Wall clock time and date at job start Tue Mar 31 2020 07:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99682 * 2 1 3 5 5 C 1.50701 * 109.47062 * 185.00290 * 4 2 1 6 6 H 1.08003 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99744 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00035 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46982 * 90.00192 * 9 7 5 11 11 H 1.48504 * 109.46801 * 210.00403 * 9 7 5 12 12 H 1.48506 * 109.46991 * 330.00004 * 9 7 5 13 13 S 1.81402 * 109.47419 * 239.99708 * 2 1 3 14 14 C 1.76197 * 102.99858 * 69.49133 * 13 2 1 15 15 C 1.39079 * 119.96384 * 186.47902 * 14 13 2 16 16 C 1.37833 * 120.03873 * 180.02562 * 15 14 13 17 17 C 1.39386 * 119.96498 * 0.02562 * 16 15 14 18 18 C 1.48397 * 120.04070 * 179.72000 * 17 16 15 19 19 N 1.34072 * 126.67514 * 0.02602 * 18 17 16 20 20 N 1.28989 * 107.26545 * 179.97438 * 19 18 17 21 21 N 1.28735 * 108.94858 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.33116 * 180.02562 * 21 20 19 23 23 N 1.28866 * 109.32583 * 359.76873 * 21 20 19 24 24 C 1.39399 * 119.92592 * 359.97438 * 17 16 15 25 25 C 1.37839 * 119.95849 * 0.02562 * 24 17 16 26 26 H 1.08998 * 109.47354 * 305.64783 * 1 2 3 27 27 H 1.08994 * 109.47234 * 65.65275 * 1 2 3 28 28 H 1.09008 * 109.47197 * 185.64741 * 1 2 3 29 29 H 1.08996 * 109.47295 * 304.99955 * 4 2 1 30 30 H 1.08992 * 109.47411 * 65.00393 * 4 2 1 31 31 H 0.97007 * 119.99554 * 179.97438 * 8 7 5 32 32 H 1.08007 * 119.98332 * 359.97438 * 15 14 13 33 33 H 1.08007 * 120.01848 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.01960 * 180.02562 * 24 17 16 35 35 H 1.08000 * 119.97627 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0790 -0.0860 0.5392 7 6 4.2304 -1.1933 2.3579 8 7 5.5412 -1.1009 2.4130 9 14 3.3015 -2.1085 3.6955 10 1 3.1700 -3.5384 3.3171 11 1 4.0454 -2.0017 4.9764 12 1 1.9507 -1.5127 3.8564 13 16 2.1347 -0.8552 -1.4811 14 6 1.6998 0.2502 -2.7824 15 6 1.8861 -0.1291 -4.1074 16 6 1.5469 0.7346 -5.1266 17 6 1.0173 1.9891 -4.8287 18 6 0.6573 2.9228 -5.9245 19 7 0.7836 2.6997 -7.2405 20 7 0.3602 3.7547 -7.8500 21 7 -0.0219 4.6180 -6.9749 22 1 -0.3828 5.4962 -7.1736 23 7 0.1451 4.1306 -5.7937 24 6 0.8312 2.3678 -3.5001 25 6 1.1715 1.5016 -2.4833 26 1 -0.3634 0.5989 0.8351 27 1 -0.3633 0.4236 -0.9362 28 1 -0.3634 -1.0227 0.1011 29 1 1.6053 -0.2617 2.1370 30 1 1.7517 -1.7714 1.2057 31 1 6.0255 -1.5076 3.1485 32 1 2.2976 -1.1007 -4.3379 33 1 1.6921 0.4399 -6.1555 34 1 0.4206 3.3392 -3.2676 35 1 1.0278 1.7948 -1.4539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603467024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:21 Heat of formation + Delta-G solvation = 119.275776 kcal Electronic energy + Delta-G solvation = -19286.397917 eV Core-core repulsion = 16219.512237 eV Total energy + Delta-G solvation = -3066.885680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 7.27 seconds Orbital eigenvalues (eV) -45.43694 -40.05832 -36.56002 -35.42318 -34.64765 -34.17557 -32.05403 -31.57139 -29.79546 -25.87921 -25.54928 -24.94998 -23.60497 -22.75081 -21.95822 -20.17121 -18.88860 -18.60122 -18.12022 -17.61146 -16.56672 -16.46031 -16.00503 -15.43067 -14.99818 -14.81696 -14.54072 -14.35724 -14.09206 -13.91230 -13.69806 -13.41877 -13.25478 -12.73775 -12.61245 -12.42370 -12.35654 -12.15434 -12.00775 -11.97285 -11.73707 -11.53720 -11.40427 -10.83707 -10.67953 -10.33322 -10.00525 -8.28706 -8.18982 -6.27146 -0.37003 0.17376 0.38709 0.68944 1.25811 1.39109 1.39191 1.44599 1.49876 1.66469 2.38524 2.68719 2.73809 3.11932 3.17246 3.90885 3.95690 4.00894 4.14739 4.18859 4.35471 4.42746 4.45941 4.58859 4.65377 4.87729 4.93417 5.03562 5.09169 5.23536 5.23878 5.31931 5.35605 5.40792 5.63229 5.63566 5.79589 6.30698 6.80300 7.13214 7.35493 8.92629 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038893 B = 0.003059 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.742834 B = 9150.540796 C = 9278.508447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 H 0.083 0.917 4 C 0.004 3.996 5 C -0.520 4.520 6 H 0.041 0.959 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.239 1.239 13 S -0.124 6.124 14 C -0.067 4.067 15 C -0.116 4.116 16 C -0.052 4.052 17 C -0.048 4.048 18 C 0.218 3.782 19 N -0.294 5.294 20 N -0.057 5.057 21 N -0.200 5.200 22 H 0.494 0.506 23 N -0.298 5.298 24 C -0.052 4.052 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.264 0.736 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 9.905 -15.633 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 H 0.102 0.898 4 C -0.034 4.034 5 C -0.558 4.558 6 H 0.059 0.941 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.163 1.163 13 S 0.125 5.875 14 C -0.182 4.182 15 C -0.140 4.140 16 C -0.074 4.074 17 C -0.055 4.055 18 C -0.061 4.061 19 N -0.167 5.167 20 N -0.051 5.051 21 N -0.051 5.051 22 H 0.353 0.647 23 N -0.150 5.150 24 C -0.074 4.074 25 C -0.172 4.172 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.988 8.915 -16.077 23.719 hybrid contribution -0.286 1.132 1.104 1.607 sum -15.275 10.046 -14.973 23.631 Atomic orbital electron populations 1.22155 0.91237 1.03577 1.03230 1.23393 0.99160 1.01391 0.94224 0.89827 1.19433 0.94820 0.96106 0.93057 1.21387 0.91744 1.34276 1.08434 0.94084 1.25933 0.95490 0.97034 1.00620 1.70074 1.08556 1.47023 1.33468 0.85778 0.80071 0.79381 0.78168 1.19727 1.21341 1.16255 1.86099 1.73993 1.28810 0.98618 1.22366 1.00175 0.97897 0.97751 1.20840 1.02257 1.01087 0.89790 1.21150 0.94746 0.91344 1.00154 1.17276 1.06090 0.92930 0.89159 1.23672 0.99530 0.91092 0.91840 1.76074 1.19035 1.17109 1.04454 1.78836 1.11504 0.95217 1.19590 1.47768 1.39449 1.17956 0.99966 0.64670 1.74913 1.20804 1.11539 1.07769 1.21130 0.96401 0.99644 0.90224 1.21311 1.02347 0.92998 1.00524 0.90034 0.91185 0.91478 0.93544 0.95808 0.92695 0.84046 0.83139 0.83268 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.71 71.98 0.63 -3.25 16 2 C -0.05 -1.91 1.98 30.59 0.06 -1.85 16 3 H 0.08 3.06 6.84 -2.39 -0.02 3.04 16 4 C 0.00 0.19 3.52 29.85 0.10 0.29 16 5 C -0.52 -28.83 9.09 25.60 0.23 -28.60 16 6 H 0.04 2.54 7.84 -2.91 -0.02 2.52 16 7 C 0.01 0.34 5.47 84.65 0.46 0.80 16 8 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 9 Si 0.94 43.09 27.47 68.60 1.88 44.97 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 13 S -0.12 -4.60 20.61 -56.49 -1.16 -5.76 16 14 C -0.07 -2.05 5.97 22.67 0.14 -1.91 16 15 C -0.12 -3.10 9.78 22.38 0.22 -2.88 16 16 C -0.05 -1.24 9.69 22.45 0.22 -1.02 16 17 C -0.05 -1.15 5.88 -20.01 -0.12 -1.27 16 18 C 0.22 5.02 7.93 137.34 1.09 6.11 16 19 N -0.29 -6.96 12.23 -52.20 -0.64 -7.60 16 20 N -0.06 -1.07 13.47 37.02 0.50 -0.57 16 21 N -0.20 -2.63 7.90 37.02 0.29 -2.34 16 22 H 0.49 1.31 8.96 -347.53 -3.12 -1.81 16 23 N -0.30 -5.63 12.08 -52.15 -0.63 -6.26 16 24 C -0.05 -1.23 9.69 22.45 0.22 -1.01 16 25 C -0.15 -3.99 8.00 22.38 0.18 -3.81 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.69 6.08 -2.39 -0.01 1.68 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.05 1.94 7.20 -2.39 -0.02 1.93 16 30 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 31 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 32 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.15 3.11 7.88 -2.91 -0.02 3.09 16 34 H 0.15 2.91 7.88 -2.91 -0.02 2.89 16 35 H 0.14 3.60 4.99 -2.91 -0.01 3.58 16 Total: -1.00 -70.15 312.06 1.94 -68.21 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.03 Total: 6.75 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.43 Total: -38.42 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -0.18 Total: -75.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.16 Total: -5.76 kcal Total: -70.15 1.94 -68.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603467024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.490 kcal (2) G-P(sol) polarization free energy of solvation -70.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.27 seconds