Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48503 * 109.46874 * 269.99849 * 3 2 1 5 5 H 1.48498 * 109.46956 * 29.99501 * 3 2 1 6 6 H 1.48500 * 109.47318 * 149.99785 * 3 2 1 7 7 C 1.37879 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99888 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99864 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46799 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 C 1.38317 * 119.87870 * 269.72818 * 13 12 11 15 15 C 1.38033 * 120.11565 * 179.76788 * 14 13 12 16 16 C 1.39300 * 119.87908 * 0.52591 * 15 14 13 17 17 C 1.48466 * 120.11938 * 179.74621 * 16 15 14 18 18 N 1.34042 * 126.67628 * 180.02562 * 17 16 15 19 19 N 1.28986 * 107.26762 * 179.97438 * 18 17 16 20 20 N 1.28724 * 108.94628 * 0.02562 * 19 18 17 21 21 H 0.97003 * 125.34518 * 179.97438 * 20 19 18 22 22 N 1.28883 * 109.31605 * 359.74417 * 20 19 18 23 23 C 1.39298 * 119.76782 * 359.72787 * 16 15 14 24 24 C 1.38038 * 119.88102 * 359.97438 * 23 16 15 25 25 H 0.97001 * 120.00368 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46974 * 59.99695 * 9 7 2 27 27 H 1.08997 * 109.47444 * 300.00006 * 9 7 2 28 28 H 1.09001 * 109.46823 * 60.00210 * 11 10 9 29 29 H 1.08992 * 109.47429 * 300.00246 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00340 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00520 * 12 11 10 32 32 H 1.07994 * 119.94268 * 0.02562 * 14 13 12 33 33 H 1.07996 * 120.05933 * 180.24825 * 15 14 13 34 34 H 1.07998 * 120.06255 * 180.02562 * 23 16 15 35 35 H 1.07992 * 119.93998 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3516 -5.3367 -0.0003 12 6 2.2086 -6.6042 -0.0010 13 6 1.3128 -7.8161 -0.0023 14 6 0.9074 -8.3746 1.1964 15 6 0.0831 -9.4817 1.2010 16 6 -0.3316 -10.0431 -0.0045 17 6 -1.2136 -11.2374 -0.0059 18 7 -1.6883 -11.8809 -1.0816 19 7 -2.4111 -12.8600 -0.6541 20 7 -2.4062 -12.8521 0.6331 21 1 -2.8741 -13.4851 1.1999 22 7 -1.6781 -11.8740 1.0507 23 6 0.0839 -9.4799 -1.2089 24 6 0.9033 -8.3690 -1.2021 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 0.7228 -5.3232 -0.8905 29 1 0.7222 -5.3237 0.8894 30 1 2.8378 -6.6169 -0.8909 31 1 2.8377 -6.6180 0.8890 32 1 1.2330 -7.9411 2.1305 33 1 -0.2362 -9.9146 2.1375 34 1 -0.2350 -9.9110 -2.1463 35 1 1.2257 -7.9313 -2.1352 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = 127.720191 kcal Electronic energy + Delta-G solvation = -18532.008634 eV Core-core repulsion = 15465.489131 eV Total energy + Delta-G solvation = -3066.519502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.73786 -39.55449 -35.11990 -34.37047 -33.13831 -32.91069 -31.15911 -29.44881 -28.51606 -25.21904 -24.91992 -23.32314 -22.62449 -22.46363 -20.85301 -19.50488 -17.42715 -17.04045 -16.49220 -15.74027 -15.56383 -15.17488 -14.54360 -14.36689 -13.96564 -13.75272 -13.50241 -13.39782 -12.77794 -12.54058 -12.38096 -12.20180 -12.19924 -11.64874 -11.59362 -11.37552 -11.26152 -11.04928 -10.92321 -10.78539 -10.63147 -9.90167 -9.55095 -9.11681 -8.86043 -8.65736 -8.60749 -6.69028 -6.18516 -4.22679 0.47449 0.91395 1.24739 1.93452 2.10443 2.66546 3.26933 3.32548 3.37926 3.41850 3.64133 3.88371 3.92176 4.36254 4.73630 4.78124 4.84309 5.02737 5.14085 5.18574 5.22416 5.27060 5.37203 5.44828 5.64941 5.84810 5.88142 6.00353 6.03368 6.22284 6.24667 6.26348 6.53332 6.74611 7.10878 7.12746 7.76058 7.84981 8.02367 8.79288 9.40329 10.92802 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.039737 B = 0.002275 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.470250 B =12303.282728 C =12541.399332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.093 3.907 10 S -0.312 6.312 11 C -0.083 4.083 12 C -0.066 4.066 13 C -0.047 4.047 14 C -0.118 4.118 15 C -0.076 4.076 16 C -0.034 4.034 17 C 0.226 3.774 18 N -0.270 5.270 19 N -0.051 5.051 20 N -0.229 5.229 21 H 0.475 0.525 22 N -0.297 5.297 23 C -0.072 4.072 24 C -0.117 4.117 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -24.953 2.015 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.086 0.914 9 C -0.054 4.054 10 S -0.085 6.085 11 C -0.231 4.231 12 C -0.105 4.105 13 C -0.050 4.050 14 C -0.137 4.137 15 C -0.096 4.096 16 C -0.037 4.037 17 C -0.053 4.053 18 N -0.143 5.143 19 N -0.046 5.046 20 N -0.075 5.075 21 H 0.329 0.671 22 N -0.148 5.148 23 C -0.092 4.092 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.473 -25.289 1.732 25.468 hybrid contribution -1.216 0.749 0.602 1.550 sum -3.689 -24.540 2.334 24.925 Atomic orbital electron populations 1.69954 1.06148 1.27321 1.49736 1.24975 0.94975 0.99303 0.94699 0.86350 0.79740 0.82217 0.78347 1.20344 1.21002 1.19539 1.20695 0.93480 0.88773 1.52170 0.91449 1.21026 0.93542 0.90763 1.00032 1.86581 1.21467 1.02398 1.98082 1.23174 1.00340 0.95186 1.04391 1.20426 0.96222 0.89432 1.04381 1.20187 0.96203 0.95492 0.93091 1.21050 0.98335 0.95984 0.98291 1.21120 0.96213 0.95411 0.96903 1.17205 0.99203 0.92360 0.94941 1.23772 0.99372 0.98029 0.84143 1.76091 1.09750 1.02789 1.25638 1.78905 1.15526 1.16200 0.94001 1.47727 1.32493 1.21448 1.05854 0.67098 1.74944 1.11099 1.01929 1.26858 1.21151 0.95848 0.95117 0.97125 1.21071 0.98280 0.95904 0.98302 0.92514 0.94659 0.94663 0.90780 0.90821 0.89861 0.89901 0.84987 0.85086 0.84727 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -14.46 9.13 -34.44 -0.31 -14.78 16 8 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 9 C 0.09 2.42 5.70 36.00 0.21 2.63 16 10 S -0.31 -6.65 21.66 -107.50 -2.33 -8.98 16 11 C -0.08 -1.33 5.92 37.16 0.22 -1.11 16 12 C -0.07 -0.84 5.35 -27.88 -0.15 -0.99 16 13 C -0.05 -0.54 5.14 -104.57 -0.54 -1.07 16 14 C -0.12 -1.25 9.68 -39.63 -0.38 -1.63 16 15 C -0.08 -0.78 9.70 -39.26 -0.38 -1.16 16 16 C -0.03 -0.37 5.88 -104.89 -0.62 -0.99 16 17 C 0.23 2.53 7.94 -156.31 -1.24 1.29 16 18 N -0.27 -3.15 12.23 32.15 0.39 -2.75 16 19 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 20 N -0.23 -1.58 7.90 60.35 0.48 -1.11 16 21 H 0.47 0.90 8.96 -340.36 -3.05 -2.16 16 22 N -0.30 -2.82 12.08 32.17 0.39 -2.44 16 23 C -0.07 -0.77 9.70 -39.26 -0.38 -1.15 16 24 C -0.12 -1.26 9.68 -39.63 -0.38 -1.64 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.04 0.96 8.14 -51.92 -0.42 0.53 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.17 7.88 -52.49 -0.41 0.75 16 34 H 0.13 1.30 7.89 -52.49 -0.41 0.89 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -32.24 326.36 -10.48 -42.72 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -6.79 Total: -4.80 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -4.06 Total: -18.90 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 2.81 Total: -31.32 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.33 Total: -8.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.24 -10.48 -42.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.439 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds