 C 1.39287 * 119.87689 * 0.26032 * 17 16 15 19 19 C 1.48461 * 120.11667 * 179.97438 * 18 17 16 20 20 N 1.34047 * 126.67797 * 179.68395 * 19 18 17 21 21 N 1.28981 * 107.26768 * 179.83724 * 20 19 18 22 22 N 1.28730 * 108.94660 * 0.43994 * 21 20 19 23 23 H 0.97001 * 125.33968 * 179.69913 * 22 21 20 24 24 N 1.28872 * 109.31704 * 359.71964 * 22 21 20 25 25 C 1.38001 * 119.94359 * 239.99638 * 14 2 1 26 26 H 1.08998 * 109.46761 * 299.99972 * 1 2 3 27 27 H 1.08999 * 109.47175 * 60.00006 * 1 2 3 28 28 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46850 * 299.99854 * 5 4 2 30 30 H 1.08998 * 109.47400 * 59.99944 * 5 4 2 31 31 H 0.96993 * 120.00036 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.88292 * 359.97438 * 15 14 2 33 33 H 1.08002 * 119.94476 * 179.76592 * 16 15 14 34 34 H 1.07999 * 120.06154 * 180.23539 * 17 16 15 35 35 H 1.08003 * 120.05855 * 0.04726 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.5664 0.2153 -2.8309 6 6 1.9972 -0.3695 -4.1512 7 1 2.5573 -1.2926 -4.1759 8 6 1.6765 0.2738 -5.3278 9 7 2.0529 -0.2363 -6.4801 10 14 0.7083 1.8708 -5.2851 11 1 1.6484 3.0176 -5.2043 12 1 -0.1094 1.9870 -6.5192 13 1 -0.1836 1.8773 -4.0978 14 6 2.0324 -0.7104 1.2305 15 6 1.7022 -2.0365 1.4452 16 6 2.1558 -2.6930 2.5748 17 6 2.9500 -2.0304 3.4890 18 6 3.2899 -0.6967 3.2749 19 6 4.1433 0.0212 4.2549 20 7 4.5531 1.2952 4.1778 21 7 5.2696 1.5309 5.2241 22 7 5.3298 0.4620 5.9389 23 1 5.8115 0.3733 6.7762 24 7 4.6502 -0.4719 5.3673 25 6 2.8258 -0.0386 2.1380 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.4791 0.2881 -2.8037 30 1 2.0000 1.2085 -2.7142 31 1 1.8269 0.2161 -7.3077 32 1 1.0844 -2.5598 0.7304 33 1 1.8920 -3.7272 2.7396 34 1 3.3069 -2.5450 4.3689 35 1 3.0861 0.9956 1.9675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590033857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:01 Heat of formation + Delta-G solvation = 116.612932 kcal Electronic energy + Delta-G solvation = -19228.031664 eV Core-core repulsion = 16161.030515 eV Total energy + Delta-G solvation = -3067.001149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.46999 -40.42367 -35.84227 -35.26006 -35.18372 -34.12741 -31.71247 -31.51088 -30.25495 -25.97601 -25.52413 -24.74773 -24.61397 -23.03188 -21.58823 -20.15983 -19.09659 -18.15012 -17.91940 -17.21292 -16.64511 -16.39405 -15.81860 -15.46373 -15.22895 -14.84224 -14.77892 -14.48325 -14.38455 -14.03541 -13.62413 -13.39894 -13.19827 -12.80540 -12.60168 -12.53969 -12.39812 -12.21438 -12.14540 -12.03620 -11.85932 -11.78210 -11.58097 -10.87858 -10.58982 -9.78067 -9.57421 -8.46852 -8.36226 -6.45375 -0.29132 0.15556 0.24168 1.08380 1.33825 1.35465 1.37607 1.42791 1.46960 1.99441 2.30108 2.64760 2.86031 2.96937 3.14189 3.62308 3.87272 4.07619 4.14817 4.24138 4.29055 4.40092 4.47670 4.60302 4.63736 4.75096 4.78741 4.91223 4.93705 5.04071 5.21252 5.36927 5.41200 5.47215 5.60347 5.62133 5.91735 6.08657 6.58741 7.10731 7.16959 8.79761 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.003281 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.745915 B = 8531.462248 C = 9009.648358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.018 4.018 3 H 0.090 0.910 4 S -0.287 6.287 5 C 0.048 3.952 6 C -0.528 4.528 7 H 0.035 0.965 8 C 0.019 3.981 9 N -0.941 5.941 10 Si 0.951 3.049 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.243 1.243 14 C -0.069 4.069 15 C -0.085 4.085 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.033 4.033 19 C 0.213 3.787 20 N -0.299 5.299 21 N -0.058 5.058 22 N -0.199 5.199 23 H 0.495 0.505 24 N -0.291 5.291 25 C -0.072 4.072 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.272 0.728 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -0.236 28.383 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 H 0.109 0.891 4 S -0.057 6.057 5 C -0.100 4.100 6 C -0.566 4.566 7 H 0.054 0.946 8 C -0.181 4.181 9 N -0.580 5.580 10 Si 0.773 3.227 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.166 1.166 14 C -0.070 4.070 15 C -0.105 4.105 16 C -0.131 4.131 17 C -0.095 4.095 18 C -0.036 4.036 19 C -0.066 4.066 20 N -0.171 5.171 21 N -0.053 5.053 22 N -0.050 5.050 23 H 0.354 0.646 24 N -0.144 5.144 25 C -0.093 4.093 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.199 -0.604 28.339 28.371 hybrid contribution -0.556 1.314 -0.438 1.492 sum 0.643 0.710 27.901 27.918 Atomic orbital electron populations 1.22055 0.91354 1.03689 1.02608 1.22065 0.99740 1.00839 0.91959 0.89126 1.86880 1.76882 1.40622 1.01353 1.21216 0.98860 0.95977 0.93917 1.20692 1.36608 1.09551 0.89753 0.94641 1.25890 0.96320 1.01603 0.94248 1.70021 1.47593 1.41842 0.98578 0.85653 0.79381 0.78655 0.79013 1.18892 1.20214 1.16613 1.19157 0.98885 0.95028 0.93942 1.21431 0.98291 0.93303 0.97448 1.21365 0.97273 1.01427 0.93013 1.21380 0.96194 0.91924 1.00021 1.17248 0.99455 0.94020 0.92908 1.23773 0.99961 0.89382 0.93505 1.76110 1.11566 1.15002 1.14416 1.78862 1.14841 1.12067 0.99530 1.47790 1.32278 1.03710 1.21245 0.64594 1.74870 1.11798 1.18083 1.09613 1.20988 0.95446 1.00408 0.92508 0.89822 0.92951 0.90850 0.93635 0.94713 0.91889 0.84833 0.82091 0.83048 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.92 71.98 0.64 -2.98 16 2 C -0.02 -0.54 3.01 29.85 0.09 -0.45 16 3 H 0.09 2.71 7.87 -2.39 -0.02 2.70 16 4 S -0.29 -11.93 20.67 -56.49 -1.17 -13.10 16 5 C 0.05 2.31 4.46 71.24 0.32 2.62 16 6 C -0.53 -31.03 9.68 25.60 0.25 -30.78 16 7 H 0.04 2.36 7.96 -2.91 -0.02 2.33 16 8 C 0.02 1.11 5.47 84.65 0.46 1.58 16 9 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 10 Si 0.95 43.05 27.47 68.60 1.88 44.93 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 14 C -0.07 -1.83 4.78 -19.90 -0.10 -1.93 16 15 C -0.08 -1.98 8.76 22.31 0.20 -1.79 16 16 C -0.11 -2.07 10.03 22.24 0.22 -1.84 16 17 C -0.07 -1.40 9.70 22.48 0.22 -1.18 16 18 C -0.03 -0.76 5.88 -20.04 -0.12 -0.88 16 19 C 0.21 4.92 7.94 137.38 1.09 6.01 16 20 N -0.30 -7.54 12.23 -52.18 -0.64 -8.18 16 21 N -0.06 -1.16 13.47 37.02 0.50 -0.66 16 22 N -0.20 -2.59 7.90 37.02 0.29 -2.29 16 23 H 0.49 1.11 8.96 -347.54 -3.12 -2.00 16 24 N -0.29 -5.23 12.08 -52.13 -0.63 -5.86 16 25 C -0.07 -1.84 9.32 22.47 0.21 -1.63 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.49 6.92 -2.39 -0.02 1.48 16 28 H 0.07 1.84 7.40 -2.39 -0.02 1.82 16 29 H 0.05 2.07 6.20 -2.39 -0.01 2.06 16 30 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 31 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 32 H 0.13 3.14 7.58 -2.91 -0.02 3.12 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.15 2.17 7.88 -2.91 -0.02 2.15 16 35 H 0.13 3.38 7.77 -2.91 -0.02 3.36 16 Total: -1.00 -73.36 317.11 1.98 -71.38 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -2.04 Total: 5.50 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.48 Total: -33.27 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -0.18 Total: -75.44 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.93 kcal Atomic # 16 Polarization: -11.93 SS G_CDS: -1.17 Total: -13.10 kcal Total: -73.36 1.98 -71.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590033857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.991 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds