Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47363 * 299.99681 * 3 2 1 6 6 H 1.48505 * 109.47009 * 60.00073 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.50701 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.38234 * 119.58994 * 124.72664 * 16 15 13 18 18 C 1.38595 * 119.18866 * 179.77406 * 17 16 15 19 19 C 1.38878 * 118.39791 * 0.48559 * 18 17 16 20 20 F 1.35096 * 120.44399 * 179.77254 * 19 18 17 21 21 C 1.38420 * 119.11294 * 359.75658 * 19 18 17 22 22 N 1.31847 * 119.58742 * 304.99899 * 16 15 13 23 23 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 24 24 N 1.30910 * 108.38789 * 0.02562 * 23 11 10 25 25 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 26 26 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 27 27 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 28 28 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 29 29 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 30 30 H 1.08003 * 120.40550 * 359.97438 * 17 16 15 31 31 H 1.07997 * 120.79738 * 180.21589 * 18 17 16 32 32 H 1.07998 * 119.63848 * 179.97438 * 21 19 18 33 33 H 1.07996 * 125.80538 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8880 2.3965 1.2126 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3370 -8.8514 -0.0026 17 6 -1.6685 -9.7594 -0.9908 18 6 -2.9270 -10.3399 -0.9806 19 6 -3.8144 -9.9755 0.0236 20 9 -5.0532 -10.5123 0.0703 21 6 -3.4124 -9.0553 0.9763 22 7 -2.2043 -8.5281 0.9364 23 6 -0.3512 -3.8199 0.0002 24 7 -0.0715 -2.5410 0.0003 25 1 -0.4850 0.8401 -0.0004 26 1 2.9301 -3.8707 -0.0031 27 1 1.8708 -6.3426 -0.0012 28 1 0.5769 -8.5321 -0.8916 29 1 0.5756 -8.5325 0.8884 30 1 -0.9545 -10.0157 -1.7595 31 1 -3.2122 -11.0550 -1.7380 32 1 -4.0957 -8.7656 1.7608 33 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625844898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = 17.941876 kcal Electronic energy + Delta-G solvation = -21338.670426 eV Core-core repulsion = 17701.177403 eV Total energy + Delta-G solvation = -3637.493023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 8.33 seconds Orbital eigenvalues (eV) -49.98888 -41.72709 -41.17371 -39.81671 -35.85626 -34.90414 -33.73306 -33.43530 -32.19445 -30.05594 -28.59307 -26.65830 -24.94128 -23.78581 -22.79634 -21.73382 -21.11417 -19.29434 -18.65258 -18.35205 -17.79037 -17.36173 -17.26998 -16.77154 -16.53762 -16.19581 -15.68340 -15.21065 -14.99508 -14.92276 -14.77804 -14.71314 -13.96122 -13.93594 -13.47028 -13.26663 -13.11831 -12.97692 -12.82304 -12.81679 -12.01898 -11.77295 -10.98232 -10.89391 -10.79531 -10.64219 -10.44016 -10.07186 -9.81379 -8.46296 -8.44950 -6.21662 -0.10896 0.18523 1.25981 1.40617 1.59753 1.60464 1.92625 2.08083 2.31845 2.58703 2.71089 2.99860 3.02070 3.11326 3.32110 3.66351 3.80989 3.93326 4.10593 4.38257 4.48802 4.55486 4.65652 4.68315 4.81970 4.90974 5.00292 5.03202 5.14749 5.33251 5.56663 5.65150 5.99333 6.36845 6.77423 6.87354 6.94857 7.48903 7.56580 7.73703 8.54803 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.041487 B = 0.002870 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.747646 B = 9752.661862 C =10237.402877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.239 1.239 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.171 5.171 10 C -0.081 4.081 11 C -0.039 4.039 12 N -0.619 5.619 13 C 0.497 3.503 14 O -0.570 6.570 15 C -0.074 4.074 16 C 0.114 3.886 17 C -0.125 4.125 18 C -0.106 4.106 19 C 0.030 3.970 20 F -0.137 7.137 21 C 0.059 3.941 22 N -0.468 5.468 23 C -0.063 4.063 24 N -0.313 5.313 25 H 0.275 0.725 26 H 0.190 0.810 27 H 0.422 0.578 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.189 0.811 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 -20.734 -2.540 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.162 1.162 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.059 4.941 10 C -0.231 4.231 11 C -0.145 4.145 12 N -0.265 5.265 13 C 0.285 3.715 14 O -0.448 6.448 15 C -0.114 4.114 16 C -0.025 4.025 17 C -0.144 4.144 18 C -0.132 4.132 19 C 0.009 3.991 20 F -0.116 7.116 21 C -0.099 4.099 22 N -0.177 5.177 23 C -0.239 4.239 24 N -0.146 5.146 25 H 0.084 0.916 26 H 0.207 0.793 27 H 0.260 0.740 28 H 0.177 0.823 29 H 0.156 0.844 30 H 0.206 0.794 31 H 0.196 0.804 32 H 0.184 0.816 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.511 -18.509 -1.895 18.774 hybrid contribution -0.222 -0.674 -0.334 0.784 sum 2.289 -19.182 -2.229 19.447 Atomic orbital electron populations 1.70422 1.08501 1.28892 1.37787 1.26900 0.96460 1.04425 0.94236 0.84529 0.79114 0.74391 0.78096 1.16150 1.19845 1.19942 1.20651 0.92947 0.80891 1.53922 0.84068 1.44848 1.03549 1.04923 1.40758 1.22040 0.98895 0.84133 1.18068 1.17346 0.92434 0.84267 1.20470 1.42455 1.10002 1.01963 1.72070 1.21149 0.83543 0.90351 0.76434 1.90633 1.27839 1.76085 1.50290 1.20677 0.93735 0.87856 1.09107 1.21147 0.95462 0.94316 0.91552 1.22292 0.97264 0.95853 0.99029 1.22006 0.93070 1.00529 0.97636 1.18988 0.81921 0.98638 0.99556 1.91497 1.39248 1.84608 1.96226 1.23025 0.94160 0.93968 0.98787 1.67483 1.02649 1.21720 1.25811 1.24111 0.99056 0.91012 1.09681 1.78139 0.92209 1.16706 1.27504 0.91557 0.79279 0.74010 0.82321 0.84369 0.79390 0.80378 0.81598 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.85 11.81 21.66 0.26 -48.60 16 2 C -0.01 -0.48 5.50 84.95 0.47 -0.02 16 3 Si 1.02 39.10 29.55 68.60 2.03 41.13 16 4 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.35 -18.88 10.25 84.01 0.86 -18.01 16 8 H 0.14 6.50 7.83 -2.91 -0.02 6.48 16 9 N -0.17 -9.63 3.74 -190.01 -0.71 -10.34 16 10 C -0.08 -3.74 11.49 83.37 0.96 -2.78 16 11 C -0.04 -1.78 6.90 37.73 0.26 -1.52 16 12 N -0.62 -19.87 5.47 -303.93 -1.66 -21.53 16 13 C 0.50 16.03 7.73 87.66 0.68 16.71 16 14 O -0.57 -25.14 12.49 -3.11 -0.04 -25.18 16 15 C -0.07 -1.33 6.10 29.10 0.18 -1.15 16 16 C 0.11 2.56 5.76 42.56 0.25 2.81 16 17 C -0.13 -1.90 9.71 22.35 0.22 -1.69 16 18 C -0.11 -1.70 10.16 22.51 0.23 -1.48 16 19 C 0.03 0.66 7.34 22.47 0.17 0.83 16 20 F -0.14 -3.02 17.28 44.97 0.78 -2.24 16 21 C 0.06 1.53 11.17 84.73 0.95 2.48 16 22 N -0.47 -13.81 9.22 -183.71 -1.69 -15.50 16 23 C -0.06 -3.55 10.85 85.42 0.93 -2.62 16 24 N -0.31 -19.38 10.40 -56.46 -0.59 -19.97 16 25 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 27 H 0.42 8.93 8.83 -92.71 -0.82 8.11 16 28 H 0.16 1.25 7.87 -2.39 -0.02 1.23 16 29 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.19 1.14 7.95 -2.91 -0.02 1.11 16 31 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.16 9.27 5.92 -2.91 -0.02 9.25 16 Total: -1.00 -86.01 303.26 4.86 -81.15 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.36 Total: 27.52 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 6.13 Total: -6.43 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.40 Total: -115.94 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -86.01 4.86 -81.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625844898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.092 kcal (2) G-P(sol) polarization free energy of solvation -86.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.33 seconds