Wall clock time and date at job start Tue Mar 31 2020 08:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48490 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46943 * 299.99512 * 3 2 1 6 6 H 1.48501 * 109.47247 * 59.99366 * 3 2 1 7 7 C 1.38952 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99748 * 194.80119 * 7 2 1 9 9 N 1.37092 * 120.00392 * 14.80372 * 7 2 1 10 10 C 1.46507 * 119.99668 * 13.66436 * 9 7 2 11 11 C 1.50707 * 109.46993 * 263.60354 * 10 9 7 12 12 O 1.20820 * 119.99501 * 3.52064 * 11 10 9 13 13 O 1.34226 * 119.99783 * 183.51551 * 11 10 9 14 14 C 1.34778 * 120.00377 * 193.66348 * 9 7 2 15 15 O 1.21286 * 120.00110 * 185.29232 * 14 9 7 16 16 C 1.50697 * 119.99716 * 5.28701 * 14 9 7 17 17 H 1.09004 * 110.25919 * 33.10135 * 16 14 9 18 18 C 1.54331 * 110.29509 * 155.14891 * 16 14 9 19 19 C 1.54367 * 102.57093 * 145.18017 * 18 16 14 20 20 C 1.51534 * 104.96528 * 333.95256 * 19 18 16 21 21 C 1.38741 * 130.60800 * 197.04633 * 20 19 18 22 22 C 1.38587 * 118.55420 * 179.79326 * 21 20 19 23 23 C 1.38221 * 118.98856 * 359.97438 * 22 21 20 24 24 N 1.31690 * 120.80294 * 0.02562 * 23 22 21 25 25 C 1.32296 * 122.03380 * 0.02562 * 24 23 22 26 26 H 0.96997 * 119.99871 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47345 * 23.60723 * 10 9 7 28 28 H 1.09004 * 109.46663 * 143.61118 * 10 9 7 29 29 H 0.96702 * 116.99910 * 180.02562 * 13 11 10 30 30 H 1.09000 * 110.82739 * 263.50406 * 18 16 14 31 31 H 1.08999 * 110.82302 * 26.85862 * 18 16 14 32 32 H 1.09004 * 110.31588 * 92.71535 * 19 18 16 33 33 H 1.09001 * 110.31868 * 214.90169 * 19 18 16 34 34 H 1.08002 * 120.72595 * 359.76966 * 21 20 19 35 35 H 1.08002 * 120.50236 * 180.02562 * 22 21 20 36 36 H 1.08005 * 119.59818 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0620 -1.2189 0.2395 9 7 1.3575 -2.3711 -0.3023 10 6 0.0258 -2.3302 -0.9117 11 6 -1.0223 -2.4795 0.1609 12 8 -0.6937 -2.5431 1.3218 13 8 -2.3207 -2.5418 -0.1736 14 6 1.9421 -3.5567 -0.0394 15 8 1.4097 -4.5872 -0.3938 16 6 3.2574 -3.6018 0.6947 17 1 3.3168 -2.7843 1.4133 18 6 3.4238 -4.9581 1.4121 19 6 4.9417 -5.2147 1.2975 20 6 5.3757 -4.4506 0.0630 21 6 6.5269 -4.5535 -0.7045 22 6 6.6678 -3.7197 -1.8025 23 6 5.6605 -2.8191 -2.0933 24 7 4.5810 -2.7490 -1.3423 25 6 4.4095 -3.5265 -0.2858 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1107 -1.3773 -1.4230 28 1 -0.0704 -3.1448 -1.6295 29 1 -2.9561 -2.6373 0.5491 30 1 3.1213 -4.8837 2.4566 31 1 2.8594 -5.7383 0.9015 32 1 5.4577 -4.8330 2.1785 33 1 5.1373 -6.2801 1.1754 34 1 7.2967 -5.2676 -0.4516 35 1 7.5509 -3.7734 -2.4219 36 1 5.7599 -2.1648 -2.9469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:37 Heat of formation + Delta-G solvation = -96.160494 kcal Electronic energy + Delta-G solvation = -23721.612071 eV Core-core repulsion = 20170.338751 eV Total energy + Delta-G solvation = -3551.273320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.92380 -41.03093 -39.83659 -37.32306 -36.65851 -36.42641 -33.62918 -33.35991 -30.59592 -30.06116 -28.55133 -26.60510 -24.35647 -23.59309 -22.58630 -21.83690 -20.91847 -19.00322 -18.81739 -18.21765 -17.49350 -17.25933 -17.16344 -16.40969 -16.24992 -16.17130 -15.91068 -15.36881 -14.90928 -14.48518 -14.35258 -14.07156 -13.81461 -13.49352 -13.41487 -13.27133 -12.80324 -12.72444 -12.62132 -12.42513 -12.31921 -12.20113 -12.08350 -11.80798 -11.59628 -10.97791 -10.72162 -10.49634 -10.03334 -9.89753 -9.56187 -8.34995 -5.89075 0.21790 0.48308 1.36016 1.44442 1.58249 1.68776 1.80558 2.24893 2.48789 2.82686 3.02391 3.09027 3.24001 3.59078 3.87155 4.07595 4.12912 4.17165 4.33115 4.37887 4.51308 4.59372 4.69801 4.75834 4.81920 4.90441 4.93947 5.02597 5.11087 5.26765 5.31330 5.39331 5.46973 5.68642 5.85950 5.89739 6.38246 7.07862 7.23015 7.32599 7.47732 7.86347 8.70211 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.007076 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.186535 B = 3956.138536 C = 5092.591460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.313 4.313 8 H 0.105 0.895 9 N -0.431 5.431 10 C 0.145 3.855 11 C 0.504 3.496 12 O -0.551 6.551 13 O -0.520 6.520 14 C 0.471 3.529 15 O -0.634 6.634 16 C -0.049 4.049 17 H 0.098 0.902 18 C -0.106 4.106 19 C -0.062 4.062 20 C -0.154 4.154 21 C -0.066 4.066 22 C -0.164 4.164 23 C 0.078 3.922 24 N -0.503 5.503 25 C 0.107 3.893 26 H 0.272 0.728 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.413 0.587 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.176 0.824 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -5.113 -1.045 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.440 4.440 8 H 0.123 0.877 9 N -0.147 5.147 10 C 0.019 3.981 11 C 0.347 3.653 12 O -0.440 6.440 13 O -0.332 6.332 14 C 0.261 3.739 15 O -0.522 6.522 16 C -0.071 4.071 17 H 0.116 0.884 18 C -0.144 4.144 19 C -0.099 4.099 20 C -0.156 4.156 21 C -0.092 4.092 22 C -0.183 4.183 23 C -0.079 4.079 24 N -0.212 5.212 25 C -0.031 4.031 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.095 0.905 29 H 0.273 0.727 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.188 0.812 35 H 0.193 0.807 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.609 -4.800 -1.451 11.735 hybrid contribution -0.239 0.649 0.675 0.966 sum 10.370 -4.151 -0.776 11.197 Atomic orbital electron populations 1.69911 1.07060 1.28327 1.49386 1.26017 0.96245 1.02615 0.96256 0.84838 0.78494 0.77144 0.77655 1.18952 1.19787 1.21035 1.19926 0.94646 0.83301 1.46149 0.87715 1.43527 1.13253 1.05895 1.52020 1.20695 0.80804 1.04570 0.91992 1.23775 0.82481 0.68876 0.90204 1.90521 1.82534 1.48100 1.22867 1.84463 1.17855 1.85673 1.45207 1.20405 0.88328 0.82543 0.82609 1.90453 1.68443 1.34329 1.59009 1.20674 0.89567 1.01402 0.95467 0.88421 1.22306 0.97582 0.93777 1.00719 1.21028 0.93366 1.00954 0.94537 1.21844 0.95790 0.98485 0.99468 1.21469 0.96040 0.98563 0.93109 1.22470 1.01104 0.96199 0.98544 1.23163 0.88688 0.97927 0.98149 1.66849 1.24747 1.24414 1.05141 1.21406 0.95289 0.93334 0.93026 0.91821 0.84548 0.90498 0.72743 0.88955 0.91193 0.87547 0.87774 0.81157 0.80711 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.00 9.01 21.66 0.20 -47.81 16 2 C -0.01 -0.62 5.09 84.93 0.43 -0.18 16 3 Si 0.99 41.70 29.58 68.60 2.03 43.73 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.31 -16.62 8.99 84.04 0.76 -15.86 16 8 H 0.11 5.49 5.85 -2.91 -0.02 5.48 16 9 N -0.43 -23.17 2.17 -639.57 -1.39 -24.56 16 10 C 0.15 7.50 5.18 85.63 0.44 7.95 16 11 C 0.50 25.60 6.72 71.24 0.48 26.08 16 12 O -0.55 -31.36 17.02 21.98 0.37 -30.98 16 13 O -0.52 -21.21 13.42 -51.38 -0.69 -21.90 16 14 C 0.47 24.61 6.61 87.66 0.58 25.19 16 15 O -0.63 -35.59 15.31 -3.05 -0.05 -35.63 16 16 C -0.05 -2.12 2.32 -11.59 -0.03 -2.15 16 17 H 0.10 4.36 6.88 -2.39 -0.02 4.34 16 18 C -0.11 -3.62 6.50 31.51 0.20 -3.42 16 19 C -0.06 -1.54 6.80 30.58 0.21 -1.33 16 20 C -0.15 -4.59 6.16 -19.49 -0.12 -4.71 16 21 C -0.07 -1.49 10.17 22.47 0.23 -1.26 16 22 C -0.16 -3.61 10.12 22.35 0.23 -3.39 16 23 C 0.08 2.34 11.18 84.71 0.95 3.29 16 24 N -0.50 -20.29 10.08 -182.99 -1.84 -22.13 16 25 C 0.11 4.21 6.28 42.72 0.27 4.47 16 26 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 27 H 0.14 7.14 5.87 -2.39 -0.01 7.13 16 28 H 0.08 3.86 7.55 -2.39 -0.02 3.85 16 29 H 0.41 12.66 9.10 -74.06 -0.67 11.98 16 30 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.07 2.70 6.92 -2.39 -0.02 2.68 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -76.06 309.11 3.72 -72.34 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.47 Total: 32.28 kcal Atomic # 6 Polarization: 30.05 SS G_CDS: 4.63 Total: 34.67 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.04 Total: -94.50 kcal Atomic # 8 Polarization: -88.15 SS G_CDS: -0.36 Total: -88.51 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -76.06 3.72 -72.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.824 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds