Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47363 * 299.99681 * 3 2 1 6 6 H 1.48505 * 109.47009 * 60.00073 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.38234 * 119.58994 * 124.72664 * 16 15 13 18 18 C 1.38595 * 119.18866 * 179.77406 * 17 16 15 19 19 C 1.38878 * 118.39791 * 0.48559 * 18 17 16 20 20 F 1.35096 * 120.44399 * 179.77254 * 19 18 17 21 21 C 1.38420 * 119.11294 * 359.75658 * 19 18 17 22 22 N 1.31847 * 119.58742 * 304.99899 * 16 15 13 23 23 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 24 24 N 1.30910 * 108.38789 * 0.02562 * 23 11 10 25 25 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 26 26 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 27 27 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 28 28 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 29 29 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 30 30 H 1.08003 * 120.40550 * 359.97438 * 17 16 15 31 31 H 1.07997 * 120.79738 * 180.21589 * 18 17 16 32 32 H 1.07998 * 119.63848 * 179.97438 * 21 19 18 33 33 H 1.07996 * 125.80538 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8880 2.3965 1.2126 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3370 -8.8514 -0.0026 17 6 -1.6685 -9.7594 -0.9908 18 6 -2.9270 -10.3399 -0.9806 19 6 -3.8144 -9.9755 0.0236 20 9 -5.0532 -10.5123 0.0703 21 6 -3.4124 -9.0553 0.9763 22 7 -2.2043 -8.5281 0.9364 23 6 -0.3512 -3.8199 0.0002 24 7 -0.0715 -2.5410 0.0003 25 1 -0.4850 0.8401 -0.0004 26 1 2.9301 -3.8707 -0.0031 27 1 1.8708 -6.3426 -0.0012 28 1 0.5769 -8.5321 -0.8916 29 1 0.5756 -8.5325 0.8884 30 1 -0.9545 -10.0157 -1.7595 31 1 -3.2122 -11.0550 -1.7380 32 1 -4.0957 -8.7656 1.7608 33 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625844898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = 44.169741 kcal Electronic energy + Delta-G solvation = -21337.533100 eV Core-core repulsion = 17701.177403 eV Total energy + Delta-G solvation = -3636.355698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -49.12423 -40.47997 -39.68525 -38.33681 -34.15762 -33.16002 -32.74435 -32.61364 -30.21092 -28.63972 -27.16831 -24.78930 -24.09677 -22.76312 -20.98787 -20.23290 -19.35169 -17.81974 -17.62304 -17.31356 -16.54315 -16.19310 -15.86101 -15.41863 -15.07823 -14.93560 -14.26549 -14.06043 -13.90031 -13.69462 -13.19709 -13.12333 -12.91393 -12.76547 -12.26100 -12.00700 -11.64963 -11.37553 -11.24872 -10.90166 -10.49153 -10.11008 -10.07639 -9.64261 -9.19316 -9.13208 -8.90305 -8.75266 -8.01551 -6.65093 -6.52523 -4.19272 0.73748 0.96837 2.88082 3.06652 3.07235 3.12685 3.36421 3.70486 3.74397 3.83714 3.92939 4.15193 4.41080 4.47730 4.56519 4.68891 4.81212 5.05245 5.11414 5.25357 5.31581 5.37801 5.62718 5.66342 5.76541 6.27786 6.43678 6.51286 6.94529 7.00619 7.17922 7.29067 7.79079 7.89976 8.23655 8.33530 8.68350 8.93050 9.42146 9.71675 10.43595 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.041487 B = 0.002870 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.747646 B = 9752.661862 C =10237.402877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.057 4.057 12 N -0.628 5.628 13 C 0.503 3.497 14 O -0.518 6.518 15 C -0.089 4.089 16 C 0.140 3.860 17 C -0.139 4.139 18 C -0.110 4.110 19 C 0.038 3.962 20 F -0.134 7.134 21 C 0.083 3.917 22 N -0.424 5.424 23 C -0.033 4.033 24 N -0.261 5.261 25 H 0.274 0.726 26 H 0.145 0.855 27 H 0.396 0.604 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -18.748 -1.388 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.162 4.162 12 N -0.271 5.271 13 C 0.287 3.713 14 O -0.394 6.394 15 C -0.130 4.130 16 C 0.002 3.998 17 C -0.159 4.159 18 C -0.137 4.137 19 C 0.017 3.983 20 F -0.112 7.112 21 C -0.076 4.076 22 N -0.132 5.132 23 C -0.209 4.209 24 N -0.092 5.092 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.229 0.771 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.183 0.817 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.545 -16.448 -0.747 16.474 hybrid contribution 0.762 -1.093 -0.685 1.498 sum 0.216 -17.541 -1.433 17.600 Atomic orbital electron populations 1.70231 1.06114 1.27794 1.35567 1.25638 0.95695 1.00245 0.95558 0.85775 0.79609 0.80356 0.78446 1.18721 1.19954 1.19942 1.19897 0.91634 0.80569 1.53445 0.86631 1.44549 1.04040 1.03299 1.39346 1.21255 0.96800 0.85419 1.20104 1.17260 0.94219 0.81341 1.23429 1.42467 1.08064 1.04500 1.72032 1.19931 0.84734 0.87779 0.78807 1.90637 1.25677 1.74520 1.48547 1.20572 0.93462 0.93523 1.05415 1.20696 0.95077 0.93103 0.90942 1.21864 0.96730 0.97708 0.99566 1.21574 0.93525 1.00611 0.97984 1.18866 0.81642 0.98710 0.99092 1.91508 1.38947 1.84631 1.96162 1.22938 0.94101 0.92882 0.97682 1.67553 1.01513 1.20275 1.23815 1.24107 0.98070 0.90719 1.07982 1.78250 0.90133 1.15142 1.25672 0.91567 0.83755 0.77113 0.87387 0.87036 0.83722 0.83638 0.81652 0.80808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.82 11.81 55.49 0.66 -21.17 16 2 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 3 Si 0.93 19.09 29.55 -169.99 -5.02 14.07 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.32 -8.63 10.25 -14.81 -0.15 -8.78 16 8 H 0.12 2.75 7.83 -52.48 -0.41 2.34 16 9 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 10 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 11 C -0.06 -1.32 6.90 -83.84 -0.58 -1.89 16 12 N -0.63 -10.78 5.47 -10.00 -0.05 -10.84 16 13 C 0.50 8.51 7.73 -10.99 -0.08 8.42 16 14 O -0.52 -11.22 12.49 5.54 0.07 -11.15 16 15 C -0.09 -0.97 6.10 -29.03 -0.18 -1.14 16 16 C 0.14 1.74 5.76 -82.59 -0.48 1.26 16 17 C -0.14 -1.32 9.71 -39.45 -0.38 -1.70 16 18 C -0.11 -1.04 10.16 -39.21 -0.40 -1.44 16 19 C 0.04 0.43 7.34 -39.28 -0.29 0.14 16 20 F -0.13 -1.50 17.28 2.25 0.04 -1.46 16 21 C 0.08 1.05 11.17 -17.47 -0.20 0.85 16 22 N -0.42 -6.24 9.22 -9.42 -0.09 -6.33 16 23 C -0.03 -0.89 10.85 -17.03 -0.18 -1.08 16 24 N -0.26 -7.72 10.40 30.80 0.32 -7.40 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 27 H 0.40 4.98 8.83 -40.82 -0.36 4.62 16 28 H 0.11 0.76 7.87 -51.93 -0.41 0.36 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.15 0.89 7.95 -52.48 -0.42 0.47 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.17 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -36.03 303.26 -5.49 -41.52 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -2.73 Total: 8.70 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.20 Total: -6.46 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.79 Total: -49.78 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.03 -5.49 -41.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625844898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.687 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds