Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37854 * 120.01819 * 2 1 4 4 C 1.39064 * 120.03156 * 179.72545 * 3 2 1 5 5 S 1.76208 * 119.95900 * 180.27431 * 4 3 2 6 6 C 1.81403 * 102.99925 * 180.27304 * 5 4 3 7 7 C 1.52996 * 109.47135 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47010 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00345 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00155 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99458 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00084 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47079 * 90.00282 * 12 10 8 14 14 H 1.48502 * 109.46800 * 209.99598 * 12 10 8 15 15 H 1.48502 * 109.47229 * 329.99690 * 12 10 8 16 16 C 1.39101 * 120.07880 * 0.54771 * 4 3 2 17 17 C 1.37815 * 120.03284 * 359.72914 * 16 4 3 18 18 C 1.39375 * 120.01686 * 180.27525 * 2 1 3 19 19 C 1.48394 * 120.03684 * 359.97438 * 18 2 1 20 20 N 1.34072 * 126.68278 * 359.69050 * 19 18 2 21 21 N 1.28982 * 107.26946 * 179.83496 * 20 19 18 22 22 N 1.28731 * 108.95166 * 0.43645 * 21 20 19 23 23 H 0.96994 * 125.33833 * 179.72825 * 22 21 20 24 24 N 1.28870 * 109.32355 * 359.72307 * 22 21 20 25 25 H 1.09002 * 109.47152 * 269.72729 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72829 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72810 * 1 2 3 28 28 H 1.07995 * 119.98119 * 359.97080 * 3 2 1 29 29 H 1.09004 * 109.46847 * 300.00309 * 6 5 4 30 30 H 1.09000 * 109.46727 * 59.99680 * 6 5 4 31 31 H 1.08994 * 109.47197 * 300.00285 * 7 6 5 32 32 H 1.09005 * 109.46622 * 59.99916 * 7 6 5 33 33 H 0.96996 * 119.99649 * 180.02562 * 11 10 8 34 34 H 1.07996 * 119.98164 * 179.74846 * 16 4 3 35 35 H 1.08000 * 120.01716 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1936 0.0000 4 6 3.5873 1.1940 0.0058 5 16 4.4669 2.7208 0.0131 6 6 6.2021 2.1921 0.0106 7 6 7.1104 3.4233 0.0158 8 6 8.5519 2.9840 0.0144 9 1 8.7959 1.9320 0.0097 10 6 9.5595 3.9253 0.0190 11 7 9.2623 5.2065 0.0252 12 14 11.3463 3.3808 0.0165 13 1 11.8199 3.2434 -1.3842 14 1 12.1732 4.3931 0.7214 15 1 11.4664 2.0734 0.7103 16 6 4.2848 -0.0095 0.0000 17 6 3.5984 -1.2046 -0.0057 18 6 2.2043 -1.2068 -0.0058 19 6 1.4635 -2.4926 -0.0114 20 7 0.1320 -2.6499 -0.0058 21 7 -0.1038 -3.9179 -0.0174 22 7 1.0168 -4.5516 -0.0206 23 1 1.1157 -5.5164 -0.0251 24 7 1.9866 -3.7029 -0.0170 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8876 -0.5181 27 1 -0.3633 0.8924 -0.5096 28 1 1.6567 2.1289 -0.0005 29 1 6.3999 1.5904 0.8977 30 1 6.3999 1.5989 -0.8822 31 1 6.9125 4.0245 -0.8715 32 1 6.9126 4.0168 0.9085 33 1 9.9711 5.8686 0.0281 34 1 5.3647 -0.0074 0.0004 35 1 4.1401 -2.1388 -0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609413044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = 136.346294 kcal Electronic energy + Delta-G solvation = -19071.880360 eV Core-core repulsion = 16005.734913 eV Total energy + Delta-G solvation = -3066.145446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.63013 -39.31782 -34.74808 -33.85428 -33.73506 -32.72382 -30.98737 -30.62376 -27.19947 -25.49505 -24.99437 -24.26938 -22.14375 -21.40013 -21.04411 -19.30264 -17.33135 -17.03375 -16.68107 -16.33211 -15.47133 -14.56725 -14.38403 -14.21271 -14.10697 -13.82374 -13.70662 -13.18683 -12.85018 -12.36460 -12.28518 -12.06258 -11.86422 -11.58123 -11.48643 -11.29303 -11.11470 -11.05849 -10.82656 -10.63291 -10.33671 -9.84782 -9.72229 -9.28915 -9.19345 -8.77190 -8.48469 -7.07750 -6.12558 -4.17562 0.56698 1.00782 1.36446 1.92212 2.04340 2.19750 2.94843 3.25807 3.32547 3.35279 3.55137 3.69081 4.03752 4.36854 4.79522 4.84641 5.10613 5.23487 5.24794 5.28385 5.40548 5.53044 5.70452 5.78733 5.82219 5.91495 5.99864 6.10731 6.20875 6.31642 6.36085 6.50128 6.58250 6.80945 7.45436 7.52286 7.82315 7.96642 8.18668 8.86915 9.46958 10.98279 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030291 B = 0.002881 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.133453 B = 9717.377458 C =10615.759624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.020 4.020 3 C -0.116 4.116 4 C -0.046 4.046 5 S -0.125 6.125 6 C -0.085 4.085 7 C 0.037 3.963 8 C -0.523 4.523 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.148 4.148 17 C -0.051 4.051 18 C -0.053 4.053 19 C 0.236 3.764 20 N -0.270 5.270 21 N -0.057 5.057 22 N -0.229 5.229 23 H 0.474 0.526 24 N -0.300 5.300 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.134 0.866 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 -16.572 -0.130 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.024 4.024 3 C -0.140 4.140 4 C -0.161 4.161 5 S 0.125 5.875 6 C -0.232 4.232 7 C -0.002 4.002 8 C -0.563 4.563 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.528 5.528 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.173 4.173 17 C -0.073 4.073 18 C -0.060 4.060 19 C -0.043 4.043 20 N -0.143 5.143 21 N -0.052 5.052 22 N -0.075 5.075 23 H 0.328 0.672 24 N -0.152 5.152 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.637 -15.529 -0.115 23.500 hybrid contribution 2.036 -1.913 0.011 2.794 sum -15.601 -17.443 -0.104 23.402 Atomic orbital electron populations 1.21201 0.89977 1.04230 1.03206 1.19790 0.96488 0.90977 0.95180 1.20579 0.91743 0.97700 1.04023 1.22284 0.96967 0.97901 0.98903 1.85767 1.05417 1.06881 1.89442 1.24094 0.89720 1.05274 1.04157 1.18928 0.92346 0.90192 0.98729 1.21050 0.90010 0.93087 1.52120 0.92306 1.25013 0.99425 0.94859 0.94909 1.69964 1.33031 1.00084 1.49736 0.86502 0.84299 0.78461 0.78220 1.20508 1.21065 1.19761 1.21210 1.00547 0.91061 1.04450 1.20983 0.92087 0.98399 0.95811 1.17036 0.91916 0.86305 1.10772 1.23688 0.88027 0.92328 1.00279 1.76132 1.13894 1.05613 1.18701 1.78901 1.11125 1.00525 1.14629 1.47686 1.01206 1.12353 1.46236 0.67241 1.74972 1.17589 0.99798 1.22815 0.90788 0.88352 0.91567 0.84823 0.90326 0.90330 0.95346 0.95338 0.92676 0.84673 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.18 36.01 0.33 -1.03 16 2 C -0.02 -0.25 5.90 -104.34 -0.62 -0.87 16 3 C -0.12 -1.57 9.43 -39.42 -0.37 -1.94 16 4 C -0.05 -0.70 6.12 -38.95 -0.24 -0.94 16 5 S -0.12 -2.20 21.92 -107.50 -2.36 -4.56 16 6 C -0.08 -1.67 4.27 37.16 0.16 -1.51 16 7 C 0.04 0.92 4.98 -27.89 -0.14 0.78 16 8 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 9 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 12 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 C -0.15 -2.12 9.35 -39.42 -0.37 -2.49 16 17 C -0.05 -0.65 9.69 -39.30 -0.38 -1.03 16 18 C -0.05 -0.69 5.88 -104.86 -0.62 -1.31 16 19 C 0.24 2.88 7.78 -156.28 -1.22 1.66 16 20 N -0.27 -3.22 9.07 32.15 0.29 -2.93 16 21 N -0.06 -0.57 13.47 60.35 0.81 0.24 16 22 N -0.23 -1.74 7.90 60.35 0.48 -1.26 16 23 H 0.47 1.25 8.96 -340.37 -3.05 -1.80 16 24 N -0.30 -3.17 12.08 32.17 0.39 -2.78 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.10 1.09 5.15 -51.93 -0.27 0.82 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.08 1.48 7.74 -51.92 -0.40 1.08 16 30 H 0.08 1.48 7.74 -51.92 -0.40 1.08 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 34 H 0.14 1.91 5.86 -52.49 -0.31 1.60 16 35 H 0.13 1.49 7.88 -52.49 -0.41 1.08 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -30.92 315.67 -10.28 -41.20 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.49 Total: -3.80 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -3.87 Total: -21.54 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 2.71 Total: -31.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.36 Total: -4.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.92 -10.28 -41.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609413044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.541 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds