Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48493 * 109.47719 * 275.00359 * 3 2 1 5 5 H 1.48506 * 109.46842 * 35.00421 * 3 2 1 6 6 H 1.48495 * 109.47247 * 154.99744 * 3 2 1 7 7 C 1.40036 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99858 * 174.91847 * 7 2 1 9 9 C 1.41337 * 120.00015 * 354.91493 * 7 2 1 10 10 C 1.40612 * 119.78519 * 185.69540 * 9 7 2 11 11 C 1.38310 * 119.12391 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.66978 * 0.02562 * 11 10 9 13 13 C 1.39637 * 119.49868 * 359.97438 * 12 11 10 14 14 N 1.39269 * 119.57301 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99915 * 185.70863 * 14 13 12 16 16 O 1.21275 * 120.00141 * 354.83342 * 15 14 13 17 17 C 1.50699 * 119.99983 * 174.84241 * 15 14 13 18 18 H 1.08997 * 112.91319 * 48.74718 * 17 15 14 19 19 C 1.53786 * 113.61258 * 277.49312 * 17 15 14 20 20 C 1.53785 * 87.08322 * 220.02075 * 19 17 15 21 21 C 1.53783 * 87.07827 * 25.43384 * 20 19 17 22 22 H 1.09001 * 113.61524 * 89.20237 * 21 20 19 23 23 C 1.50702 * 113.61243 * 220.01786 * 21 20 19 24 24 O 1.20831 * 119.99849 * 100.49568 * 23 21 20 25 25 O 1.34233 * 120.00187 * 280.22072 * 23 21 20 26 26 N 1.31926 * 120.85133 * 0.25395 * 13 12 11 27 27 H 0.97000 * 119.99805 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.43719 * 0.02562 * 10 9 7 29 29 H 1.08001 * 120.66249 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.25296 * 180.02562 * 12 11 10 31 31 H 0.97007 * 120.00051 * 5.71122 * 14 13 12 32 32 H 1.09000 * 113.61059 * 105.47225 * 19 17 15 33 33 H 1.08998 * 113.61503 * 334.56681 * 19 17 15 34 34 H 1.09002 * 113.61476 * 270.88787 * 20 19 17 35 35 H 1.08995 * 113.69139 * 139.98822 * 20 19 17 36 36 H 0.96698 * 116.99887 * 180.27730 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3833 2.1075 -1.3946 5 1 1.4958 2.6198 0.8032 6 1 3.5878 1.4119 0.5917 7 6 2.0076 -1.2128 -0.0005 8 1 3.0844 -1.2146 -0.0834 9 6 1.3051 -2.4344 0.1074 10 6 2.0167 -3.6412 0.2273 11 6 1.3155 -4.8287 0.3315 12 6 -0.0707 -4.7867 0.3134 13 6 -0.7197 -3.5564 0.1919 14 7 -2.1116 -3.5124 0.1731 15 6 -2.7459 -2.3461 -0.0589 16 8 -2.1091 -1.3188 -0.1580 17 6 -4.2465 -2.3185 -0.1949 18 1 -4.7552 -2.8529 0.6074 19 6 -4.7447 -2.6969 -1.5998 20 6 -5.7890 -1.5786 -1.4449 21 6 -4.8155 -0.9141 -0.4571 22 1 -4.1066 -0.2360 -0.9322 23 6 -5.4948 -0.3044 0.7420 24 8 -5.5035 -0.8946 1.7963 25 8 -6.0854 0.8967 0.6403 26 7 -0.0314 -2.4356 0.0893 27 1 -0.4850 0.8401 0.0004 28 1 3.0967 -3.6408 0.2379 29 1 1.8369 -5.7699 0.4251 30 1 -0.6438 -5.6986 0.3935 31 1 -2.6246 -4.3213 0.3269 32 1 -5.1788 -3.6952 -1.6548 33 1 -4.0155 -2.5072 -2.3874 34 1 -6.7194 -1.9108 -0.9842 35 1 -5.9499 -1.0006 -2.3548 36 1 -6.5046 1.2487 1.4375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = -49.555615 kcal Electronic energy + Delta-G solvation = -23056.777538 eV Core-core repulsion = 19507.525158 eV Total energy + Delta-G solvation = -3549.252380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83702 -39.32798 -38.11814 -36.65648 -35.95961 -34.07683 -32.98519 -30.31124 -29.27067 -27.40814 -26.64203 -25.38577 -22.27658 -22.08088 -21.24116 -19.90787 -19.00330 -18.18923 -17.69398 -17.12473 -16.34623 -15.99895 -15.43961 -14.68552 -14.44664 -14.28038 -14.11735 -13.98813 -13.57872 -12.88339 -12.73952 -12.53044 -12.30812 -12.01490 -11.82646 -11.51556 -11.44898 -11.16958 -10.97267 -10.90531 -10.65393 -10.60511 -10.46659 -10.30283 -9.93552 -9.63983 -9.00823 -8.90720 -7.95578 -7.20012 -6.94847 -6.14232 -4.38889 2.24768 2.77152 3.05156 3.07229 3.17672 3.20145 3.27601 3.67803 3.88124 4.06896 4.30473 4.45300 4.68930 4.84882 4.94412 5.39745 5.42267 5.55174 5.65846 5.71688 5.78509 5.88729 6.04924 6.13078 6.29398 6.50519 6.51263 6.70335 6.84986 6.86328 7.24688 7.56515 7.63851 7.82335 7.93411 8.08195 8.21112 8.48315 8.75452 9.05757 9.26903 10.25579 10.48565 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.005986 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.989223 B = 4676.308936 C = 6157.379585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.658 5.658 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.304 4.304 11 C -0.037 4.037 12 C -0.356 4.356 13 C 0.371 3.629 14 N -0.663 5.663 15 C 0.482 3.518 16 O -0.409 6.409 17 C -0.117 4.117 18 H 0.117 0.883 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.087 4.087 22 H 0.142 0.858 23 C 0.492 3.508 24 O -0.515 6.515 25 O -0.516 6.516 26 N -0.474 5.474 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 -1.477 -2.512 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.276 5.276 2 C -0.170 4.170 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.328 4.328 11 C -0.061 4.061 12 C -0.382 4.382 13 C 0.133 3.867 14 N -0.309 5.309 15 C 0.264 3.736 16 O -0.273 6.273 17 C -0.139 4.139 18 H 0.135 0.865 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.106 4.106 22 H 0.159 0.841 23 C 0.335 3.665 24 O -0.403 6.403 25 O -0.327 6.327 26 N -0.193 5.193 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -12.839 -0.002 -2.765 13.133 hybrid contribution 0.295 -0.370 0.927 1.040 sum -12.544 -0.372 -1.838 12.683 Atomic orbital electron populations 1.70332 1.05815 1.27265 1.24212 1.26172 0.95105 1.00586 0.95160 0.86509 0.80709 0.81972 0.78830 1.19722 1.20310 1.18682 1.19572 0.94307 0.89457 1.42338 0.89966 1.18397 0.87170 0.91940 0.87901 1.21631 0.98566 0.93795 1.18762 1.20564 0.93210 0.96500 0.95840 1.20506 0.94786 0.95263 1.27600 1.18639 0.83353 0.90948 0.93810 1.43370 1.05032 1.11105 1.71442 1.20368 0.88441 0.84998 0.79841 1.91137 1.65197 1.30158 1.40791 1.22804 0.95110 0.95950 0.99989 0.86456 1.22797 0.98183 0.99218 0.95730 1.22831 0.96916 0.97253 0.98803 1.22438 0.98806 0.96476 0.92899 0.84059 1.23380 0.74836 0.78265 0.90054 1.90706 1.56757 1.62270 1.30552 1.84560 1.67756 1.35459 1.44924 1.68703 1.07150 1.23046 1.20360 0.91741 0.88579 0.88639 0.89074 0.76734 0.89988 0.88807 0.89582 0.89663 0.73615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.28 9.08 55.55 0.50 -17.78 16 2 C 0.06 1.56 5.49 -17.34 -0.10 1.46 16 3 Si 0.90 19.41 29.56 -169.99 -5.03 14.38 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.43 -11.82 9.13 -37.73 -0.34 -12.16 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.69 6.54 -85.00 -0.56 7.13 16 10 C -0.30 -7.74 9.83 -38.66 -0.38 -8.12 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.07 9.95 -38.89 -0.39 -8.45 16 13 C 0.37 9.13 7.43 -154.97 -1.15 7.98 16 14 N -0.66 -13.17 5.38 -11.40 -0.06 -13.23 16 15 C 0.48 9.65 7.31 -10.99 -0.08 9.57 16 16 O -0.41 -10.12 11.74 5.56 0.07 -10.06 16 17 C -0.12 -1.67 3.46 -90.96 -0.31 -1.99 16 18 H 0.12 1.59 7.47 -51.93 -0.39 1.20 16 19 C -0.12 -1.32 7.63 -25.91 -0.20 -1.52 16 20 C -0.12 -1.18 7.63 -25.92 -0.20 -1.38 16 21 C -0.09 -1.19 3.58 -90.96 -0.33 -1.51 16 22 H 0.14 2.16 7.44 -51.93 -0.39 1.77 16 23 C 0.49 7.05 7.85 36.01 0.28 7.33 16 24 O -0.52 -8.87 16.68 -18.75 -0.31 -9.18 16 25 O -0.52 -5.87 13.42 -39.27 -0.53 -6.39 16 26 N -0.47 -13.39 5.74 -10.26 -0.06 -13.45 16 27 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.40 6.16 8.70 -40.82 -0.36 5.81 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.41 2.84 9.10 45.56 0.41 3.26 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -35.29 314.43 -8.04 -43.33 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.22 Total: 10.56 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.15 Total: -2.91 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.38 Total: -44.46 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.77 Total: -25.64 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.29 -8.04 -43.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.222 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds