Wall clock time and date at job start Tue Mar 31 2020 08:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00055 * 2 1 4 4 H 1.48507 * 109.47301 * 240.00304 * 3 2 1 5 5 H 1.48500 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47169 * 120.00144 * 3 2 1 7 7 C 1.38952 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00014 * 177.69033 * 7 2 1 9 9 N 1.37096 * 119.99957 * 357.68938 * 7 2 1 10 10 C 1.46502 * 119.99891 * 319.06444 * 9 7 2 11 11 C 1.50701 * 109.47067 * 261.84428 * 10 9 7 12 12 O 1.20828 * 119.99990 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00248 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00418 * 139.06596 * 9 7 2 15 15 O 1.21295 * 119.99641 * 3.66017 * 14 9 7 16 16 C 1.50699 * 120.00466 * 183.66147 * 14 9 7 17 17 H 1.08997 * 110.25713 * 315.43585 * 16 14 9 18 18 C 1.54332 * 110.37774 * 193.32452 * 16 14 9 19 19 C 1.54366 * 102.38815 * 214.67974 * 18 16 14 20 20 C 1.51218 * 105.12058 * 26.29371 * 19 18 16 21 21 C 1.38752 * 130.69196 * 162.83057 * 20 19 18 22 22 C 1.38571 * 118.55235 * 180.02562 * 21 20 19 23 23 C 1.38228 * 118.99772 * 359.97438 * 22 21 20 24 24 N 1.31691 * 120.79748 * 0.25175 * 23 22 21 25 25 C 1.32299 * 122.03068 * 359.47122 * 24 23 22 26 26 H 0.96997 * 119.99842 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47372 * 21.84922 * 10 9 7 28 28 H 1.09004 * 109.46927 * 141.85059 * 10 9 7 29 29 H 0.96700 * 117.00312 * 180.02562 * 13 11 10 30 30 H 1.09008 * 110.82555 * 332.89990 * 18 16 14 31 31 H 1.09002 * 110.82427 * 96.25628 * 18 16 14 32 32 H 1.09007 * 110.31136 * 267.37906 * 19 18 16 33 33 H 1.09003 * 110.31327 * 145.20482 * 19 18 16 34 34 H 1.07994 * 120.71921 * 0.03001 * 21 20 19 35 35 H 1.08001 * 120.50294 * 179.97438 * 22 21 20 36 36 H 1.07993 * 119.60550 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0881 -1.2038 -0.0382 9 7 1.3242 -2.3902 0.0468 10 6 0.1577 -2.5284 0.9223 11 6 0.5690 -3.2064 2.2038 12 8 1.7186 -3.5394 2.3691 13 8 -0.3416 -3.4393 3.1621 14 6 1.7242 -3.4298 -0.7120 15 8 2.7282 -3.3375 -1.3863 16 6 0.9241 -4.7068 -0.7227 17 1 0.6415 -4.9836 0.2929 18 6 1.7344 -5.8431 -1.3815 19 6 0.6381 -6.6578 -2.1006 20 6 -0.4719 -5.6685 -2.3760 21 6 -1.5471 -5.7354 -3.2505 22 6 -2.4273 -4.6663 -3.3010 23 6 -2.2045 -3.5756 -2.4816 24 7 -1.1705 -3.5446 -1.6666 25 6 -0.3109 -4.5469 -1.5853 26 1 -0.4850 0.8400 0.0004 27 1 -0.2471 -1.5416 1.1469 28 1 -0.6030 -3.1279 0.4220 29 1 -0.0304 -3.8764 3.9666 30 1 2.4520 -5.4425 -2.0977 31 1 2.2385 -6.4473 -0.6272 32 1 0.2787 -7.4601 -1.4560 33 1 1.0218 -7.0659 -3.0357 34 1 -1.6947 -6.6019 -3.8779 35 1 -3.2746 -4.6850 -3.9705 36 1 -2.8840 -2.7369 -2.5133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:44 Heat of formation + Delta-G solvation = -73.686177 kcal Electronic energy + Delta-G solvation = -23895.418675 eV Core-core repulsion = 20345.119915 eV Total energy + Delta-G solvation = -3550.298760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -40.69546 -39.50836 -38.15070 -35.83868 -35.35346 -34.45974 -32.50681 -31.55544 -29.05242 -28.13984 -27.52110 -24.68669 -23.22205 -21.95170 -21.26086 -20.96027 -18.66266 -17.43048 -16.98102 -16.61254 -16.29871 -16.09302 -15.42501 -15.05085 -14.91006 -14.68974 -14.11514 -13.82295 -13.33885 -13.21983 -13.08915 -12.52785 -12.48142 -12.10403 -11.62308 -11.53193 -11.46695 -11.28735 -11.09851 -10.94454 -10.75128 -10.67129 -10.49280 -10.34453 -9.79147 -9.50622 -8.97480 -8.87370 -8.69595 -8.26512 -7.49960 -6.25378 -4.04243 1.33833 1.54880 3.00317 3.24373 3.27810 3.32075 3.50246 3.89390 4.13023 4.21950 4.34612 4.68655 4.78646 5.01651 5.10484 5.12872 5.22049 5.38369 5.42778 5.57331 5.76097 5.81609 5.87434 5.99951 6.04276 6.14304 6.26251 6.33918 6.45833 6.46118 6.58855 6.95303 7.02389 7.18014 7.62611 8.26692 8.37887 8.45920 8.65498 9.15856 9.34754 9.93973 10.75569 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.006835 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.009796 B = 4095.310304 C = 4523.822700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.035 3.965 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.090 0.910 9 N -0.416 5.416 10 C 0.102 3.898 11 C 0.445 3.555 12 O -0.519 6.519 13 O -0.526 6.526 14 C 0.493 3.507 15 O -0.566 6.566 16 C -0.063 4.063 17 H 0.096 0.904 18 C -0.105 4.105 19 C -0.076 4.076 20 C -0.150 4.150 21 C -0.070 4.070 22 C -0.180 4.180 23 C 0.107 3.893 24 N -0.449 5.449 25 C 0.138 3.862 26 H 0.271 0.729 27 H 0.167 0.833 28 H 0.108 0.892 29 H 0.392 0.608 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 -10.431 -1.537 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.168 4.168 3 Si 0.754 3.246 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.108 0.892 9 N -0.134 5.134 10 C -0.024 4.024 11 C 0.287 3.713 12 O -0.406 6.406 13 O -0.337 6.337 14 C 0.281 3.719 15 O -0.448 6.448 16 C -0.085 4.085 17 H 0.113 0.887 18 C -0.143 4.143 19 C -0.113 4.113 20 C -0.152 4.152 21 C -0.096 4.096 22 C -0.200 4.200 23 C -0.051 4.051 24 N -0.156 5.156 25 C 0.000 4.000 26 H 0.081 0.919 27 H 0.183 0.817 28 H 0.126 0.874 29 H 0.249 0.751 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.862 -9.348 -1.670 11.716 hybrid contribution 0.194 -0.169 0.181 0.314 sum -6.669 -9.517 -1.489 11.716 Atomic orbital electron populations 1.69481 1.05695 1.27508 1.48802 1.25500 0.95638 0.99776 0.95860 0.85980 0.78999 0.80478 0.79116 1.19725 1.20830 1.19941 1.19445 0.91996 0.81577 1.49759 0.89197 1.42801 1.26486 1.10848 1.33275 1.21718 0.90962 1.05835 0.83925 1.25734 0.83653 0.75481 0.86393 1.90652 1.20830 1.49077 1.80080 1.84651 1.45069 1.74602 1.29352 1.19785 0.86330 0.84766 0.81065 1.90503 1.26969 1.82522 1.44820 1.20850 0.91995 0.96916 0.98783 0.88660 1.22277 0.97169 0.94460 1.00384 1.20975 0.92947 0.96395 1.01001 1.21448 0.97477 0.98267 0.98020 1.20953 0.93106 0.98555 0.96958 1.22042 1.00879 0.95423 1.01677 1.22716 0.93873 0.97144 0.91352 1.66993 1.02089 1.26672 1.19884 1.21489 0.94189 0.89376 0.94906 0.91871 0.81677 0.87449 0.75085 0.88513 0.90109 0.90154 0.90380 0.85402 0.84948 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.15 10.75 55.50 0.60 -22.56 16 2 C 0.03 0.94 5.29 -17.47 -0.09 0.84 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.60 8.94 -14.93 -0.13 -8.73 16 8 H 0.09 2.70 7.72 -52.49 -0.41 2.30 16 9 N -0.42 -11.06 2.13 -116.09 -0.25 -11.31 16 10 C 0.10 2.39 5.12 -5.19 -0.03 2.36 16 11 C 0.45 9.56 7.39 36.01 0.27 9.83 16 12 O -0.52 -12.49 16.97 -18.75 -0.32 -12.81 16 13 O -0.53 -8.87 13.42 -39.26 -0.53 -9.40 16 14 C 0.49 12.71 6.56 -10.99 -0.07 12.64 16 15 O -0.57 -16.22 15.40 5.54 0.09 -16.14 16 16 C -0.06 -1.28 2.34 -91.84 -0.21 -1.49 16 17 H 0.10 1.86 6.69 -51.93 -0.35 1.51 16 18 C -0.10 -1.75 6.45 -25.32 -0.16 -1.91 16 19 C -0.08 -1.00 6.77 -26.91 -0.18 -1.18 16 20 C -0.15 -2.34 6.16 -104.20 -0.64 -2.98 16 21 C -0.07 -0.91 10.17 -39.27 -0.40 -1.31 16 22 C -0.18 -2.32 10.12 -39.46 -0.40 -2.72 16 23 C 0.11 1.69 11.18 -17.62 -0.20 1.50 16 24 N -0.45 -8.92 8.60 -9.19 -0.08 -9.00 16 25 C 0.14 2.66 6.06 -82.03 -0.50 2.16 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.17 4.17 5.18 -51.93 -0.27 3.91 16 28 H 0.11 2.39 4.77 -51.93 -0.25 2.14 16 29 H 0.39 4.63 9.10 45.56 0.41 5.04 16 30 H 0.10 1.81 6.90 -51.92 -0.36 1.45 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -34.66 307.96 -6.51 -41.17 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.88 Total: 10.19 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -2.75 Total: 9.00 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.27 Total: -42.86 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.76 Total: -38.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.66 -6.51 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.516 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds