Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 116.99961 * 2 1 4 4 C 1.38737 * 120.05479 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94328 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.05541 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94168 * 180.02562 * 6 5 4 8 8 C 1.50702 * 110.05335 * 172.44050 * 7 6 5 9 9 O 1.21210 * 120.00043 * 121.41646 * 8 7 6 10 10 O 1.34307 * 120.00442 * 301.41639 * 8 7 6 11 11 C 1.34923 * 117.00649 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99349 * 359.97438 * 11 10 8 13 13 C 1.38745 * 119.99981 * 179.97438 * 11 10 8 14 14 N 1.31437 * 120.00499 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99601 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47140 * 90.00134 * 15 13 11 17 17 H 1.48504 * 109.47132 * 209.99916 * 15 13 11 18 18 H 1.48498 * 109.47394 * 329.99861 * 15 13 11 19 19 C 1.54269 * 110.03616 * 51.02682 * 7 6 5 20 20 C 1.54884 * 104.19380 * 217.10429 * 19 7 6 21 21 C 1.54885 * 102.75294 * 37.93998 * 20 19 7 22 22 C 1.53873 * 110.03474 * 293.85636 * 7 6 5 23 23 C 1.38264 * 120.11196 * 0.29306 * 6 5 4 24 24 C 1.38150 * 120.05208 * 359.45283 * 23 6 5 25 25 H 1.09003 * 109.47225 * 299.99525 * 1 2 3 26 26 H 1.08995 * 109.47559 * 59.99521 * 1 2 3 27 27 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.02795 * 0.04251 * 4 3 2 29 29 H 1.08003 * 119.97342 * 179.97438 * 5 4 3 30 30 H 0.97003 * 120.00232 * 180.02562 * 14 13 11 31 31 H 1.08995 * 110.48842 * 98.42215 * 19 7 6 32 32 H 1.09003 * 110.48199 * 335.78330 * 19 7 6 33 33 H 1.09004 * 110.75535 * 279.62395 * 20 19 7 34 34 H 1.09007 * 110.75653 * 156.25435 * 20 19 7 35 35 H 1.09010 * 110.48877 * 80.73354 * 21 20 19 36 36 H 1.09000 * 110.49016 * 203.24486 * 21 20 19 37 37 H 1.09003 * 110.03039 * 0.02562 * 22 7 6 38 38 H 1.09000 * 110.07555 * 238.59896 * 22 7 6 39 39 H 1.08000 * 119.97696 * 179.70849 * 23 6 5 40 40 H 1.08002 * 120.02401 * 180.29463 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3018 3.6758 0.0005 7 6 3.9860 5.0185 0.0005 8 6 2.9702 6.1161 -0.1851 9 8 2.8561 6.9844 0.6530 10 8 2.1912 6.1323 -1.2791 11 6 1.3032 7.1427 -1.3839 12 1 1.2426 7.8910 -0.6076 13 6 0.4678 7.2201 -2.4890 14 7 0.5419 6.3096 -3.4340 15 14 -0.7622 8.6186 -2.6337 16 1 -0.1312 9.7616 -3.3413 17 1 -1.9486 8.1572 -3.3984 18 1 -1.1846 9.0488 -1.2766 19 6 5.0377 5.0758 -1.1266 20 6 6.2053 5.8896 -0.5156 21 6 6.2343 5.3965 0.9524 22 6 4.7468 5.2225 1.3224 23 6 1.9210 3.6048 0.0067 24 6 1.2915 2.3751 0.0008 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0208 0.3800 -0.0016 29 1 5.1345 2.5750 0.0000 30 1 -0.0419 6.3641 -4.2068 31 1 4.6330 5.5864 -2.0004 32 1 5.3695 4.0715 -1.3902 33 1 5.9961 6.9584 -0.5601 34 1 7.1435 5.6572 -1.0197 35 1 6.7594 4.4440 1.0247 36 1 6.7050 6.1402 1.5954 37 1 4.6215 4.3500 1.9637 38 1 4.3815 6.1149 1.8305 39 1 1.3341 4.5114 0.0118 40 1 0.2129 2.3202 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057574786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = -100.858310 kcal Electronic energy + Delta-G solvation = -23749.730105 eV Core-core repulsion = 20301.793416 eV Total energy + Delta-G solvation = -3447.936689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43488 -39.35315 -37.70805 -36.40814 -34.92200 -32.17425 -31.19037 -30.61750 -28.40059 -28.03643 -26.51378 -25.34145 -22.89619 -21.83589 -21.13778 -20.38257 -18.63996 -17.99060 -17.67301 -16.69152 -16.02954 -15.58531 -15.52346 -15.09528 -14.67310 -14.37656 -14.17672 -13.80603 -13.41270 -13.19033 -12.88778 -12.66497 -12.53597 -12.22029 -11.86055 -11.69816 -11.49174 -11.23212 -10.89507 -10.81973 -10.73883 -10.60450 -10.56235 -10.45049 -10.42388 -10.25684 -10.17423 -9.76029 -8.90337 -8.63556 -8.56095 -7.75130 -6.39931 -4.08370 1.67399 1.77102 3.10073 3.18265 3.23689 3.43135 3.51754 3.92474 4.06845 4.50113 4.87323 4.96577 5.07114 5.13144 5.17387 5.18919 5.22946 5.31751 5.40740 5.50800 5.69607 5.72812 5.79903 5.80861 5.90855 5.94612 6.07102 6.14135 6.20911 6.28438 6.39187 6.46518 6.53399 6.66544 6.72601 6.75011 6.88530 7.04365 7.08133 7.40593 7.61363 7.95718 8.71648 9.08622 9.88254 10.77198 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.006890 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.628494 B = 4063.045913 C = 5973.916791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.323 6.323 3 C 0.117 3.883 4 C -0.157 4.157 5 C -0.075 4.075 6 C -0.096 4.096 7 C -0.001 4.001 8 C 0.410 3.590 9 O -0.552 6.552 10 O -0.206 6.206 11 C -0.386 4.386 12 H 0.094 0.906 13 C 0.045 3.955 14 N -0.861 5.861 15 Si 0.938 3.062 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.053 4.053 24 C -0.200 4.200 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.268 0.732 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -9.568 5.441 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.237 6.237 3 C 0.072 3.928 4 C -0.176 4.176 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.002 4.002 8 C 0.257 3.743 9 O -0.449 6.449 10 O -0.113 6.113 11 C -0.462 4.462 12 H 0.111 0.889 13 C -0.160 4.160 14 N -0.498 5.498 15 Si 0.763 3.237 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.148 4.148 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.071 4.071 24 C -0.219 4.219 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.346 -9.591 5.433 12.251 hybrid contribution -1.056 0.845 -0.248 1.375 sum 4.290 -8.746 5.185 11.035 Atomic orbital electron populations 1.23013 0.78719 1.03386 1.01644 1.86002 1.21173 1.27319 1.89159 1.19005 0.92363 0.83868 0.97556 1.20235 0.91172 0.98148 1.08002 1.20659 0.99527 0.90665 0.98431 1.19446 0.93456 0.93438 1.03307 1.19800 0.93477 0.89616 0.97325 1.22814 0.83067 0.86530 0.81925 1.90516 1.69858 1.39812 1.44673 1.83942 1.42516 1.46665 1.38190 1.21212 1.13305 1.04174 1.07503 0.88853 1.25280 0.97831 0.98269 0.94596 1.70003 1.37661 1.33182 1.08912 0.85755 0.79180 0.79937 0.78839 1.19905 1.20389 1.19154 1.22542 0.93842 1.01078 0.97302 1.22534 0.97961 1.00358 0.95506 1.22339 0.96196 1.00612 0.96588 1.22319 0.94012 1.03629 0.95161 1.21215 0.94187 0.97889 0.93798 1.21194 0.99975 0.92114 1.08616 0.92773 0.92486 0.88638 0.85588 0.85401 0.92174 0.90032 0.90551 0.91280 0.91488 0.91872 0.91699 0.91385 0.88960 0.84688 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.71 10.50 -19.42 -0.20 -4.92 16 3 C 0.12 1.89 6.69 -39.22 -0.26 1.63 16 4 C -0.16 -2.36 9.99 -39.43 -0.39 -2.76 16 5 C -0.07 -1.15 8.40 -39.60 -0.33 -1.48 16 6 C -0.10 -1.78 4.60 -104.60 -0.48 -2.26 16 7 C 0.00 -0.02 0.72 -155.69 -0.11 -0.13 16 8 C 0.41 10.10 5.09 36.01 0.18 10.29 16 9 O -0.55 -14.73 14.45 -19.05 -0.28 -15.01 16 10 O -0.21 -5.76 8.04 -20.70 -0.17 -5.93 16 11 C -0.39 -11.22 9.64 30.92 0.30 -10.92 16 12 H 0.09 2.76 6.86 -52.49 -0.36 2.40 16 13 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 14 N -0.86 -24.89 13.67 55.48 0.76 -24.13 16 15 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C -0.11 -1.88 5.76 -25.07 -0.14 -2.03 16 20 C -0.13 -1.83 6.91 -24.74 -0.17 -2.00 16 21 C -0.12 -1.60 6.83 -25.08 -0.17 -1.77 16 22 C -0.11 -1.88 5.89 -25.61 -0.15 -2.03 16 23 C -0.05 -1.07 8.81 -39.60 -0.35 -1.42 16 24 C -0.20 -3.53 9.04 -39.43 -0.36 -3.88 16 25 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 26 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.13 1.62 7.32 -52.48 -0.38 1.23 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 32 H 0.08 1.14 6.43 -51.93 -0.33 0.80 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.02 7.49 -51.93 -0.39 0.63 16 38 H 0.09 1.73 6.40 -51.93 -0.33 1.40 16 39 H 0.14 3.15 5.87 -52.49 -0.31 2.84 16 40 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -32.59 327.90 -6.82 -39.40 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.30 Total: 5.80 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.55 Total: -16.33 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.76 Total: -24.13 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.65 Total: -25.85 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.59 -6.82 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057574786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.455 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds