Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38549 * 119.16569 * 2 1 4 4 C 1.39569 * 119.19053 * 180.27916 * 3 2 1 5 5 C 1.47770 * 121.11422 * 179.73197 * 4 3 2 6 6 O 1.21498 * 120.00027 * 173.23600 * 5 4 3 7 7 O 1.34705 * 119.99962 * 353.23242 * 5 4 3 8 8 C 1.34794 * 116.99723 * 180.02562 * 7 5 4 9 9 H 1.07995 * 120.00091 * 359.97438 * 8 7 5 10 10 C 1.38891 * 119.99479 * 179.72645 * 8 7 5 11 11 N 1.31361 * 120.00008 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00231 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46774 * 90.00480 * 12 10 8 14 14 H 1.48502 * 109.47159 * 210.00136 * 12 10 8 15 15 H 1.48494 * 109.47153 * 330.00342 * 12 10 8 16 16 C 1.40959 * 117.76829 * 359.45264 * 4 3 2 17 17 C 1.40512 * 119.26924 * 0.28163 * 16 4 3 18 18 N 1.31587 * 119.16864 * 179.72336 * 2 1 3 19 19 O 1.34833 * 106.86241 * 180.02562 * 17 16 4 20 20 N 1.41328 * 109.41662 * 359.97438 * 19 17 16 21 21 C 1.29828 * 109.71547 * 0.02562 * 20 19 17 22 22 C 1.50708 * 126.33216 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.46909 * 260.50570 * 22 21 20 24 24 C 1.52997 * 109.46936 * 20.50338 * 22 21 20 25 25 H 1.09004 * 109.46874 * 270.27581 * 1 2 3 26 26 H 1.08993 * 109.47341 * 30.28231 * 1 2 3 27 27 H 1.09002 * 109.46937 * 150.27868 * 1 2 3 28 28 H 1.07994 * 120.40102 * 0.03076 * 3 2 1 29 29 H 0.97005 * 120.00692 * 179.97438 * 11 10 8 30 30 H 1.08993 * 109.47131 * 140.50250 * 22 21 20 31 31 H 1.09000 * 109.46726 * 179.97438 * 23 22 21 32 32 H 1.09004 * 109.47568 * 299.99565 * 23 22 21 33 33 H 1.09001 * 109.47497 * 60.00267 * 23 22 21 34 34 H 1.09004 * 109.47444 * 59.99990 * 24 22 21 35 35 H 1.09000 * 109.47091 * 179.97438 * 24 22 21 36 36 H 1.09007 * 109.47282 * 300.00138 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.2098 0.0000 4 6 3.5778 1.2104 -0.0059 5 6 4.3408 2.4759 -0.0121 6 8 5.5499 2.4569 0.1067 7 8 3.6960 3.6505 -0.1495 8 6 4.4512 4.7671 -0.1475 9 1 5.5231 4.6937 -0.0385 10 6 3.8511 6.0114 -0.2909 11 7 4.5870 7.0996 -0.2894 12 14 1.9977 6.1377 -0.4871 13 1 1.3658 6.2634 0.8508 14 1 1.6668 7.3321 -1.3050 15 1 1.4873 4.9180 -1.1630 16 6 4.2351 -0.0365 0.0002 17 6 3.4712 -1.2158 0.0059 18 7 2.1483 -1.1490 0.0055 19 8 4.3415 -2.2456 0.0116 20 7 5.6628 -1.7441 0.0091 21 6 5.6386 -0.4460 0.0026 22 6 6.8358 0.4694 -0.0026 23 6 7.0970 0.9752 1.4175 24 6 8.0613 -0.2967 -0.5046 25 1 -0.3633 0.0049 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6351 2.1410 0.0005 29 1 4.1681 7.9687 -0.3899 30 1 6.6424 1.3167 -0.6603 31 1 7.9632 1.6369 1.4138 32 1 6.2239 1.5211 1.7752 33 1 7.2904 0.1279 2.0753 34 1 7.8752 -0.6572 -1.5163 35 1 8.9271 0.3654 -0.5087 36 1 8.2547 -1.1442 0.1532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920896607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = 7.291556 kcal Electronic energy + Delta-G solvation = -23330.726953 eV Core-core repulsion = 19783.939651 eV Total energy + Delta-G solvation = -3546.787302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95554 -39.57836 -38.75577 -36.51177 -35.24625 -33.15190 -32.62348 -32.00025 -31.39962 -27.82199 -26.80291 -26.23537 -24.18986 -23.33327 -22.79111 -20.78313 -19.08302 -18.46289 -17.68875 -17.22754 -17.17829 -16.32418 -15.74551 -15.07952 -14.69017 -14.32148 -14.20738 -14.01213 -13.85696 -13.66797 -12.98384 -12.88662 -12.66898 -12.51477 -12.20288 -12.14479 -11.89185 -11.85515 -11.50056 -11.38981 -11.12457 -10.96485 -10.67607 -10.61985 -10.23214 -10.01492 -9.80051 -9.32020 -9.08623 -8.95756 -8.82375 -6.71294 -4.38167 0.24475 0.94729 2.02312 2.21037 2.91796 3.04660 3.11049 3.16083 3.53122 3.79857 3.87163 3.97786 4.20798 4.45716 4.61267 4.83675 4.95496 5.07282 5.20536 5.35665 5.45487 5.46784 5.49842 5.56756 5.80507 5.89156 5.89833 5.97937 6.04884 6.16401 6.19588 6.32305 6.37884 6.60222 6.74029 7.21650 7.43881 7.66323 7.69947 8.34639 8.65281 9.32993 10.34642 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.006725 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.922314 B = 4162.780870 C = 5934.539210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.194 3.806 3 C -0.173 4.173 4 C 0.047 3.953 5 C 0.419 3.581 6 O -0.512 6.512 7 O -0.227 6.227 8 C -0.365 4.365 9 H 0.118 0.882 10 C 0.068 3.932 11 N -0.849 5.849 12 Si 0.904 3.096 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.256 1.256 16 C -0.216 4.216 17 C 0.292 3.708 18 N -0.481 5.481 19 O -0.092 6.092 20 N -0.288 5.288 21 C 0.175 3.825 22 C -0.031 4.031 23 C -0.121 4.121 24 C -0.149 4.149 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.286 0.714 30 H 0.142 0.858 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -9.512 0.453 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.052 3.948 3 C -0.193 4.193 4 C 0.036 3.964 5 C 0.269 3.731 6 O -0.410 6.410 7 O -0.134 6.134 8 C -0.440 4.440 9 H 0.135 0.865 10 C -0.140 4.140 11 N -0.486 5.486 12 Si 0.728 3.272 13 H -0.194 1.194 14 H -0.203 1.203 15 H -0.180 1.180 16 C -0.223 4.223 17 C 0.109 3.891 18 N -0.204 5.204 19 O -0.094 6.094 20 N -0.036 5.036 21 C -0.005 4.005 22 C -0.050 4.050 23 C -0.179 4.179 24 C -0.207 4.207 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.177 0.823 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.005 -11.265 0.467 11.964 hybrid contribution -0.694 1.579 -0.088 1.727 sum -4.699 -9.686 0.379 10.772 Atomic orbital electron populations 1.20835 0.87097 1.04326 1.03943 1.21311 0.97071 0.86133 0.90321 1.22283 0.93143 1.00274 1.03626 1.19265 0.92932 0.90477 0.93766 1.20141 0.86431 0.83645 0.82918 1.90620 1.14002 1.86615 1.49784 1.83479 1.41519 1.14351 1.74090 1.20843 0.93704 0.80164 1.49304 0.86468 1.24658 1.00651 0.93495 0.95178 1.69549 1.37049 0.98342 1.43699 0.86224 0.82832 0.78855 0.79276 1.19372 1.20304 1.18002 1.21186 0.92920 0.94527 1.13626 1.20244 0.89132 0.86419 0.93314 1.66302 1.05033 1.30290 1.18744 1.89205 1.12223 1.26531 1.81437 1.80048 0.90085 1.10705 1.22760 1.24711 0.94895 0.91989 0.88899 1.20484 0.87113 0.95646 1.01760 1.21666 1.03256 0.99840 0.93135 1.21918 0.97451 1.00268 1.01063 0.89400 0.89538 0.89796 0.82258 0.90342 0.84074 0.91475 0.90885 0.94275 0.92777 0.91504 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.14 36.00 0.37 -0.62 16 2 C 0.19 2.73 6.78 -82.58 -0.56 2.17 16 3 C -0.17 -2.69 9.31 -38.97 -0.36 -3.06 16 4 C 0.05 0.86 5.93 -104.47 -0.62 0.24 16 5 C 0.42 8.99 7.84 34.63 0.27 9.26 16 6 O -0.51 -11.29 8.30 -19.27 -0.16 -11.45 16 7 O -0.23 -5.32 7.95 -21.40 -0.17 -5.49 16 8 C -0.37 -9.59 10.11 30.97 0.31 -9.28 16 9 H 0.12 3.36 7.09 -52.49 -0.37 2.99 16 10 C 0.07 1.73 5.50 -17.51 -0.10 1.63 16 11 N -0.85 -22.65 13.95 55.49 0.77 -21.88 16 12 Si 0.90 18.96 28.62 -169.99 -4.86 14.10 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 16 C -0.22 -3.99 6.16 -104.82 -0.65 -4.63 16 17 C 0.29 5.27 8.64 -16.43 -0.14 5.13 16 18 N -0.48 -7.92 10.25 -9.25 -0.09 -8.02 16 19 O -0.09 -1.70 12.06 7.66 0.09 -1.61 16 20 N -0.29 -5.15 12.20 34.84 0.43 -4.73 16 21 C 0.18 3.12 6.29 -80.24 -0.50 2.61 16 22 C -0.03 -0.51 2.36 -91.77 -0.22 -0.73 16 23 C -0.12 -1.94 8.21 37.16 0.30 -1.64 16 24 C -0.15 -2.05 8.82 37.16 0.33 -1.73 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.66 8.07 -51.93 -0.42 0.25 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.16 2.27 7.73 -52.49 -0.41 1.86 16 29 H 0.29 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.14 2.61 5.41 -52.57 -0.28 2.33 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.34 6.38 -51.93 -0.33 1.01 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -28.00 310.64 -4.78 -32.79 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.90 Total: 2.24 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.56 Total: -0.64 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 1.10 Total: -34.62 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.24 Total: -18.55 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.86 Total: 14.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.00 -4.78 -32.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920896607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.080 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds