Wall clock time and date at job start Tue Mar 31 2020 07:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47407 * 2 1 4 4 C 1.52998 * 109.47165 * 239.99402 * 2 1 3 5 5 C 1.50694 * 109.47152 * 175.00434 * 4 2 1 6 6 H 1.07995 * 120.00313 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00038 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99847 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.46881 * 60.00282 * 9 7 5 11 11 H 1.48500 * 109.46737 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47031 * 299.99909 * 9 7 5 13 13 S 1.81408 * 109.47002 * 119.99458 * 2 1 3 14 14 C 1.76194 * 103.00065 * 290.14486 * 13 2 1 15 15 C 1.39080 * 119.96232 * 353.48981 * 14 13 2 16 16 C 1.37834 * 120.03496 * 179.72614 * 15 14 13 17 17 C 1.39388 * 119.96372 * 0.57153 * 16 15 14 18 18 C 1.48402 * 120.03961 * 179.72550 * 17 16 15 19 19 N 1.34066 * 126.67994 * 180.02562 * 18 17 16 20 20 N 1.28983 * 107.26687 * 179.97438 * 19 18 17 21 21 N 1.28726 * 108.95124 * 359.97438 * 20 19 18 22 22 H 0.97002 * 125.33804 * 180.02562 * 21 20 19 23 23 N 1.28866 * 109.32337 * 359.72462 * 21 20 19 24 24 C 1.39394 * 119.92560 * 359.70310 * 17 16 15 25 25 C 1.37829 * 119.96242 * 0.02562 * 24 17 16 26 26 H 1.08995 * 109.47140 * 54.58481 * 1 2 3 27 27 H 1.08996 * 109.47236 * 174.59065 * 1 2 3 28 28 H 1.09000 * 109.47003 * 294.59064 * 1 2 3 29 29 H 1.08998 * 109.47053 * 295.00497 * 4 2 1 30 30 H 1.08992 * 109.46860 * 55.00164 * 4 2 1 31 31 H 0.97004 * 120.00338 * 180.02562 * 8 7 5 32 32 H 1.07994 * 119.98536 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.02029 * 180.27817 * 16 15 14 34 34 H 1.08006 * 120.01889 * 180.02562 * 24 17 16 35 35 H 1.07998 * 119.98323 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5418 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5396 7 6 4.2303 -1.1930 -2.3582 8 7 3.5763 -1.8373 -3.2998 9 14 6.0920 -1.0607 -2.4372 10 1 6.6844 -1.6868 -1.2280 11 1 6.5869 -1.7610 -3.6496 12 1 6.4844 0.3702 -2.4965 13 16 2.1346 -0.8550 1.4813 14 6 1.7093 0.2555 2.7814 15 6 1.1863 1.5088 2.4811 16 6 0.8478 2.3765 3.4971 17 6 1.0410 2.0021 4.8257 18 6 0.6828 2.9375 5.9208 19 7 0.8122 2.7169 7.2368 20 7 0.3904 3.7731 7.8453 21 7 0.0074 4.6353 6.9695 22 1 -0.3519 5.5143 7.1673 23 7 0.1822 4.1500 5.7886 24 6 1.5706 0.7479 5.1248 25 6 1.9029 -0.1197 4.1066 26 1 -0.3633 0.5955 -0.8375 27 1 -0.3633 -1.0230 -0.0969 28 1 -0.3633 0.4276 0.9345 29 1 1.7516 -1.7716 -1.2054 30 1 1.6054 -0.2619 -2.1368 31 1 4.0606 -2.2442 -4.0352 32 1 1.0408 1.8003 1.4515 33 1 0.4375 3.3479 3.2637 34 1 1.7206 0.4560 6.1538 35 1 2.3128 -1.0916 4.3379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603467023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:02 Heat of formation + Delta-G solvation = 116.415451 kcal Electronic energy + Delta-G solvation = -19270.130571 eV Core-core repulsion = 16203.120858 eV Total energy + Delta-G solvation = -3067.009713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.43411 -40.04774 -36.51861 -35.41872 -34.64379 -34.10841 -32.00153 -31.54292 -29.34244 -25.87604 -25.54266 -25.24556 -23.62393 -22.75463 -22.01716 -20.16653 -18.63382 -18.44062 -18.11638 -17.58686 -16.57796 -16.48308 -16.03471 -15.43323 -14.97937 -14.69524 -14.56601 -14.29010 -13.99983 -13.82676 -13.49921 -13.29544 -13.22576 -12.67601 -12.61719 -12.43138 -12.39813 -12.34775 -12.10662 -12.00364 -11.91281 -11.44964 -11.23098 -10.81398 -10.50381 -10.32582 -9.99451 -8.23972 -8.18255 -6.26293 -0.36077 0.17933 0.39868 0.70705 1.26713 1.42110 1.44326 1.45015 1.51683 1.68832 2.43088 2.69502 2.74798 3.17113 3.17904 3.92572 3.97304 4.07321 4.18154 4.20108 4.36875 4.43654 4.48577 4.59818 4.66475 4.88547 4.98914 5.05087 5.21181 5.25244 5.33462 5.40535 5.41591 5.52512 5.63859 5.79122 5.80870 6.20037 6.85890 7.13775 7.41598 8.93118 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030336 B = 0.003141 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.780190 B = 8911.730521 C = 9140.120971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 H 0.086 0.914 4 C 0.045 3.955 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.267 1.267 13 S -0.119 6.119 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.052 4.052 17 C -0.048 4.048 18 C 0.218 3.782 19 N -0.294 5.294 20 N -0.057 5.057 21 N -0.201 5.201 22 H 0.494 0.506 23 N -0.298 5.298 24 C -0.052 4.052 25 C -0.114 4.114 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.018 0.982 31 H 0.263 0.737 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 12.340 18.713 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.185 4.185 3 H 0.105 0.895 4 C 0.007 3.993 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.192 1.192 13 S 0.130 5.870 14 C -0.182 4.182 15 C -0.172 4.172 16 C -0.074 4.074 17 C -0.054 4.054 18 C -0.061 4.061 19 N -0.166 5.166 20 N -0.052 5.052 21 N -0.052 5.052 22 H 0.353 0.647 23 N -0.151 5.151 24 C -0.074 4.074 25 C -0.138 4.138 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.020 11.300 19.098 23.596 hybrid contribution 0.202 1.365 -0.940 1.670 sum -7.818 12.665 18.158 23.478 Atomic orbital electron populations 1.22108 0.92056 1.02953 1.02852 1.23501 0.98832 1.01407 0.94739 0.89538 1.18826 0.95422 0.94430 0.90616 1.21551 0.92946 1.34235 1.08011 0.91898 1.25815 1.03089 0.94963 0.95367 1.70058 1.37501 1.36879 1.12773 0.85648 0.80219 0.78655 0.77491 1.19543 1.21043 1.19207 1.86037 1.73976 1.28617 0.98397 1.22392 1.00282 0.97774 0.97796 1.21301 1.02379 0.93023 1.00465 1.21118 0.96384 0.99666 0.90245 1.17275 1.06083 0.92956 0.89122 1.23680 0.99675 0.90933 0.91838 1.76069 1.19033 1.17055 1.04481 1.78831 1.11401 0.95341 1.19594 1.47768 1.39416 1.18020 0.99955 0.64683 1.74915 1.20939 1.11433 1.07787 1.21153 0.94775 0.91272 1.00172 1.20840 1.02236 1.01048 0.89699 0.90747 0.92321 0.90992 0.98167 0.96429 0.92833 0.84605 0.83356 0.83115 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.72 71.98 0.63 -3.74 16 2 C -0.06 -2.16 1.98 30.59 0.06 -2.10 16 3 H 0.09 3.23 6.82 -2.39 -0.02 3.21 16 4 C 0.05 2.25 4.45 29.85 0.13 2.38 16 5 C -0.53 -28.91 8.53 25.60 0.22 -28.69 16 6 H 0.06 3.36 7.60 -2.91 -0.02 3.34 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 S -0.12 -4.42 20.61 -56.49 -1.16 -5.59 16 14 C -0.07 -2.04 5.97 22.68 0.14 -1.90 16 15 C -0.15 -3.97 8.02 22.38 0.18 -3.79 16 16 C -0.05 -1.21 9.69 22.45 0.22 -1.00 16 17 C -0.05 -1.13 5.88 -20.01 -0.12 -1.24 16 18 C 0.22 4.94 7.93 137.35 1.09 6.03 16 19 N -0.29 -6.84 12.23 -52.20 -0.64 -7.48 16 20 N -0.06 -1.06 13.47 37.02 0.50 -0.56 16 21 N -0.20 -2.59 7.90 37.02 0.29 -2.30 16 22 H 0.49 1.22 8.96 -347.54 -3.12 -1.89 16 23 N -0.30 -5.57 12.08 -52.15 -0.63 -6.19 16 24 C -0.05 -1.20 9.69 22.45 0.22 -0.99 16 25 C -0.11 -2.97 9.78 22.38 0.22 -2.75 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.92 6.12 -2.39 -0.01 1.91 16 29 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.14 3.60 4.99 -2.91 -0.01 3.58 16 33 H 0.15 2.88 7.88 -2.91 -0.02 2.86 16 34 H 0.15 3.02 7.88 -2.91 -0.02 2.99 16 35 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -66.87 315.71 2.13 -64.74 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -1.98 Total: 3.45 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.44 Total: -37.01 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -0.19 Total: -71.67 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.16 Total: -5.59 kcal Total: -66.87 2.13 -64.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603467023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.151 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds