Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37854 * 120.01819 * 2 1 4 4 C 1.39064 * 120.03156 * 179.72545 * 3 2 1 5 5 S 1.76208 * 119.95900 * 180.27431 * 4 3 2 6 6 C 1.81403 * 102.99925 * 180.27304 * 5 4 3 7 7 C 1.52996 * 109.47135 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47010 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00345 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00155 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99458 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00084 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47079 * 90.00282 * 12 10 8 14 14 H 1.48502 * 109.46800 * 209.99598 * 12 10 8 15 15 H 1.48502 * 109.47229 * 329.99690 * 12 10 8 16 16 C 1.39101 * 120.07880 * 0.54771 * 4 3 2 17 17 C 1.37815 * 120.03284 * 359.72914 * 16 4 3 18 18 C 1.39375 * 120.01686 * 180.27525 * 2 1 3 19 19 C 1.48394 * 120.03684 * 359.97438 * 18 2 1 20 20 N 1.34072 * 126.68278 * 359.69050 * 19 18 2 21 21 N 1.28982 * 107.26946 * 179.83496 * 20 19 18 22 22 N 1.28731 * 108.95166 * 0.43645 * 21 20 19 23 23 H 0.96994 * 125.33833 * 179.72825 * 22 21 20 24 24 N 1.28870 * 109.32355 * 359.72307 * 22 21 20 25 25 H 1.09002 * 109.47152 * 269.72729 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72829 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72810 * 1 2 3 28 28 H 1.07995 * 119.98119 * 359.97080 * 3 2 1 29 29 H 1.09004 * 109.46847 * 300.00309 * 6 5 4 30 30 H 1.09000 * 109.46727 * 59.99680 * 6 5 4 31 31 H 1.08994 * 109.47197 * 300.00285 * 7 6 5 32 32 H 1.09005 * 109.46622 * 59.99916 * 7 6 5 33 33 H 0.96996 * 119.99649 * 180.02562 * 11 10 8 34 34 H 1.07996 * 119.98164 * 179.74846 * 16 4 3 35 35 H 1.08000 * 120.01716 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1936 0.0000 4 6 3.5873 1.1940 0.0058 5 16 4.4669 2.7208 0.0131 6 6 6.2021 2.1921 0.0106 7 6 7.1104 3.4233 0.0158 8 6 8.5519 2.9840 0.0144 9 1 8.7959 1.9320 0.0097 10 6 9.5595 3.9253 0.0190 11 7 9.2623 5.2065 0.0252 12 14 11.3463 3.3808 0.0165 13 1 11.8199 3.2434 -1.3842 14 1 12.1732 4.3931 0.7214 15 1 11.4664 2.0734 0.7103 16 6 4.2848 -0.0095 0.0000 17 6 3.5984 -1.2046 -0.0057 18 6 2.2043 -1.2068 -0.0058 19 6 1.4635 -2.4926 -0.0114 20 7 0.1320 -2.6499 -0.0058 21 7 -0.1038 -3.9179 -0.0174 22 7 1.0168 -4.5516 -0.0206 23 1 1.1157 -5.5164 -0.0251 24 7 1.9866 -3.7029 -0.0170 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8876 -0.5181 27 1 -0.3633 0.8924 -0.5096 28 1 1.6567 2.1289 -0.0005 29 1 6.3999 1.5904 0.8977 30 1 6.3999 1.5989 -0.8822 31 1 6.9125 4.0245 -0.8715 32 1 6.9126 4.0168 0.9085 33 1 9.9711 5.8686 0.0281 34 1 5.3647 -0.0074 0.0004 35 1 4.1401 -2.1388 -0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609413044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = 118.829575 kcal Electronic energy + Delta-G solvation = -19072.639942 eV Core-core repulsion = 16005.734913 eV Total energy + Delta-G solvation = -3066.905028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.43960 -40.35034 -35.83867 -35.58066 -34.63753 -33.74691 -32.88917 -31.61347 -28.24762 -27.25454 -25.99110 -25.19072 -23.46531 -22.57845 -22.38264 -20.09755 -18.69654 -18.16539 -18.12089 -17.50456 -16.55935 -16.43367 -15.69557 -15.61447 -15.21436 -14.96618 -14.77598 -14.31127 -14.19138 -13.68089 -13.56303 -13.28104 -12.94359 -12.89663 -12.82477 -12.44543 -12.40868 -12.30189 -12.15719 -12.03543 -11.73006 -11.68803 -11.32278 -11.01396 -10.60499 -10.37110 -9.78938 -8.39765 -8.23108 -6.35996 -0.40859 0.18309 0.32494 0.56653 1.23722 1.42536 1.43673 1.44750 1.53361 1.55274 2.41120 2.63905 2.68839 3.11020 3.16536 3.81947 3.86694 4.15911 4.20019 4.23987 4.30617 4.39729 4.42968 4.55199 4.78965 4.84672 4.92335 4.95500 5.19059 5.24640 5.37304 5.39638 5.47171 5.56009 5.64128 5.73325 5.80055 6.10482 6.77985 7.14707 7.33569 8.88710 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030291 B = 0.002881 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.133453 B = 9717.377458 C =10615.759624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.114 4.114 4 C -0.060 4.060 5 S -0.144 6.144 6 C -0.072 4.072 7 C 0.043 3.957 8 C -0.541 4.541 9 H 0.069 0.931 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.970 3.030 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.260 1.260 16 C -0.154 4.154 17 C -0.049 4.049 18 C -0.051 4.051 19 C 0.219 3.781 20 N -0.284 5.284 21 N -0.059 5.059 22 N -0.200 5.200 23 H 0.494 0.506 24 N -0.300 5.300 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.414 -19.143 -0.139 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.026 4.026 3 C -0.138 4.138 4 C -0.175 4.175 5 S 0.104 5.896 6 C -0.220 4.220 7 C 0.004 3.996 8 C -0.580 4.580 9 H 0.087 0.913 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.794 3.206 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.184 1.184 16 C -0.178 4.178 17 C -0.071 4.071 18 C -0.057 4.057 19 C -0.060 4.060 20 N -0.156 5.156 21 N -0.053 5.053 22 N -0.051 5.051 23 H 0.353 0.647 24 N -0.152 5.152 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.227 -18.154 -0.126 25.725 hybrid contribution 2.041 -1.290 0.013 2.414 sum -16.186 -19.444 -0.113 25.300 Atomic orbital electron populations 1.21214 0.88351 1.04847 1.03787 1.20019 0.97625 0.90466 0.94453 1.20732 0.91072 0.98701 1.03341 1.22189 0.97403 0.96538 1.01326 1.85694 1.04040 1.09101 1.90791 1.23699 0.90639 1.02772 1.04871 1.18695 0.93184 0.91654 0.96044 1.21523 0.91275 0.93694 1.51539 0.91276 1.25990 1.04377 0.94822 0.94406 1.70101 1.34575 1.01408 1.50948 0.85376 0.78336 0.78390 0.78530 1.19734 1.20880 1.18417 1.21262 1.00617 0.91287 1.04654 1.21112 0.92258 0.98453 0.95316 1.17229 0.92089 0.87022 1.09398 1.23573 0.88292 0.92461 1.01685 1.76127 1.13799 1.06452 1.19269 1.78861 1.11557 1.00142 1.14774 1.47748 1.00149 1.13208 1.43954 0.64734 1.74926 1.18221 0.99668 1.22412 0.90088 0.88608 0.90096 0.83699 0.89581 0.89562 0.98054 0.98056 0.92558 0.84827 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.18 71.24 0.65 -1.72 16 2 C -0.02 -0.50 5.90 -19.68 -0.12 -0.62 16 3 C -0.11 -2.96 9.43 22.38 0.21 -2.75 16 4 C -0.06 -1.80 6.12 22.68 0.14 -1.67 16 5 S -0.14 -5.16 21.92 -56.49 -1.24 -6.40 16 6 C -0.07 -2.88 4.27 71.98 0.31 -2.57 16 7 C 0.04 2.21 4.98 29.84 0.15 2.36 16 8 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 9 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 10 C 0.00 0.15 5.46 84.66 0.46 0.61 16 11 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 12 Si 0.97 42.95 29.54 68.60 2.03 44.97 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 16 C -0.15 -4.28 9.35 22.38 0.21 -4.07 16 17 C -0.05 -1.19 9.69 22.45 0.22 -0.98 16 18 C -0.05 -1.23 5.88 -20.02 -0.12 -1.35 16 19 C 0.22 4.87 7.78 137.34 1.07 5.94 16 20 N -0.28 -6.15 9.07 -52.20 -0.47 -6.63 16 21 N -0.06 -1.03 13.47 37.02 0.50 -0.53 16 22 N -0.20 -2.47 7.90 37.02 0.29 -2.18 16 23 H 0.49 1.07 8.96 -347.54 -3.12 -2.05 16 24 N -0.30 -5.55 12.08 -52.15 -0.63 -6.18 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.93 5.15 -2.39 -0.01 1.92 16 27 H 0.08 1.29 8.08 -2.38 -0.02 1.27 16 28 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.09 3.27 7.74 -2.39 -0.02 3.25 16 30 H 0.09 3.27 7.74 -2.39 -0.02 3.25 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.13 3.69 5.86 -2.91 -0.02 3.67 16 35 H 0.15 3.03 7.88 -2.91 -0.02 3.01 16 Total: -1.00 -66.75 315.67 2.20 -64.55 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -1.98 Total: 4.01 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 3.42 Total: -36.21 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -0.03 Total: -70.92 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.24 Total: -6.40 kcal Total: -66.75 2.20 -64.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609413044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.382 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds