Wall clock time and date at job start Tue Mar 31 2020 08:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00055 * 2 1 4 4 H 1.48507 * 109.47301 * 240.00304 * 3 2 1 5 5 H 1.48500 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47169 * 120.00144 * 3 2 1 7 7 C 1.38952 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00014 * 177.69033 * 7 2 1 9 9 N 1.37096 * 119.99957 * 357.68938 * 7 2 1 10 10 C 1.46502 * 119.99891 * 319.06444 * 9 7 2 11 11 C 1.50701 * 109.47067 * 261.84428 * 10 9 7 12 12 O 1.20828 * 119.99990 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00248 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00418 * 139.06596 * 9 7 2 15 15 O 1.21295 * 119.99641 * 3.66017 * 14 9 7 16 16 C 1.50699 * 120.00466 * 183.66147 * 14 9 7 17 17 H 1.08997 * 110.25713 * 315.43585 * 16 14 9 18 18 C 1.54332 * 110.37774 * 193.32452 * 16 14 9 19 19 C 1.54366 * 102.38815 * 214.67974 * 18 16 14 20 20 C 1.51218 * 105.12058 * 26.29371 * 19 18 16 21 21 C 1.38752 * 130.69196 * 162.83057 * 20 19 18 22 22 C 1.38571 * 118.55235 * 180.02562 * 21 20 19 23 23 C 1.38228 * 118.99772 * 359.97438 * 22 21 20 24 24 N 1.31691 * 120.79748 * 0.25175 * 23 22 21 25 25 C 1.32299 * 122.03068 * 359.47122 * 24 23 22 26 26 H 0.96997 * 119.99842 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47372 * 21.84922 * 10 9 7 28 28 H 1.09004 * 109.46927 * 141.85059 * 10 9 7 29 29 H 0.96700 * 117.00312 * 180.02562 * 13 11 10 30 30 H 1.09008 * 110.82555 * 332.89990 * 18 16 14 31 31 H 1.09002 * 110.82427 * 96.25628 * 18 16 14 32 32 H 1.09007 * 110.31136 * 267.37906 * 19 18 16 33 33 H 1.09003 * 110.31327 * 145.20482 * 19 18 16 34 34 H 1.07994 * 120.71921 * 0.03001 * 21 20 19 35 35 H 1.08001 * 120.50294 * 179.97438 * 22 21 20 36 36 H 1.07993 * 119.60550 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0881 -1.2038 -0.0382 9 7 1.3242 -2.3902 0.0468 10 6 0.1577 -2.5284 0.9223 11 6 0.5690 -3.2064 2.2038 12 8 1.7186 -3.5394 2.3691 13 8 -0.3416 -3.4393 3.1621 14 6 1.7242 -3.4298 -0.7120 15 8 2.7282 -3.3375 -1.3863 16 6 0.9241 -4.7068 -0.7227 17 1 0.6415 -4.9836 0.2929 18 6 1.7344 -5.8431 -1.3815 19 6 0.6381 -6.6578 -2.1006 20 6 -0.4719 -5.6685 -2.3760 21 6 -1.5471 -5.7354 -3.2505 22 6 -2.4273 -4.6663 -3.3010 23 6 -2.2045 -3.5756 -2.4816 24 7 -1.1705 -3.5446 -1.6666 25 6 -0.3109 -4.5469 -1.5853 26 1 -0.4850 0.8400 0.0004 27 1 -0.2471 -1.5416 1.1469 28 1 -0.6030 -3.1279 0.4220 29 1 -0.0304 -3.8764 3.9666 30 1 2.4520 -5.4425 -2.0977 31 1 2.2385 -6.4473 -0.6272 32 1 0.2787 -7.4601 -1.4560 33 1 1.0218 -7.0659 -3.0357 34 1 -1.6947 -6.6019 -3.8779 35 1 -3.2746 -4.6850 -3.9705 36 1 -2.8840 -2.7369 -2.5133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:41 Heat of formation + Delta-G solvation = -98.092593 kcal Electronic energy + Delta-G solvation = -23896.477017 eV Core-core repulsion = 20345.119915 eV Total energy + Delta-G solvation = -3551.357102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.07908 -41.14590 -39.91882 -37.35775 -36.92155 -36.36413 -33.98423 -33.31391 -30.29309 -29.67760 -29.25456 -26.61923 -24.39772 -23.46528 -22.75048 -22.34904 -20.34914 -19.16138 -18.93412 -18.38267 -17.60518 -17.41223 -17.08044 -16.77126 -16.54895 -16.10904 -15.81910 -15.36618 -14.98857 -14.53357 -14.39394 -14.09172 -13.90843 -13.66178 -13.35974 -13.18952 -12.97475 -12.79164 -12.72392 -12.50921 -12.46807 -12.39309 -12.12954 -11.96537 -11.61640 -10.99622 -10.73385 -10.50071 -10.05058 -9.60960 -9.53371 -8.30356 -6.19054 0.16892 0.45590 1.24729 1.37997 1.39245 1.48737 1.75134 2.16029 2.39232 2.81188 3.00593 3.04340 3.17064 3.49024 3.77948 3.93692 3.99412 4.15532 4.23538 4.33421 4.45345 4.52664 4.56931 4.68332 4.70792 4.89338 4.98263 5.07430 5.11361 5.24942 5.28675 5.35935 5.44894 5.61695 5.87113 6.18893 6.43457 7.04173 7.10314 7.18616 7.33201 7.93062 8.68529 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.006835 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.009796 B = 4095.310304 C = 4523.822700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.280 1.280 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.344 4.344 8 H 0.059 0.941 9 N -0.427 5.427 10 C 0.106 3.894 11 C 0.458 3.542 12 O -0.549 6.549 13 O -0.507 6.507 14 C 0.477 3.523 15 O -0.614 6.614 16 C -0.058 4.058 17 H 0.094 0.906 18 C -0.106 4.106 19 C -0.063 4.063 20 C -0.148 4.148 21 C -0.065 4.065 22 C -0.158 4.158 23 C 0.082 3.918 24 N -0.498 5.498 25 C 0.093 3.907 26 H 0.278 0.722 27 H 0.150 0.850 28 H 0.119 0.881 29 H 0.421 0.579 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -11.998 -2.261 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.205 1.205 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.472 4.472 8 H 0.077 0.923 9 N -0.144 5.144 10 C -0.019 4.019 11 C 0.301 3.699 12 O -0.439 6.439 13 O -0.320 6.320 14 C 0.266 3.734 15 O -0.500 6.500 16 C -0.081 4.081 17 H 0.112 0.888 18 C -0.144 4.144 19 C -0.100 4.100 20 C -0.150 4.150 21 C -0.090 4.090 22 C -0.178 4.178 23 C -0.076 4.076 24 N -0.206 5.206 25 C -0.044 4.044 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.282 0.718 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.191 0.809 35 H 0.194 0.806 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.218 -10.935 -2.343 14.492 hybrid contribution 0.780 0.329 0.425 0.947 sum -8.438 -10.605 -1.918 13.688 Atomic orbital electron populations 1.69575 1.06280 1.28644 1.47446 1.26194 0.96632 1.02150 0.94727 0.85108 0.78126 0.77007 0.78697 1.20540 1.18531 1.19473 1.19382 0.91228 0.83651 1.52940 0.92292 1.42950 1.26741 1.10659 1.34045 1.21543 0.90183 1.05366 0.84831 1.25086 0.83341 0.74883 0.86577 1.90648 1.22109 1.50458 1.80719 1.84543 1.43310 1.74278 1.29839 1.20788 0.86152 0.86477 0.79971 1.90439 1.29091 1.83919 1.46571 1.20833 0.92693 0.94710 0.99819 0.88796 1.22306 0.97661 0.94014 1.00387 1.20995 0.90772 0.95867 1.02332 1.21763 0.98603 0.97306 0.97318 1.21475 0.91563 0.99864 0.96118 1.22485 1.01396 0.93682 1.00198 1.23101 0.93445 0.99057 0.91962 1.66802 1.03668 1.28104 1.22064 1.21391 0.94550 0.91400 0.97058 0.91154 0.83382 0.86370 0.71819 0.91350 0.88441 0.86977 0.87754 0.80910 0.80622 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.50 10.75 21.66 0.23 -47.27 16 2 C 0.01 0.28 5.29 84.93 0.45 0.73 16 3 Si 0.99 44.41 29.55 68.60 2.03 46.44 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.34 -20.89 8.94 84.04 0.75 -20.14 16 8 H 0.06 3.84 7.72 -2.91 -0.02 3.81 16 9 N -0.43 -23.92 2.13 -639.59 -1.36 -25.29 16 10 C 0.11 5.17 5.12 85.63 0.44 5.61 16 11 C 0.46 19.94 7.39 71.24 0.53 20.47 16 12 O -0.55 -27.11 16.97 21.96 0.37 -26.74 16 13 O -0.51 -16.43 13.42 -51.41 -0.69 -17.12 16 14 C 0.48 26.04 6.56 87.66 0.57 26.62 16 15 O -0.61 -37.81 15.40 -3.08 -0.05 -37.86 16 16 C -0.06 -2.44 2.34 -11.59 -0.03 -2.46 16 17 H 0.09 3.77 6.69 -2.39 -0.02 3.76 16 18 C -0.11 -3.53 6.45 31.51 0.20 -3.33 16 19 C -0.06 -1.48 6.77 30.48 0.21 -1.27 16 20 C -0.15 -4.25 6.16 -19.59 -0.12 -4.37 16 21 C -0.06 -1.41 10.17 22.47 0.23 -1.18 16 22 C -0.16 -3.47 10.12 22.35 0.23 -3.24 16 23 C 0.08 2.50 11.18 84.71 0.95 3.45 16 24 N -0.50 -20.01 8.60 -182.97 -1.57 -21.59 16 25 C 0.09 3.58 6.06 42.72 0.26 3.84 16 26 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.15 7.74 5.18 -2.39 -0.01 7.73 16 28 H 0.12 5.45 4.77 -2.38 -0.01 5.44 16 29 H 0.42 8.97 9.10 -74.06 -0.67 8.29 16 30 H 0.07 2.67 6.90 -2.38 -0.02 2.65 16 31 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.17 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -81.86 307.96 4.09 -77.77 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.47 Total: 26.94 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 4.66 Total: 24.72 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -2.70 Total: -94.14 kcal Atomic # 8 Polarization: -81.35 SS G_CDS: -0.36 Total: -81.72 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -81.86 4.09 -77.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.323 kcal (2) G-P(sol) polarization free energy of solvation -81.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds