Wall clock time and date at job start Tue Mar 31 2020 07:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 S 1.81396 * 109.47254 * 240.00507 * 2 1 3 5 5 C 1.81404 * 103.00169 * 64.99674 * 4 2 1 6 6 C 1.50700 * 109.47085 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00017 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46997 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47311 * 119.99871 * 10 8 6 13 13 H 1.48508 * 109.46540 * 240.00068 * 10 8 6 14 14 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 15 15 C 1.38317 * 119.87605 * 59.73016 * 14 2 1 16 16 C 1.38037 * 120.11511 * 179.76775 * 15 14 2 17 17 C 1.39298 * 119.87776 * 0.47778 * 16 15 14 18 18 C 1.48466 * 120.11822 * 179.79114 * 17 16 15 19 19 N 1.34042 * 126.67726 * 180.02562 * 18 17 16 20 20 N 1.28986 * 107.26957 * 179.97438 * 19 18 17 21 21 N 1.28733 * 108.94179 * 0.02562 * 20 19 18 22 22 H 0.96999 * 125.33908 * 179.97438 * 21 20 19 23 23 N 1.28874 * 109.31872 * 359.74556 * 21 20 19 24 24 C 1.39306 * 119.76935 * 359.77826 * 17 16 15 25 25 C 1.38034 * 119.87618 * 359.97438 * 24 17 16 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47152 * 300.00012 * 5 4 2 30 30 H 1.08997 * 109.46834 * 60.00397 * 5 4 2 31 31 H 0.96991 * 119.99964 * 179.97438 * 9 8 6 32 32 H 1.08000 * 119.94845 * 0.02562 * 15 14 2 33 33 H 1.07992 * 120.06111 * 180.25039 * 16 15 14 34 34 H 1.07992 * 120.06013 * 180.02562 * 24 17 16 35 35 H 1.07998 * 119.93236 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1348 -0.8550 -1.4812 5 6 1.5665 0.2155 -2.8309 6 6 1.9985 -0.3686 -4.1512 7 1 2.5586 -1.2918 -4.1759 8 6 1.6788 0.2754 -5.3277 9 7 0.9972 1.3998 -5.2976 10 14 2.2137 -0.4490 -6.9643 11 1 2.9624 -1.7093 -6.7267 12 1 1.0161 -0.7331 -7.7949 13 1 3.0886 0.5201 -7.6721 14 6 2.0324 -0.7104 1.2304 15 6 1.6921 -2.0330 1.4496 16 6 2.1534 -2.6899 2.5726 17 6 2.9548 -2.0154 3.4909 18 6 3.4501 -2.7154 4.7029 19 7 4.2238 -2.1970 5.6669 20 7 4.4273 -3.1276 6.5365 21 7 3.8173 -4.1956 6.1561 22 1 3.8124 -5.0394 6.6344 23 7 3.2104 -3.9663 5.0426 24 6 3.2902 -0.6819 3.2679 25 6 2.8277 -0.0360 2.1391 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.4793 0.2883 -2.8038 30 1 2.0002 1.2086 -2.7141 31 1 0.7727 1.8531 -6.1251 32 1 1.0678 -2.5540 0.7389 33 1 1.8905 -3.7237 2.7408 34 1 3.9115 -0.1546 3.9765 35 1 3.0874 0.9977 1.9651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590034095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:16 Heat of formation + Delta-G solvation = 131.720524 kcal Electronic energy + Delta-G solvation = -19022.723497 eV Core-core repulsion = 15956.377463 eV Total energy + Delta-G solvation = -3066.346035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.64695 -39.41388 -35.02318 -34.27687 -33.17263 -32.83024 -31.00914 -29.47914 -28.38629 -25.02977 -24.87330 -23.20705 -22.77581 -22.27265 -20.76659 -19.39911 -17.33775 -17.05262 -16.53547 -15.69141 -15.58921 -14.83154 -14.50419 -14.13424 -13.86031 -13.45288 -13.42277 -13.08353 -12.77199 -12.52560 -12.36282 -12.25886 -11.87955 -11.59319 -11.56739 -11.34861 -11.15671 -10.95681 -10.90271 -10.81581 -10.62152 -9.87589 -9.57545 -8.97101 -8.81593 -8.62473 -8.43034 -6.70894 -6.20217 -4.24085 0.57837 1.00088 1.41916 2.02001 2.14642 2.71631 3.24586 3.32005 3.38229 3.52312 3.81668 3.87796 4.02314 4.35213 4.75807 4.89788 4.98094 5.12878 5.17130 5.25285 5.34428 5.43805 5.55333 5.60628 5.82153 5.94389 6.06554 6.11427 6.14799 6.34685 6.38575 6.45047 6.67709 6.88827 7.09997 7.11880 7.74722 7.93976 8.01049 8.78101 9.39068 10.91049 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038190 B = 0.002760 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.002836 B =10143.453226 C =10425.214893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 H 0.088 0.912 4 S -0.290 6.290 5 C 0.089 3.911 6 C -0.511 4.511 7 H 0.067 0.933 8 C 0.065 3.935 9 N -0.893 5.893 10 Si 0.905 3.095 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.281 1.281 14 C -0.024 4.024 15 C -0.104 4.104 16 C -0.077 4.077 17 C -0.034 4.034 18 C 0.229 3.771 19 N -0.271 5.271 20 N -0.053 5.053 21 N -0.230 5.230 22 H 0.474 0.526 23 N -0.297 5.297 24 C -0.074 4.074 25 C -0.114 4.114 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -7.667 20.992 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 H 0.107 0.893 4 S -0.060 6.060 5 C -0.058 4.058 6 C -0.550 4.550 7 H 0.085 0.915 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.732 3.268 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.026 4.026 15 C -0.123 4.123 16 C -0.097 4.097 17 C -0.038 4.038 18 C -0.050 4.050 19 N -0.144 5.144 20 N -0.048 5.048 21 N -0.076 5.076 22 H 0.328 0.672 23 N -0.148 5.148 24 C -0.094 4.094 25 C -0.133 4.133 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.420 -8.512 21.369 23.129 hybrid contribution -0.629 0.341 -0.957 1.195 sum 1.790 -8.171 20.412 22.060 Atomic orbital electron populations 1.22064 0.92755 1.02987 1.02153 1.22019 0.98663 1.01228 0.94101 0.89335 1.86800 1.76586 1.41627 1.01027 1.21093 0.98726 0.94694 0.91285 1.20720 1.36202 1.09224 0.88874 0.91468 1.24960 0.94809 0.94812 0.99296 1.69958 1.38604 1.16556 1.27995 0.86315 0.78460 0.79287 0.82721 1.19419 1.20745 1.20743 1.19662 0.95119 0.94067 0.93794 1.21029 1.00276 0.94054 0.96920 1.21097 0.95690 0.99882 0.93016 1.17197 1.02220 0.93600 0.90792 1.23782 0.96773 0.87425 0.97042 1.76081 1.15710 1.21688 1.00897 1.78892 1.14599 0.90660 1.20663 1.47719 1.31041 1.14282 1.14562 0.67167 1.74956 1.19710 1.18606 1.01573 1.21070 0.98313 0.92698 0.97313 1.20989 0.98036 1.00491 0.93798 0.91531 0.92596 0.91386 0.94404 0.94711 0.92570 0.84554 0.85092 0.84794 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.91 37.16 0.33 -1.75 16 2 C -0.03 -0.52 3.01 -27.88 -0.08 -0.60 16 3 H 0.09 1.41 7.87 -51.92 -0.41 1.00 16 4 S -0.29 -6.08 20.69 -107.50 -2.22 -8.30 16 5 C 0.09 2.24 5.39 36.01 0.19 2.44 16 6 C -0.51 -14.22 9.13 -34.44 -0.31 -14.53 16 7 H 0.07 1.89 7.71 -52.48 -0.40 1.48 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 10 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C -0.02 -0.34 4.79 -104.57 -0.50 -0.85 16 15 C -0.10 -1.39 8.76 -39.63 -0.35 -1.74 16 16 C -0.08 -0.94 9.70 -39.26 -0.38 -1.32 16 17 C -0.03 -0.43 5.88 -104.89 -0.62 -1.04 16 18 C 0.23 2.80 7.94 -156.31 -1.24 1.56 16 19 N -0.27 -3.37 12.23 32.16 0.39 -2.98 16 20 N -0.05 -0.55 13.47 60.35 0.81 0.27 16 21 N -0.23 -1.77 7.90 60.35 0.48 -1.29 16 22 H 0.47 1.23 8.96 -340.37 -3.05 -1.82 16 23 N -0.30 -3.11 12.08 32.17 0.39 -2.72 16 24 C -0.07 -0.88 9.70 -39.26 -0.38 -1.27 16 25 C -0.11 -1.43 9.66 -39.63 -0.38 -1.81 16 26 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.12 6.92 -51.93 -0.36 0.76 16 29 H 0.04 0.98 7.14 -51.93 -0.37 0.61 16 30 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.14 1.81 7.55 -52.49 -0.40 1.41 16 33 H 0.13 1.40 7.88 -52.49 -0.41 0.99 16 34 H 0.13 1.43 7.89 -52.49 -0.41 1.02 16 35 H 0.13 1.43 7.94 -52.49 -0.42 1.02 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -31.55 320.65 -10.02 -41.57 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.60 Total: -3.45 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -3.82 Total: -19.20 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 2.81 Total: -31.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -2.22 Total: -8.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.55 -10.02 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590034095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.287 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds