Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48493 * 109.47719 * 275.00359 * 3 2 1 5 5 H 1.48506 * 109.46842 * 35.00421 * 3 2 1 6 6 H 1.48495 * 109.47247 * 154.99744 * 3 2 1 7 7 C 1.40036 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99858 * 174.91847 * 7 2 1 9 9 C 1.41337 * 120.00015 * 354.91493 * 7 2 1 10 10 C 1.40612 * 119.78519 * 185.69540 * 9 7 2 11 11 C 1.38310 * 119.12391 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.66978 * 0.02562 * 11 10 9 13 13 C 1.39637 * 119.49868 * 359.97438 * 12 11 10 14 14 N 1.39269 * 119.57301 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99915 * 185.70863 * 14 13 12 16 16 O 1.21275 * 120.00141 * 354.83342 * 15 14 13 17 17 C 1.50699 * 119.99983 * 174.84241 * 15 14 13 18 18 H 1.08997 * 112.91319 * 48.74718 * 17 15 14 19 19 C 1.53786 * 113.61258 * 277.49312 * 17 15 14 20 20 C 1.53785 * 87.08322 * 220.02075 * 19 17 15 21 21 C 1.53783 * 87.07827 * 25.43384 * 20 19 17 22 22 H 1.09001 * 113.61524 * 89.20237 * 21 20 19 23 23 C 1.50702 * 113.61243 * 220.01786 * 21 20 19 24 24 O 1.20831 * 119.99849 * 100.49568 * 23 21 20 25 25 O 1.34233 * 120.00187 * 280.22072 * 23 21 20 26 26 N 1.31926 * 120.85133 * 0.25395 * 13 12 11 27 27 H 0.97000 * 119.99805 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.43719 * 0.02562 * 10 9 7 29 29 H 1.08001 * 120.66249 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.25296 * 180.02562 * 12 11 10 31 31 H 0.97007 * 120.00051 * 5.71122 * 14 13 12 32 32 H 1.09000 * 113.61059 * 105.47225 * 19 17 15 33 33 H 1.08998 * 113.61503 * 334.56681 * 19 17 15 34 34 H 1.09002 * 113.61476 * 270.88787 * 20 19 17 35 35 H 1.08995 * 113.69139 * 139.98822 * 20 19 17 36 36 H 0.96698 * 116.99887 * 180.27730 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3833 2.1075 -1.3946 5 1 1.4958 2.6198 0.8032 6 1 3.5878 1.4119 0.5917 7 6 2.0076 -1.2128 -0.0005 8 1 3.0844 -1.2146 -0.0834 9 6 1.3051 -2.4344 0.1074 10 6 2.0167 -3.6412 0.2273 11 6 1.3155 -4.8287 0.3315 12 6 -0.0707 -4.7867 0.3134 13 6 -0.7197 -3.5564 0.1919 14 7 -2.1116 -3.5124 0.1731 15 6 -2.7459 -2.3461 -0.0589 16 8 -2.1091 -1.3188 -0.1580 17 6 -4.2465 -2.3185 -0.1949 18 1 -4.7552 -2.8529 0.6074 19 6 -4.7447 -2.6969 -1.5998 20 6 -5.7890 -1.5786 -1.4449 21 6 -4.8155 -0.9141 -0.4571 22 1 -4.1066 -0.2360 -0.9322 23 6 -5.4948 -0.3044 0.7420 24 8 -5.5035 -0.8946 1.7963 25 8 -6.0854 0.8967 0.6403 26 7 -0.0314 -2.4356 0.0893 27 1 -0.4850 0.8401 0.0004 28 1 3.0967 -3.6408 0.2379 29 1 1.8369 -5.7699 0.4251 30 1 -0.6438 -5.6986 0.3935 31 1 -2.6246 -4.3213 0.3269 32 1 -5.1788 -3.6952 -1.6548 33 1 -4.0155 -2.5072 -2.3874 34 1 -6.7194 -1.9108 -0.9842 35 1 -5.9499 -1.0006 -2.3548 36 1 -6.5046 1.2487 1.4375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = -73.800624 kcal Electronic energy + Delta-G solvation = -23057.828881 eV Core-core repulsion = 19507.525158 eV Total energy + Delta-G solvation = -3550.303723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.99551 -40.81830 -39.66397 -38.07905 -37.04584 -35.89971 -34.83777 -32.23617 -31.10951 -28.51600 -27.95415 -27.16120 -23.88433 -23.18256 -23.07111 -21.37768 -20.27122 -19.63187 -19.13752 -18.32812 -18.00812 -17.46268 -16.60260 -16.47614 -16.27073 -15.76778 -15.61133 -15.38799 -14.99657 -14.67815 -14.10175 -13.79466 -13.75830 -13.57725 -13.08460 -12.88549 -12.73932 -12.59814 -12.57297 -12.52930 -12.32276 -12.08075 -11.78952 -11.51737 -11.47449 -11.37138 -10.86428 -10.54201 -9.90062 -9.08393 -8.81502 -8.06983 -6.42514 0.90814 1.14347 1.24632 1.38098 1.49143 1.53218 2.03977 2.11820 2.25113 2.43286 2.97811 3.24447 3.48102 3.71230 3.81325 4.05605 4.13689 4.39556 4.47085 4.61825 4.68381 4.75798 4.83625 4.88791 4.95687 4.99484 5.02967 5.07585 5.28460 5.36161 5.56507 5.68313 5.86314 5.92564 6.15109 6.37200 6.74628 6.84518 6.96403 7.07851 7.69230 8.34545 8.55544 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.005986 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.989223 B = 4676.308936 C = 6157.379585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.012 3.988 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.329 4.329 11 C -0.035 4.035 12 C -0.345 4.345 13 C 0.347 3.653 14 N -0.653 5.653 15 C 0.472 3.528 16 O -0.462 6.462 17 C -0.113 4.113 18 H 0.131 0.869 19 C -0.109 4.109 20 C -0.098 4.098 21 C -0.100 4.100 22 H 0.119 0.881 23 C 0.496 3.504 24 O -0.550 6.550 25 O -0.509 6.509 26 N -0.508 5.508 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.420 0.580 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.437 -2.601 -2.972 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.213 4.213 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.352 4.352 11 C -0.059 4.059 12 C -0.370 4.370 13 C 0.108 3.892 14 N -0.302 5.302 15 C 0.256 3.744 16 O -0.329 6.329 17 C -0.134 4.134 18 H 0.149 0.851 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.120 4.120 22 H 0.137 0.863 23 C 0.340 3.660 24 O -0.441 6.441 25 O -0.322 6.322 26 N -0.228 5.228 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.258 0.742 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -14.491 -1.164 -3.226 14.891 hybrid contribution 0.726 -0.158 1.096 1.325 sum -13.764 -1.321 -2.130 13.991 Atomic orbital electron populations 1.70532 1.07323 1.27834 1.25468 1.27030 0.95998 1.03987 0.94314 0.85327 0.79247 0.76889 0.79058 1.18883 1.19979 1.17922 1.19887 0.94682 0.90565 1.44668 0.89671 1.18895 0.87989 0.93369 0.88675 1.21815 0.99206 0.94132 1.20035 1.21042 0.93607 0.97271 0.93999 1.20998 0.95180 0.96047 1.24792 1.19198 0.85317 0.91102 0.93539 1.43406 1.03516 1.12424 1.70842 1.21423 0.90763 0.84104 0.78105 1.91129 1.67015 1.31876 1.42875 1.22863 0.90494 0.97294 1.02751 0.85135 1.22792 0.97882 1.01523 0.92472 1.22833 0.96508 0.95862 0.98277 1.22533 0.99785 0.95878 0.93787 0.86345 1.23485 0.74344 0.78577 0.89577 1.90691 1.58370 1.63365 1.31675 1.84514 1.67294 1.34135 1.46223 1.68671 1.07459 1.25213 1.21439 0.92052 0.87787 0.84515 0.84991 0.74230 0.86655 0.90287 0.87307 0.87834 0.71345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.48 9.08 21.84 0.20 -40.28 16 2 C 0.01 0.66 5.49 85.29 0.47 1.13 16 3 Si 0.97 41.38 29.56 68.60 2.03 43.41 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.47 -27.08 9.13 23.47 0.21 -26.87 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.24 13.92 6.54 40.21 0.26 14.18 16 10 C -0.33 -16.93 9.83 22.87 0.22 -16.71 16 11 C -0.04 -1.55 10.15 22.39 0.23 -1.32 16 12 C -0.34 -14.97 9.95 22.72 0.23 -14.74 16 13 C 0.35 17.14 7.43 133.24 0.99 18.13 16 14 N -0.65 -25.69 5.38 -308.39 -1.66 -27.35 16 15 C 0.47 19.16 7.31 87.66 0.64 19.80 16 16 O -0.46 -23.95 11.74 -3.02 -0.04 -23.99 16 17 C -0.11 -3.11 3.46 -11.01 -0.04 -3.15 16 18 H 0.13 3.29 7.47 -2.39 -0.02 3.27 16 19 C -0.11 -2.09 7.63 31.12 0.24 -1.86 16 20 C -0.10 -1.62 7.63 31.12 0.24 -1.38 16 21 C -0.10 -2.67 3.58 -11.01 -0.04 -2.71 16 22 H 0.12 3.76 7.44 -2.39 -0.02 3.74 16 23 C 0.50 13.84 7.85 71.24 0.56 14.40 16 24 O -0.55 -18.71 16.68 21.95 0.37 -18.34 16 25 O -0.51 -10.92 13.42 -51.44 -0.69 -11.61 16 26 N -0.51 -29.74 5.74 -186.36 -1.07 -30.81 16 27 H 0.27 14.80 8.29 -92.71 -0.77 14.03 16 28 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 29 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.42 12.20 8.70 -92.70 -0.81 11.39 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 34 H 0.11 1.39 8.09 -2.39 -0.02 1.37 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 36 H 0.43 5.32 9.10 -74.06 -0.67 4.65 16 Total: -1.00 -81.50 314.43 3.01 -78.48 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.34 Total: 31.59 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 4.21 Total: -1.10 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -2.53 Total: -98.44 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.36 Total: -53.94 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -81.50 3.01 -78.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.683 kcal (2) G-P(sol) polarization free energy of solvation -81.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds