Wall clock time and date at job start Tue Mar 31 2020 07:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 S 1.81396 * 109.47254 * 240.00507 * 2 1 3 5 5 C 1.81404 * 103.00169 * 64.99674 * 4 2 1 6 6 C 1.50700 * 109.47085 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00017 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46997 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47311 * 119.99871 * 10 8 6 13 13 H 1.48508 * 109.46540 * 240.00068 * 10 8 6 14 14 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 15 15 C 1.38317 * 119.87605 * 59.73016 * 14 2 1 16 16 C 1.38037 * 120.11511 * 179.76775 * 15 14 2 17 17 C 1.39298 * 119.87776 * 0.47778 * 16 15 14 18 18 C 1.48466 * 120.11822 * 179.79114 * 17 16 15 19 19 N 1.34042 * 126.67726 * 180.02562 * 18 17 16 20 20 N 1.28986 * 107.26957 * 179.97438 * 19 18 17 21 21 N 1.28733 * 108.94179 * 0.02562 * 20 19 18 22 22 H 0.96999 * 125.33908 * 179.97438 * 21 20 19 23 23 N 1.28874 * 109.31872 * 359.74556 * 21 20 19 24 24 C 1.39306 * 119.76935 * 359.77826 * 17 16 15 25 25 C 1.38034 * 119.87618 * 359.97438 * 24 17 16 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47152 * 300.00012 * 5 4 2 30 30 H 1.08997 * 109.46834 * 60.00397 * 5 4 2 31 31 H 0.96991 * 119.99964 * 179.97438 * 9 8 6 32 32 H 1.08000 * 119.94845 * 0.02562 * 15 14 2 33 33 H 1.07992 * 120.06111 * 180.25039 * 16 15 14 34 34 H 1.07992 * 120.06013 * 180.02562 * 24 17 16 35 35 H 1.07998 * 119.93236 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1348 -0.8550 -1.4812 5 6 1.5665 0.2155 -2.8309 6 6 1.9985 -0.3686 -4.1512 7 1 2.5586 -1.2918 -4.1759 8 6 1.6788 0.2754 -5.3277 9 7 0.9972 1.3998 -5.2976 10 14 2.2137 -0.4490 -6.9643 11 1 2.9624 -1.7093 -6.7267 12 1 1.0161 -0.7331 -7.7949 13 1 3.0886 0.5201 -7.6721 14 6 2.0324 -0.7104 1.2304 15 6 1.6921 -2.0330 1.4496 16 6 2.1534 -2.6899 2.5726 17 6 2.9548 -2.0154 3.4909 18 6 3.4501 -2.7154 4.7029 19 7 4.2238 -2.1970 5.6669 20 7 4.4273 -3.1276 6.5365 21 7 3.8173 -4.1956 6.1561 22 1 3.8124 -5.0394 6.6344 23 7 3.2104 -3.9663 5.0426 24 6 3.2902 -0.6819 3.2679 25 6 2.8277 -0.0360 2.1391 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.4793 0.2883 -2.8038 30 1 2.0002 1.2086 -2.7141 31 1 0.7727 1.8531 -6.1251 32 1 1.0678 -2.5540 0.7389 33 1 1.8905 -3.7237 2.7408 34 1 3.9115 -0.1546 3.9765 35 1 3.0874 0.9977 1.9651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590034095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:16 Heat of formation + Delta-G solvation = 113.335888 kcal Electronic energy + Delta-G solvation = -19023.520715 eV Core-core repulsion = 15956.377463 eV Total energy + Delta-G solvation = -3067.143253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.45814 -40.42462 -36.02019 -35.28038 -35.15166 -33.80902 -31.98647 -30.86721 -30.13634 -26.03020 -25.73937 -25.19737 -23.88316 -23.25507 -21.83319 -20.18572 -18.72435 -18.13745 -17.88457 -17.22695 -16.75045 -16.44117 -15.75761 -15.12555 -14.98604 -14.88514 -14.60462 -14.39068 -14.33498 -14.02374 -13.69044 -13.47265 -13.19030 -12.90906 -12.75030 -12.57459 -12.39785 -12.30368 -12.24536 -11.92410 -11.84861 -11.68010 -11.41647 -10.73266 -10.56905 -9.91171 -9.49430 -8.42862 -8.31552 -6.44039 -0.37259 0.15738 0.44388 0.97134 1.40037 1.40359 1.42964 1.45006 1.56037 2.05251 2.37932 2.66335 2.85620 3.03010 3.16396 3.58710 3.84527 4.04369 4.18470 4.20354 4.29110 4.43017 4.49041 4.60920 4.73756 4.85834 4.90254 4.99318 5.01642 5.11576 5.22484 5.37039 5.42829 5.59255 5.61038 5.63930 5.89219 5.92698 6.63647 7.11605 7.23742 8.80341 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038190 B = 0.002760 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.002836 B =10143.453226 C =10425.214893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.017 4.017 3 H 0.090 0.910 4 S -0.301 6.301 5 C 0.093 3.907 6 C -0.534 4.534 7 H 0.060 0.940 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.974 3.026 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.274 1.274 14 C -0.043 4.043 15 C -0.108 4.108 16 C -0.074 4.074 17 C -0.033 4.033 18 C 0.214 3.786 19 N -0.293 5.293 20 N -0.056 5.056 21 N -0.200 5.200 22 H 0.494 0.506 23 N -0.296 5.296 24 C -0.073 4.073 25 C -0.110 4.110 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.011 0.989 31 H 0.270 0.730 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -8.844 22.336 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 H 0.109 0.891 4 S -0.071 6.071 5 C -0.054 4.054 6 C -0.573 4.573 7 H 0.078 0.922 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.797 3.203 11 H -0.190 1.190 12 H -0.198 1.198 13 H -0.199 1.199 14 C -0.045 4.045 15 C -0.127 4.127 16 C -0.095 4.095 17 C -0.037 4.037 18 C -0.065 4.065 19 N -0.165 5.165 20 N -0.051 5.051 21 N -0.051 5.051 22 H 0.354 0.646 23 N -0.149 5.149 24 C -0.093 4.093 25 C -0.129 4.129 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.908 -9.704 22.732 24.888 hybrid contribution -0.764 0.625 -1.139 1.507 sum 2.144 -9.079 21.593 23.522 Atomic orbital electron populations 1.22014 0.91771 1.03399 1.02323 1.22055 0.99463 1.00848 0.92162 0.89146 1.86595 1.76942 1.41454 1.02134 1.20743 0.97375 0.94407 0.92924 1.21034 1.36524 1.09236 0.90505 0.92192 1.25877 0.94574 0.95082 1.03054 1.70057 1.39368 1.17690 1.29231 0.85268 0.78351 0.78612 0.78058 1.19020 1.19768 1.19890 1.19531 0.96907 0.94603 0.93447 1.21054 1.00434 0.93866 0.97369 1.21190 0.95353 1.00490 0.92421 1.17356 1.01645 0.93834 0.90866 1.23750 0.97541 0.87995 0.97258 1.76064 1.16425 1.22666 1.01377 1.78842 1.14882 0.91017 1.20376 1.47783 1.29101 1.14656 1.13576 0.64644 1.74916 1.19735 1.17974 1.02248 1.21218 0.98153 0.92687 0.97229 1.21142 0.97102 1.01213 0.93488 0.91065 0.89735 0.93681 0.96195 0.97077 0.92137 0.84828 0.83647 0.83461 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.91 71.98 0.64 -3.35 16 2 C -0.02 -0.55 3.01 29.85 0.09 -0.46 16 3 H 0.09 2.86 7.87 -2.39 -0.02 2.84 16 4 S -0.30 -12.84 20.69 -56.49 -1.17 -14.00 16 5 C 0.09 4.88 5.39 71.24 0.38 5.27 16 6 C -0.53 -30.50 9.13 25.60 0.23 -30.27 16 7 H 0.06 3.43 7.71 -2.91 -0.02 3.41 16 8 C 0.01 0.83 5.46 84.65 0.46 1.29 16 9 N -0.92 -54.15 13.29 21.45 0.28 -53.86 16 10 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C -0.04 -1.16 4.79 -19.83 -0.09 -1.26 16 15 C -0.11 -2.76 8.76 22.24 0.19 -2.57 16 16 C -0.07 -1.69 9.70 22.48 0.22 -1.47 16 17 C -0.03 -0.76 5.88 -20.04 -0.12 -0.88 16 18 C 0.21 4.80 7.94 137.38 1.09 5.89 16 19 N -0.29 -6.76 12.23 -52.18 -0.64 -7.40 16 20 N -0.06 -1.04 13.47 37.02 0.50 -0.54 16 21 N -0.20 -2.56 7.90 37.02 0.29 -2.26 16 22 H 0.49 1.15 8.96 -347.54 -3.12 -1.97 16 23 N -0.30 -5.50 12.08 -52.13 -0.63 -6.13 16 24 C -0.07 -1.61 9.70 22.48 0.22 -1.39 16 25 C -0.11 -2.58 9.66 22.24 0.21 -2.37 16 26 H 0.07 2.00 7.36 -2.39 -0.02 1.98 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 1.52 6.92 -2.39 -0.02 1.50 16 29 H 0.02 1.09 7.14 -2.39 -0.02 1.07 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.27 14.69 8.31 -92.72 -0.77 13.92 16 32 H 0.13 3.45 7.55 -2.91 -0.02 3.43 16 33 H 0.15 2.81 7.88 -2.91 -0.02 2.79 16 34 H 0.15 2.85 7.89 -2.91 -0.02 2.83 16 35 H 0.15 2.92 7.94 -2.91 -0.02 2.90 16 Total: -1.00 -68.14 320.65 2.21 -65.93 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -1.99 Total: 4.08 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.53 Total: -31.56 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -0.19 Total: -70.20 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -12.84 SS G_CDS: -1.17 Total: -14.00 kcal Total: -68.14 2.21 -65.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590034095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.267 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds