Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38400 * 120.33163 * 2 1 4 4 N 1.31949 * 121.14378 * 179.97438 * 3 2 1 5 5 C 1.31651 * 121.91412 * 359.97438 * 4 3 2 6 6 C 1.39838 * 120.51656 * 359.97438 * 5 4 3 7 7 C 1.47144 * 120.59019 * 179.97438 * 6 5 4 8 8 C 1.34978 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.46223 * 120.00578 * 179.97438 * 8 7 6 10 10 O 1.21758 * 119.99756 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00251 * 179.97438 * 9 8 7 12 12 C 1.36711 * 119.99933 * 0.02562 * 11 9 8 13 13 H 1.07999 * 120.00274 * 326.52289 * 12 11 9 14 14 C 1.39130 * 120.00106 * 146.52077 * 12 11 9 15 15 N 1.31325 * 119.99540 * 334.46008 * 14 12 11 16 16 Si 1.86796 * 120.00081 * 154.46084 * 14 12 11 17 17 H 1.48498 * 109.47143 * 85.00081 * 16 14 12 18 18 H 1.48501 * 109.47013 * 204.99626 * 16 14 12 19 19 H 1.48499 * 109.47386 * 324.99727 * 16 14 12 20 20 C 1.46506 * 119.99784 * 179.97438 * 11 9 8 21 21 C 1.50701 * 109.46929 * 87.48184 * 20 11 9 22 22 O 1.20824 * 119.99773 * 359.97438 * 21 20 11 23 23 O 1.34226 * 119.99982 * 179.97438 * 21 20 11 24 24 C 1.38276 * 120.33149 * 180.25433 * 2 1 3 25 25 H 1.09005 * 109.47074 * 89.99986 * 1 2 3 26 26 H 1.09001 * 109.47595 * 209.99953 * 1 2 3 27 27 H 1.08999 * 109.47274 * 330.00129 * 1 2 3 28 28 H 1.08000 * 119.43124 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.74103 * 180.02562 * 5 4 3 30 30 H 1.08007 * 120.00391 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.99339 * 359.97438 * 8 7 6 32 32 H 0.97004 * 119.99619 * 179.97438 * 15 14 12 33 33 H 1.09004 * 109.46657 * 207.47868 * 20 11 9 34 34 H 1.08999 * 109.47188 * 327.48132 * 20 11 9 35 35 H 0.96701 * 117.00283 * 180.02562 * 23 21 20 36 36 H 1.08002 * 120.87034 * 0.02707 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2059 1.1946 0.0000 4 7 3.5252 1.2133 0.0005 5 6 4.2370 0.1057 0.0015 6 6 3.6074 -1.1429 0.0027 7 6 4.4013 -2.3818 0.0032 8 6 5.7496 -2.3194 0.0032 9 6 6.5387 -3.5504 0.0043 10 8 5.9794 -4.6319 0.0049 11 7 7.8850 -3.4880 0.0038 12 6 8.5129 -2.2736 0.0027 13 1 8.0678 -1.4360 -0.5137 14 6 9.7254 -2.1169 0.6668 15 7 10.0295 -2.9041 1.6729 16 14 10.9206 -0.7866 0.1272 17 1 10.5598 0.4975 0.7801 18 1 12.3000 -1.1713 0.5205 19 1 10.8524 -0.6284 -1.3477 20 6 8.6754 -4.7215 0.0055 21 6 8.8934 -5.1804 -1.4133 22 8 8.4351 -4.5428 -2.3316 23 8 9.5967 -6.2974 -1.6569 24 6 2.2052 -1.1935 -0.0053 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6620 2.1276 -0.0004 29 1 5.3154 0.1620 0.0023 30 1 3.9052 -3.3412 0.0045 31 1 6.2457 -1.3600 0.0023 32 1 10.8750 -2.7951 2.1357 33 1 9.6393 -4.5346 0.4791 34 1 8.1421 -5.4941 0.5594 35 1 9.7103 -6.5515 -2.5829 36 1 1.6850 -2.1399 -0.0099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832986708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = -90.479169 kcal Electronic energy + Delta-G solvation = -22155.595204 eV Core-core repulsion = 18604.568245 eV Total energy + Delta-G solvation = -3551.026959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47923 -41.14308 -40.13060 -37.23088 -36.71168 -35.50043 -34.54801 -33.66085 -31.53237 -29.70410 -28.13240 -26.95869 -25.24367 -24.03899 -22.97965 -21.52488 -20.56543 -19.14219 -18.92156 -18.45204 -17.86142 -17.34447 -17.13546 -16.63510 -16.55994 -16.06629 -15.47914 -15.35977 -15.17079 -14.67974 -14.48996 -14.02535 -14.00111 -13.60709 -13.55624 -13.36076 -13.25694 -13.09511 -12.73325 -12.56310 -12.48497 -12.37075 -12.12452 -11.76607 -11.66389 -11.24646 -10.65825 -10.41899 -10.24765 -9.75937 -9.30587 -8.47874 -6.12224 -0.50941 0.25801 0.98541 1.26188 1.41163 1.47605 1.58436 1.97040 2.25847 2.46981 2.85376 2.88654 3.15801 3.46233 3.74177 3.82782 3.95032 4.02812 4.21231 4.25339 4.38350 4.47828 4.61249 4.74246 4.78495 4.82611 4.88611 5.03337 5.22494 5.28689 5.37050 5.47812 5.49623 5.59048 5.71438 5.77223 6.25823 6.97147 6.97732 7.04412 7.35617 7.80127 8.56588 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.004363 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.461285 B = 6415.866506 C = 7591.116199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.133 4.133 3 C 0.089 3.911 4 N -0.504 5.504 5 C 0.088 3.912 6 C -0.113 4.113 7 C -0.050 4.050 8 C -0.166 4.166 9 C 0.486 3.514 10 O -0.634 6.634 11 N -0.421 5.421 12 C -0.361 4.361 13 H 0.098 0.902 14 C 0.012 3.988 15 N -0.875 5.875 16 Si 0.976 3.024 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.114 3.886 21 C 0.470 3.530 22 O -0.544 6.544 23 O -0.509 6.509 24 C -0.068 4.068 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.184 0.816 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.282 0.718 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.422 0.578 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 4.169 -2.122 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.068 4.068 4 N -0.211 5.211 5 C -0.069 4.069 6 C -0.115 4.115 7 C -0.071 4.071 8 C -0.187 4.187 9 C 0.280 3.720 10 O -0.525 6.525 11 N -0.137 5.137 12 C -0.488 4.488 13 H 0.116 0.884 14 C -0.193 4.193 15 N -0.511 5.511 16 Si 0.799 3.201 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.012 4.012 21 C 0.313 3.687 22 O -0.434 6.434 23 O -0.322 6.322 24 C -0.093 4.093 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.201 0.799 29 H 0.172 0.828 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.118 0.882 35 H 0.283 0.717 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.563 4.694 -1.812 11.700 hybrid contribution 0.796 -0.709 -0.787 1.325 sum -9.767 3.985 -2.599 10.864 Atomic orbital electron populations 1.20800 0.87130 1.04523 1.03772 1.21236 0.99543 0.92934 0.99746 1.23358 0.89367 0.99187 0.94919 1.67642 1.09424 1.31354 1.12708 1.23167 1.00714 0.87330 0.95664 1.20022 0.94912 0.93589 1.03021 1.22107 0.92928 0.96747 0.95344 1.22995 0.94590 0.97975 1.03098 1.18825 0.82980 0.89738 0.80447 1.90606 1.71961 1.31525 1.58384 1.43080 1.03593 1.05486 1.61499 1.19673 1.06479 0.88851 1.33795 0.88402 1.26125 0.99859 1.00506 0.92804 1.69934 1.24375 1.40674 1.16074 0.85217 0.77478 0.78560 0.78894 1.18805 1.19696 1.19727 1.20953 1.02023 0.88888 0.89324 1.24534 0.73254 0.77354 0.93606 1.90619 1.48925 1.56237 1.47643 1.84509 1.68267 1.41752 1.37635 1.22009 0.91903 1.00145 0.95259 0.89634 0.90321 0.89380 0.79882 0.82838 0.85310 0.84552 0.90832 0.84122 0.88195 0.71682 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.03 71.23 0.71 -0.47 16 2 C -0.13 -2.63 5.89 -19.82 -0.12 -2.75 16 3 C 0.09 1.98 10.85 84.71 0.92 2.90 16 4 N -0.50 -14.93 10.34 -194.48 -2.01 -16.94 16 5 C 0.09 2.80 10.59 85.11 0.90 3.70 16 6 C -0.11 -3.49 5.88 -20.05 -0.12 -3.61 16 7 C -0.05 -1.82 9.48 23.86 0.23 -1.60 16 8 C -0.17 -7.15 8.68 23.60 0.20 -6.94 16 9 C 0.49 24.88 7.50 86.32 0.65 25.52 16 10 O -0.63 -34.58 15.85 -4.53 -0.07 -34.65 16 11 N -0.42 -21.69 2.04 -644.63 -1.32 -23.01 16 12 C -0.36 -18.32 8.55 84.15 0.72 -17.60 16 13 H 0.10 4.81 6.61 -2.91 -0.02 4.80 16 14 C 0.01 0.59 4.86 84.98 0.41 1.01 16 15 N -0.87 -43.50 11.47 21.69 0.25 -43.26 16 16 Si 0.98 38.53 29.62 68.60 2.03 40.56 16 17 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 C 0.11 5.44 5.56 85.63 0.48 5.92 16 21 C 0.47 20.86 8.38 71.24 0.60 21.46 16 22 O -0.54 -27.37 17.15 21.97 0.38 -26.99 16 23 O -0.51 -17.09 13.42 -51.38 -0.69 -17.78 16 24 C -0.07 -1.62 9.62 22.78 0.22 -1.40 16 25 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.08 0.77 8.09 -2.39 -0.02 0.76 16 27 H 0.09 0.70 8.09 -2.39 -0.02 0.69 16 28 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.15 4.98 6.19 -2.91 -0.02 4.96 16 30 H 0.13 4.70 7.52 -2.91 -0.02 4.68 16 31 H 0.14 5.60 4.47 -2.91 -0.01 5.58 16 32 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 33 H 0.14 6.82 5.40 -2.38 -0.01 6.81 16 34 H 0.10 4.73 7.50 -2.39 -0.02 4.71 16 35 H 0.42 9.58 9.10 -74.06 -0.67 8.90 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -69.40 322.66 4.84 -64.56 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.47 Total: 31.36 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 5.80 Total: 26.14 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -3.08 Total: -83.21 kcal Atomic # 8 Polarization: -79.03 SS G_CDS: -0.38 Total: -79.42 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -69.40 4.84 -64.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832986708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.923 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds