Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99849 * 2 1 4 4 H 1.48498 * 109.46853 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.46997 * 29.99377 * 3 2 1 6 6 H 1.48497 * 109.47207 * 149.99233 * 3 2 1 7 7 C 1.37879 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99759 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47331 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.39823 * 120.00445 * 179.97438 * 12 11 10 14 14 C 1.39395 * 119.85201 * 0.17715 * 13 12 11 15 15 C 1.36506 * 120.59819 * 180.26869 * 14 13 12 16 16 C 1.39778 * 119.98447 * 359.51372 * 15 14 13 17 17 N 1.35884 * 133.48855 * 180.25055 * 16 15 14 18 18 C 1.30054 * 109.65756 * 180.02562 * 17 16 15 19 19 N 1.36180 * 110.08771 * 0.02562 * 18 17 16 20 20 H 0.97000 * 126.35485 * 180.02562 * 19 18 17 21 21 C 1.38064 * 107.29187 * 359.97438 * 19 18 17 22 22 C 1.38478 * 119.85839 * 180.02562 * 13 12 11 23 23 N 1.48021 * 120.18491 * 359.95136 * 22 13 12 24 24 O 1.21800 * 120.00519 * 270.03058 * 23 22 13 25 25 O 1.21804 * 120.00033 * 90.02357 * 23 22 13 26 26 H 0.96993 * 119.99963 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47455 * 59.99349 * 9 7 2 28 28 H 1.09002 * 109.46927 * 299.99447 * 9 7 2 29 29 H 1.08998 * 109.47592 * 59.99063 * 10 9 7 30 30 H 1.09002 * 109.46943 * 299.99594 * 10 9 7 31 31 H 1.09007 * 109.47249 * 59.99409 * 11 10 9 32 32 H 1.09002 * 109.46928 * 299.99789 * 11 10 9 33 33 H 0.97005 * 120.00323 * 359.97438 * 12 11 10 34 34 H 1.08005 * 119.70347 * 0.06485 * 14 13 12 35 35 H 1.08002 * 120.01264 * 179.79985 * 15 14 13 36 36 H 1.07998 * 124.95944 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7002 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9667 -7.4188 0.0015 14 6 0.5955 -7.6701 -0.0007 15 6 0.1239 -8.9511 0.0058 16 6 1.0187 -10.0250 0.0043 17 7 0.8600 -11.3745 0.0050 18 6 2.0252 -11.9521 0.0035 19 7 3.0123 -11.0139 0.0023 20 1 3.9673 -11.1840 0.0007 21 6 2.4015 -9.7757 0.0026 22 6 2.8692 -8.4690 0.0015 23 7 4.3247 -8.1995 -0.0007 24 8 4.9221 -8.0892 -1.0563 25 8 4.9250 -8.0879 1.0533 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8895 28 1 0.6243 -2.5567 0.8904 29 1 2.8723 -3.6042 0.8904 30 1 2.8721 -3.6042 -0.8895 31 1 0.8535 -5.0451 -0.8886 32 1 0.8543 -5.0446 0.8914 33 1 3.3863 -5.9233 -0.0005 34 1 -0.1000 -6.8439 -0.0041 35 1 -0.9403 -9.1350 0.0073 36 1 2.1866 -13.0199 0.0032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = 59.048188 kcal Electronic energy + Delta-G solvation = -21987.531168 eV Core-core repulsion = 18475.280953 eV Total energy + Delta-G solvation = -3512.250215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.79355 -41.89733 -38.89746 -36.55373 -35.83712 -33.91422 -33.38999 -31.65381 -31.01635 -28.76718 -26.82720 -26.04486 -23.83139 -23.17914 -22.00230 -21.78324 -20.63682 -19.59266 -18.85957 -18.34660 -17.89436 -16.99161 -16.46105 -16.05038 -15.74428 -15.38473 -15.09452 -14.83190 -14.52861 -13.93140 -13.27087 -13.19412 -12.73365 -12.30617 -11.94662 -11.93406 -11.72723 -11.37026 -11.30830 -11.22450 -10.97788 -10.89127 -10.64652 -10.52935 -10.14861 -9.78948 -9.61828 -9.24753 -9.06827 -8.45797 -7.77449 -6.10866 -4.14009 0.37653 0.40786 1.01755 1.34845 2.26836 2.27601 3.03965 3.26646 3.29175 3.33303 3.36769 3.83831 4.20721 4.37991 4.53256 4.60335 4.73193 4.81566 5.23839 5.25556 5.26843 5.43159 5.54679 5.73193 5.78768 5.82551 6.12712 6.18954 6.35459 6.40285 6.76386 6.78495 6.83289 7.18874 7.37885 7.49249 7.49588 7.60158 7.86673 8.27646 8.91980 9.51119 11.00394 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.028457 B = 0.003059 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.704634 B = 9150.497613 C = 9990.214691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.723 5.723 13 C 0.306 3.694 14 C -0.183 4.183 15 C 0.024 3.976 16 C 0.000 4.000 17 N -0.470 5.470 18 C 0.249 3.751 19 N -0.601 5.601 20 H 0.425 0.575 21 C 0.129 3.871 22 C -0.137 4.137 23 N 0.024 4.976 24 O -0.146 6.146 25 O -0.146 6.146 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -23.201 0.004 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.345 5.345 13 C 0.192 3.808 14 C -0.207 4.207 15 C 0.004 3.996 16 C -0.120 4.120 17 N -0.188 5.188 18 C -0.038 4.038 19 N -0.213 5.213 20 H 0.264 0.736 21 C 0.014 3.986 22 C -0.229 4.229 23 N 0.552 4.448 24 O -0.368 6.368 25 O -0.368 6.368 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.237 0.763 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.623 -23.375 0.012 23.383 hybrid contribution 2.610 1.288 -0.013 2.911 sum 3.234 -22.087 -0.001 22.322 Atomic orbital electron populations 1.69947 1.06066 1.26850 1.50449 1.25012 0.94878 0.99368 0.95065 0.86563 0.79855 0.83240 0.78198 1.20573 1.21124 1.19820 1.21178 0.93083 0.90840 1.51206 0.92590 1.19016 0.93669 0.90747 0.97647 1.21918 1.00010 0.92776 1.01434 1.21964 0.91945 0.85172 1.01887 1.45502 1.10302 1.02162 1.76570 1.17205 0.91816 0.83313 0.88438 1.20406 0.91904 0.98128 1.10284 1.20142 0.99870 0.88929 0.90697 1.18728 0.89139 0.91622 1.12478 1.70394 1.24241 1.04331 1.19865 1.25324 0.81619 0.96518 1.00364 1.43264 1.10728 1.04542 1.62758 0.73620 1.17724 0.94284 0.84118 1.02492 1.18712 0.78218 0.91677 1.34291 1.43561 1.03515 0.97648 1.00054 1.94562 1.69254 1.52287 1.20738 1.94563 1.69037 1.52269 1.20980 0.92839 0.96190 0.96170 0.92421 0.92420 0.91112 0.91100 0.76346 0.82571 0.83327 0.76227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.11 1.66 4.90 -4.05 -0.02 1.64 16 12 N -0.72 -10.17 5.72 -58.58 -0.34 -10.51 16 13 C 0.31 4.04 6.65 -83.69 -0.56 3.49 16 14 C -0.18 -2.02 9.23 -39.78 -0.37 -2.39 16 15 C 0.02 0.24 10.04 -39.63 -0.40 -0.15 16 16 C 0.00 0.00 7.23 -84.64 -0.61 -0.61 16 17 N -0.47 -5.18 11.27 -11.99 -0.14 -5.31 16 18 C 0.25 1.90 12.97 -89.70 -1.16 0.73 16 19 N -0.60 -5.31 6.24 -11.75 -0.07 -5.38 16 20 H 0.43 2.80 8.96 -40.82 -0.37 2.44 16 21 C 0.13 1.56 7.23 -84.00 -0.61 0.96 16 22 C -0.14 -1.87 6.19 -79.66 -0.49 -2.36 16 23 N 0.02 0.34 3.46 34.10 0.12 0.46 16 24 O -0.15 -2.24 19.26 -29.46 -0.57 -2.81 16 25 O -0.15 -2.24 19.26 -29.46 -0.57 -2.81 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 32 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 33 H 0.40 5.88 7.71 -40.82 -0.31 5.57 16 34 H 0.16 1.48 6.69 -52.48 -0.35 1.13 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.22 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -32.37 322.57 -9.83 -42.19 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.93 Total: 2.12 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -4.91 Total: -13.73 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.31 Total: -46.01 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -1.13 Total: -5.62 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.37 -9.83 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.242 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds