Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48503 * 109.46874 * 269.99849 * 3 2 1 5 5 H 1.48498 * 109.46956 * 29.99501 * 3 2 1 6 6 H 1.48500 * 109.47318 * 149.99785 * 3 2 1 7 7 C 1.37879 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99888 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99864 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46799 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 C 1.38317 * 119.87870 * 269.72818 * 13 12 11 15 15 C 1.38033 * 120.11565 * 179.76788 * 14 13 12 16 16 C 1.39300 * 119.87908 * 0.52591 * 15 14 13 17 17 C 1.48466 * 120.11938 * 179.74621 * 16 15 14 18 18 N 1.34042 * 126.67628 * 180.02562 * 17 16 15 19 19 N 1.28986 * 107.26762 * 179.97438 * 18 17 16 20 20 N 1.28724 * 108.94628 * 0.02562 * 19 18 17 21 21 H 0.97003 * 125.34518 * 179.97438 * 20 19 18 22 22 N 1.28883 * 109.31605 * 359.74417 * 20 19 18 23 23 C 1.39298 * 119.76782 * 359.72787 * 16 15 14 24 24 C 1.38038 * 119.88102 * 359.97438 * 23 16 15 25 25 H 0.97001 * 120.00368 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46974 * 59.99695 * 9 7 2 27 27 H 1.08997 * 109.47444 * 300.00006 * 9 7 2 28 28 H 1.09001 * 109.46823 * 60.00210 * 11 10 9 29 29 H 1.08992 * 109.47429 * 300.00246 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00340 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00520 * 12 11 10 32 32 H 1.07994 * 119.94268 * 0.02562 * 14 13 12 33 33 H 1.07996 * 120.05933 * 180.24825 * 15 14 13 34 34 H 1.07998 * 120.06255 * 180.02562 * 23 16 15 35 35 H 1.07992 * 119.93998 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3516 -5.3367 -0.0003 12 6 2.2086 -6.6042 -0.0010 13 6 1.3128 -7.8161 -0.0023 14 6 0.9074 -8.3746 1.1964 15 6 0.0831 -9.4817 1.2010 16 6 -0.3316 -10.0431 -0.0045 17 6 -1.2136 -11.2374 -0.0059 18 7 -1.6883 -11.8809 -1.0816 19 7 -2.4111 -12.8600 -0.6541 20 7 -2.4062 -12.8521 0.6331 21 1 -2.8741 -13.4851 1.1999 22 7 -1.6781 -11.8740 1.0507 23 6 0.0839 -9.4799 -1.2089 24 6 0.9033 -8.3690 -1.2021 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 0.7228 -5.3232 -0.8905 29 1 0.7222 -5.3237 0.8894 30 1 2.8378 -6.6169 -0.8909 31 1 2.8377 -6.6180 0.8890 32 1 1.2330 -7.9411 2.1305 33 1 -0.2362 -9.9146 2.1375 34 1 -0.2350 -9.9110 -2.1463 35 1 1.2257 -7.9313 -2.1352 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = 109.000125 kcal Electronic energy + Delta-G solvation = -18532.820397 eV Core-core repulsion = 15465.489131 eV Total energy + Delta-G solvation = -3067.331265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 6.66 seconds Orbital eigenvalues (eV) -45.47554 -40.38495 -35.99057 -35.28105 -35.16628 -33.79159 -31.95984 -30.68644 -30.37993 -26.21736 -25.73332 -25.12742 -23.64416 -23.38847 -21.75642 -20.20397 -18.62535 -18.15697 -17.83319 -17.17114 -16.66274 -16.49316 -16.03296 -15.38418 -15.05571 -14.77733 -14.58698 -14.37597 -14.27845 -14.10830 -14.05289 -13.41019 -13.32089 -12.76250 -12.71235 -12.44294 -12.40913 -12.35779 -12.17683 -11.85496 -11.79085 -11.77735 -11.40498 -10.73840 -10.67398 -9.91668 -9.51943 -8.44413 -8.32334 -6.45603 -0.32652 0.15567 0.44642 1.02696 1.31989 1.41451 1.41666 1.42620 1.55275 2.06083 2.37905 2.66115 2.80505 3.02231 3.15457 3.87035 3.87990 4.05592 4.14101 4.17131 4.22071 4.40603 4.47167 4.55759 4.61309 4.88146 4.89198 4.95951 4.96340 5.13857 5.14412 5.38104 5.44127 5.58213 5.60178 5.66713 5.90011 5.93120 6.62264 7.09814 7.22551 8.79698 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.039737 B = 0.002275 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.470250 B =12303.282728 C =12541.399332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.092 3.908 10 S -0.315 6.315 11 C -0.069 4.069 12 C -0.055 4.055 13 C -0.058 4.058 14 C -0.119 4.119 15 C -0.077 4.077 16 C -0.040 4.040 17 C 0.212 3.788 18 N -0.295 5.295 19 N -0.057 5.057 20 N -0.201 5.201 21 H 0.494 0.506 22 N -0.296 5.296 23 C -0.078 4.078 24 C -0.119 4.119 25 H 0.270 0.730 26 H 0.012 0.988 27 H 0.013 0.987 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 -25.835 2.511 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.082 0.918 9 C -0.055 4.055 10 S -0.088 6.088 11 C -0.217 4.217 12 C -0.093 4.093 13 C -0.060 4.060 14 C -0.137 4.137 15 C -0.097 4.097 16 C -0.043 4.043 17 C -0.068 4.068 18 N -0.167 5.167 19 N -0.052 5.052 20 N -0.051 5.051 21 H 0.354 0.646 22 N -0.149 5.149 23 C -0.098 4.098 24 C -0.137 4.137 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.034 -26.196 2.230 26.369 hybrid contribution -1.445 0.820 0.489 1.732 sum -3.480 -25.376 2.719 25.757 Atomic orbital electron populations 1.70061 1.07735 1.28552 1.50201 1.25945 0.95891 1.03162 0.93841 0.85261 0.78490 0.77428 0.78782 1.19403 1.20119 1.18840 1.21026 0.93494 0.90241 1.52697 0.91843 1.20716 0.94078 0.92934 0.97780 1.86352 1.21419 1.02943 1.98049 1.23288 0.99965 0.93910 1.04567 1.20307 0.95948 0.87981 1.05074 1.20063 0.96855 0.95357 0.93763 1.21232 0.97946 0.95895 0.98586 1.21259 0.95975 0.95259 0.97239 1.17391 0.99111 0.92439 0.95373 1.23850 0.99997 0.98485 0.84424 1.76071 1.10685 1.03573 1.26414 1.78846 1.15544 1.15940 0.94886 1.47791 1.31091 1.20770 1.05491 0.64645 1.74904 1.11201 1.02252 1.26520 1.21251 0.95923 0.95173 0.97446 1.21221 0.97967 0.95820 0.98647 0.92110 0.96930 0.96876 0.90699 0.90608 0.89296 0.89191 0.83647 0.83780 0.84167 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 2 C 0.01 0.69 5.46 84.66 0.46 1.15 16 3 Si 0.98 43.74 29.54 68.60 2.03 45.77 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.80 9.13 25.60 0.23 -30.56 16 8 H 0.06 3.61 7.71 -2.91 -0.02 3.59 16 9 C 0.09 4.95 5.70 71.24 0.41 5.36 16 10 S -0.31 -13.41 21.66 -56.49 -1.22 -14.63 16 11 C -0.07 -2.17 5.92 71.98 0.43 -1.75 16 12 C -0.05 -1.30 5.35 29.85 0.16 -1.14 16 13 C -0.06 -1.22 5.14 -19.83 -0.10 -1.32 16 14 C -0.12 -2.28 9.68 22.24 0.22 -2.07 16 15 C -0.08 -1.46 9.70 22.48 0.22 -1.24 16 16 C -0.04 -0.83 5.88 -20.04 -0.12 -0.95 16 17 C 0.21 4.50 7.94 137.38 1.09 5.59 16 18 N -0.30 -6.63 12.23 -52.18 -0.64 -7.27 16 19 N -0.06 -1.03 13.47 37.02 0.50 -0.53 16 20 N -0.20 -2.40 7.90 37.02 0.29 -2.11 16 21 H 0.49 0.77 8.96 -347.53 -3.12 -2.34 16 22 N -0.30 -5.13 12.08 -52.13 -0.63 -5.76 16 23 C -0.08 -1.58 9.70 22.48 0.22 -1.36 16 24 C -0.12 -2.38 9.68 22.24 0.22 -2.16 16 25 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.14 2.28 7.88 -2.91 -0.02 2.26 16 34 H 0.14 2.62 7.89 -2.91 -0.02 2.59 16 35 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -69.32 326.36 2.04 -67.28 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.00 Total: 2.29 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.43 Total: -30.45 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -0.19 Total: -70.26 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -13.41 SS G_CDS: -1.22 Total: -14.63 kcal Total: -69.32 2.04 -67.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.280 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.66 seconds