Wall clock time and date at job start Tue Mar 31 2020 07:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99682 * 2 1 3 5 5 C 1.50701 * 109.47062 * 185.00290 * 4 2 1 6 6 H 1.08003 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99744 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00035 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46982 * 90.00192 * 9 7 5 11 11 H 1.48504 * 109.46801 * 210.00403 * 9 7 5 12 12 H 1.48506 * 109.46991 * 330.00004 * 9 7 5 13 13 S 1.81402 * 109.47419 * 239.99708 * 2 1 3 14 14 C 1.76197 * 102.99858 * 69.49133 * 13 2 1 15 15 C 1.39079 * 119.96384 * 186.47902 * 14 13 2 16 16 C 1.37833 * 120.03873 * 180.02562 * 15 14 13 17 17 C 1.39386 * 119.96498 * 0.02562 * 16 15 14 18 18 C 1.48397 * 120.04070 * 179.72000 * 17 16 15 19 19 N 1.34072 * 126.67514 * 0.02602 * 18 17 16 20 20 N 1.28989 * 107.26545 * 179.97438 * 19 18 17 21 21 N 1.28735 * 108.94858 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.33116 * 180.02562 * 21 20 19 23 23 N 1.28866 * 109.32583 * 359.76873 * 21 20 19 24 24 C 1.39399 * 119.92592 * 359.97438 * 17 16 15 25 25 C 1.37839 * 119.95849 * 0.02562 * 24 17 16 26 26 H 1.08998 * 109.47354 * 305.64783 * 1 2 3 27 27 H 1.08994 * 109.47234 * 65.65275 * 1 2 3 28 28 H 1.09008 * 109.47197 * 185.64741 * 1 2 3 29 29 H 1.08996 * 109.47295 * 304.99955 * 4 2 1 30 30 H 1.08992 * 109.47411 * 65.00393 * 4 2 1 31 31 H 0.97007 * 119.99554 * 179.97438 * 8 7 5 32 32 H 1.08007 * 119.98332 * 359.97438 * 15 14 13 33 33 H 1.08007 * 120.01848 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.01960 * 180.02562 * 24 17 16 35 35 H 1.08000 * 119.97627 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0790 -0.0860 0.5392 7 6 4.2304 -1.1933 2.3579 8 7 5.5412 -1.1009 2.4130 9 14 3.3015 -2.1085 3.6955 10 1 3.1700 -3.5384 3.3171 11 1 4.0454 -2.0017 4.9764 12 1 1.9507 -1.5127 3.8564 13 16 2.1347 -0.8552 -1.4811 14 6 1.6998 0.2502 -2.7824 15 6 1.8861 -0.1291 -4.1074 16 6 1.5469 0.7346 -5.1266 17 6 1.0173 1.9891 -4.8287 18 6 0.6573 2.9228 -5.9245 19 7 0.7836 2.6997 -7.2405 20 7 0.3602 3.7547 -7.8500 21 7 -0.0219 4.6180 -6.9749 22 1 -0.3828 5.4962 -7.1736 23 7 0.1451 4.1306 -5.7937 24 6 0.8312 2.3678 -3.5001 25 6 1.1715 1.5016 -2.4833 26 1 -0.3634 0.5989 0.8351 27 1 -0.3633 0.4236 -0.9362 28 1 -0.3634 -1.0227 0.1011 29 1 1.6053 -0.2617 2.1370 30 1 1.7517 -1.7714 1.2057 31 1 6.0255 -1.5076 3.1485 32 1 2.2976 -1.1007 -4.3379 33 1 1.6921 0.4399 -6.1555 34 1 0.4206 3.3392 -3.2676 35 1 1.0278 1.7948 -1.4539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603467024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:23 Heat of formation + Delta-G solvation = 138.935710 kcal Electronic energy + Delta-G solvation = -19285.545398 eV Core-core repulsion = 16219.512237 eV Total energy + Delta-G solvation = -3066.033161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 4.02 seconds Orbital eigenvalues (eV) -44.58412 -38.99330 -34.96180 -34.52509 -33.70096 -32.25876 -30.93373 -30.53687 -28.09777 -24.97043 -24.60142 -23.24626 -22.48420 -21.72848 -20.44695 -19.34013 -17.45668 -17.28127 -16.81226 -16.45065 -15.25080 -15.06729 -14.53132 -14.25736 -13.88544 -13.55727 -13.28051 -12.90814 -12.81105 -12.54361 -12.35794 -12.17456 -11.88264 -11.55603 -11.44126 -11.29439 -11.08090 -11.02962 -10.95841 -10.48045 -10.00334 -9.80408 -9.48893 -9.33169 -9.17708 -8.95733 -8.59538 -6.89713 -6.08584 -4.07980 0.62039 1.04741 1.44094 2.00305 2.08051 2.25280 2.99369 3.26499 3.34447 3.35036 3.60234 3.79347 4.08116 4.39208 4.94377 4.98137 5.15788 5.24449 5.31275 5.37667 5.41474 5.48706 5.58251 5.69308 5.77383 6.03806 6.13504 6.14979 6.28488 6.32758 6.38446 6.41714 6.47277 6.84946 6.94344 7.07220 7.64042 7.99659 8.44964 8.97502 9.51472 11.04072 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038893 B = 0.003059 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.742834 B = 9150.540796 C = 9278.508447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.063 4.063 3 H 0.090 0.910 4 C 0.003 3.997 5 C -0.523 4.523 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 S -0.062 6.062 14 C -0.058 4.058 15 C -0.115 4.115 16 C -0.054 4.054 17 C -0.052 4.052 18 C 0.234 3.766 19 N -0.272 5.272 20 N -0.054 5.054 21 N -0.231 5.231 22 H 0.474 0.526 23 N -0.301 5.301 24 C -0.055 4.055 25 C -0.146 4.146 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 8.806 -15.019 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 H 0.108 0.892 4 C -0.036 4.036 5 C -0.561 4.561 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.191 1.191 13 S 0.189 5.811 14 C -0.173 4.173 15 C -0.140 4.140 16 C -0.076 4.076 17 C -0.060 4.060 18 C -0.046 4.046 19 N -0.146 5.146 20 N -0.049 5.049 21 N -0.077 5.077 22 H 0.328 0.672 23 N -0.152 5.152 24 C -0.077 4.077 25 C -0.171 4.171 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.312 7.775 -15.422 21.210 hybrid contribution -1.103 1.277 1.151 2.043 sum -13.415 9.052 -14.271 21.577 Atomic orbital electron populations 1.22228 0.94468 1.02834 1.01660 1.23554 0.96715 1.02697 0.96229 0.89182 1.19507 0.98176 0.95355 0.90516 1.21111 0.89071 1.35882 1.10011 0.90056 1.24977 0.94701 0.95724 0.97681 1.69907 1.06481 1.44947 1.32169 0.86873 0.80425 0.80771 0.81807 1.20163 1.21278 1.19062 1.86054 1.71842 1.26691 0.96505 1.22541 0.98271 0.97912 0.98580 1.20690 1.02615 1.00458 0.90191 1.21006 0.95265 0.91581 0.99756 1.17107 1.07244 0.92847 0.88758 1.23756 0.98362 0.90512 0.91923 1.76086 1.18113 1.16068 1.04295 1.78880 1.11315 0.95194 1.19523 1.47699 1.41406 1.17558 1.01035 0.67247 1.74956 1.21305 1.12145 1.06838 1.20983 0.96829 0.99198 0.90699 1.21228 1.02579 0.93340 0.99913 0.91825 0.92660 0.91767 0.94620 0.96000 0.92639 0.84792 0.84667 0.85180 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.71 37.16 0.32 -1.91 16 2 C -0.06 -1.16 1.98 -26.73 -0.05 -1.21 16 3 H 0.09 1.65 6.84 -51.92 -0.36 1.29 16 4 C 0.00 0.07 3.52 -27.88 -0.10 -0.03 16 5 C -0.52 -14.13 9.09 -34.44 -0.31 -14.45 16 6 H 0.08 2.39 7.84 -52.48 -0.41 1.98 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 9 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 S -0.06 -1.12 20.61 -107.50 -2.22 -3.34 16 14 C -0.06 -0.89 5.97 -38.96 -0.23 -1.12 16 15 C -0.11 -1.57 9.78 -39.42 -0.39 -1.96 16 16 C -0.05 -0.68 9.69 -39.30 -0.38 -1.06 16 17 C -0.05 -0.68 5.88 -104.85 -0.62 -1.29 16 18 C 0.23 2.95 7.93 -156.28 -1.24 1.71 16 19 N -0.27 -3.49 12.23 32.15 0.39 -3.10 16 20 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 21 N -0.23 -1.85 7.90 60.35 0.48 -1.38 16 22 H 0.47 1.39 8.96 -340.36 -3.05 -1.66 16 23 N -0.30 -3.26 12.08 32.17 0.39 -2.87 16 24 C -0.05 -0.70 9.69 -39.30 -0.38 -1.08 16 25 C -0.15 -2.06 8.00 -39.41 -0.32 -2.38 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.73 6.08 -51.93 -0.32 0.41 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.04 0.79 7.20 -51.93 -0.37 0.41 16 30 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.14 1.51 7.88 -52.48 -0.41 1.09 16 34 H 0.13 1.45 7.88 -52.49 -0.41 1.03 16 35 H 0.13 1.84 4.99 -52.49 -0.26 1.58 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -31.82 312.06 -9.55 -41.37 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.42 Total: -2.74 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -3.79 Total: -22.89 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 2.84 Total: -33.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.22 Total: -3.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.82 -9.55 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603467024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.305 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds