Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47645 * 2 1 4 4 C 1.50703 * 109.47531 * 179.97438 * 3 2 1 5 5 C 1.38402 * 119.82419 * 89.99853 * 4 3 2 6 6 C 1.37884 * 120.17081 * 180.02562 * 5 4 3 7 7 C 1.39850 * 119.82381 * 359.97438 * 6 5 4 8 8 C 1.47166 * 120.16746 * 179.97438 * 7 6 5 9 9 O 1.21254 * 120.00434 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47238 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 8 13 13 O 1.21213 * 119.99875 * 0.02562 * 12 11 10 14 14 O 1.34315 * 120.00083 * 179.97438 * 12 11 10 15 15 C 1.34919 * 117.00100 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00007 * 359.97438 * 15 14 12 17 17 C 1.38755 * 119.99983 * 179.97438 * 15 14 12 18 18 N 1.31446 * 119.99750 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00023 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47148 * 90.00030 * 19 17 15 21 21 H 1.48501 * 109.47201 * 209.99900 * 19 17 15 22 22 H 1.48504 * 109.47126 * 330.00132 * 19 17 15 23 23 C 1.39851 * 119.65869 * 0.25300 * 7 6 5 24 24 C 1.37882 * 119.82183 * 359.51662 * 23 7 6 25 25 H 1.09000 * 109.46806 * 59.99844 * 1 2 3 26 26 H 1.09003 * 109.47589 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47370 * 300.00333 * 1 2 3 28 28 H 1.09005 * 109.47017 * 239.99310 * 2 1 3 29 29 H 1.09009 * 109.46918 * 119.99909 * 2 1 3 30 30 H 1.09008 * 109.47009 * 59.99446 * 3 2 1 31 31 H 1.09000 * 109.47146 * 299.99948 * 3 2 1 32 32 H 1.08008 * 119.91553 * 359.97438 * 5 4 3 33 33 H 1.08007 * 120.08622 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.46953 * 299.99616 * 10 8 7 35 35 H 1.09000 * 109.47318 * 59.99214 * 10 8 7 36 36 H 1.09001 * 109.46832 * 299.99686 * 11 10 8 37 37 H 1.09004 * 109.47261 * 59.99705 * 11 10 8 38 38 H 0.96999 * 119.99652 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08622 * 179.72514 * 23 7 6 40 40 H 1.08001 * 119.91359 * 180.21051 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2359 1.4421 -1.1998 6 6 5.6148 1.4416 -1.2075 7 6 6.3171 1.4418 0.0018 8 6 7.7888 1.4406 0.0023 9 8 8.3955 1.4390 -1.0475 10 6 8.5418 1.4402 1.3078 11 6 10.0461 1.4396 1.0288 12 6 10.7991 1.4399 2.3342 13 8 10.1925 1.4401 3.3837 14 8 12.1422 1.4390 2.3348 15 6 12.7542 1.4387 3.5372 16 1 12.1656 1.4397 4.4427 17 6 14.1399 1.4372 3.6104 18 7 14.7361 1.4375 4.7818 19 14 15.1578 1.4348 2.0442 20 1 15.4292 2.8342 1.6280 21 1 16.4435 0.7335 2.2905 22 1 14.4102 0.7347 0.9689 23 6 5.6137 1.4372 1.2106 24 6 4.2350 1.4426 1.2016 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.6920 1.4416 -2.1329 33 1 6.1509 1.4410 -2.1451 34 1 8.2790 2.3306 1.8791 35 1 8.2775 0.5507 1.8795 36 1 10.3093 0.5495 0.4574 37 1 10.3101 2.3296 0.4573 38 1 15.7047 1.4361 4.8330 39 1 6.1491 1.4328 2.1485 40 1 3.6903 1.4425 2.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058075767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -116.707668 kcal Electronic energy + Delta-G solvation = -21416.378844 eV Core-core repulsion = 17967.754876 eV Total energy + Delta-G solvation = -3448.623968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32229 -39.22608 -38.59886 -35.52622 -35.41756 -32.82122 -32.27017 -31.51842 -31.18733 -27.79455 -26.27263 -24.59303 -23.07924 -22.58074 -21.46580 -20.01714 -19.30848 -17.94584 -17.46384 -16.49418 -16.02462 -15.81027 -15.65503 -15.13518 -14.75675 -14.60650 -14.42762 -14.01309 -13.92367 -13.77796 -13.60598 -13.15987 -12.91455 -12.45618 -12.39057 -12.37450 -12.02713 -11.65003 -11.60392 -11.39163 -11.31743 -11.30160 -11.02241 -10.92931 -10.44504 -10.33375 -9.75351 -9.67002 -9.24444 -9.16340 -8.98732 -8.65748 -6.34919 -4.10615 0.46255 1.13497 2.28498 3.16669 3.26642 3.39091 3.44672 3.55176 3.73370 4.26980 4.30266 4.42369 4.44527 4.64942 4.66885 4.73471 4.91553 4.99844 5.00674 5.11002 5.12115 5.28230 5.31377 5.32618 5.39900 5.42336 5.55820 5.69056 5.70391 5.76828 5.77858 5.86815 6.05894 6.07159 6.16497 6.20607 6.26905 6.43035 6.63542 7.46871 7.76142 8.05770 8.62954 9.03825 9.71110 10.73532 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.002444 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.319646 B =11455.592768 C =11998.788973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.055 4.055 5 C -0.134 4.134 6 C -0.059 4.059 7 C -0.171 4.171 8 C 0.398 3.602 9 O -0.453 6.453 10 C -0.150 4.150 11 C -0.097 4.097 12 C 0.409 3.591 13 O -0.544 6.544 14 O -0.251 6.251 15 C -0.382 4.382 16 H 0.109 0.891 17 C 0.065 3.935 18 N -0.876 5.876 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.066 4.066 24 C -0.132 4.132 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.279 0.721 39 H 0.138 0.862 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.020 -0.796 -12.041 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.123 4.123 4 C -0.055 4.055 5 C -0.152 4.152 6 C -0.078 4.078 7 C -0.172 4.172 8 C 0.276 3.724 9 O -0.329 6.329 10 C -0.188 4.188 11 C -0.135 4.135 12 C 0.256 3.744 13 O -0.440 6.440 14 O -0.160 6.160 15 C -0.458 4.458 16 H 0.127 0.873 17 C -0.139 4.139 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.084 4.084 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.156 0.844 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.629 -0.802 -12.209 28.400 hybrid contribution 0.564 0.024 -0.369 0.675 sum -25.065 -0.778 -12.578 28.055 Atomic orbital electron populations 1.21790 0.95532 1.01844 1.01885 1.21515 0.95796 0.95775 1.02645 1.20728 0.90572 0.97725 1.03247 1.20180 0.95905 0.96147 0.93233 1.20998 0.93895 1.02510 0.97763 1.21421 0.93998 0.94459 0.97885 1.20544 0.95041 1.07227 0.94350 1.22570 0.88164 0.70886 0.90789 1.90517 1.71056 1.36254 1.35039 1.21790 0.94467 1.06240 0.96274 1.20887 0.92470 1.05674 0.94431 1.22933 0.82343 0.78380 0.90786 1.90584 1.69182 1.49955 1.34289 1.83528 1.19475 1.77064 1.35926 1.20651 0.90615 1.51938 0.82556 0.87316 1.24556 0.95708 0.95566 0.98030 1.69611 1.10596 1.47825 1.23469 0.86220 0.78991 0.78960 0.82816 1.19861 1.20786 1.18334 1.21591 0.94311 0.94756 0.97765 1.21041 0.94053 1.02068 0.97802 0.92688 0.92572 0.92617 0.91752 0.91632 0.90658 0.90774 0.85628 0.84916 0.87341 0.87342 0.88413 0.88416 0.91077 0.84422 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.68 5.92 -26.74 -0.16 -0.84 16 3 C -0.09 -0.50 5.34 -27.89 -0.15 -0.65 16 4 C -0.05 -0.44 5.14 -104.50 -0.54 -0.98 16 5 C -0.13 -1.15 9.68 -39.65 -0.38 -1.54 16 6 C -0.06 -0.63 9.60 -39.11 -0.38 -1.00 16 7 C -0.17 -1.96 5.87 -105.07 -0.62 -2.58 16 8 C 0.40 5.34 7.12 -30.68 -0.22 5.12 16 9 O -0.45 -7.18 15.98 5.58 0.09 -7.09 16 10 C -0.15 -2.12 3.60 -27.88 -0.10 -2.22 16 11 C -0.10 -1.67 5.10 -27.89 -0.14 -1.81 16 12 C 0.41 9.57 7.91 36.00 0.28 9.86 16 13 O -0.54 -13.99 15.22 -19.05 -0.29 -14.28 16 14 O -0.25 -6.76 8.58 -20.71 -0.18 -6.94 16 15 C -0.38 -11.50 10.10 30.92 0.31 -11.19 16 16 H 0.11 3.58 7.09 -52.48 -0.37 3.21 16 17 C 0.06 1.89 5.49 -17.53 -0.10 1.79 16 18 N -0.88 -26.22 13.96 55.48 0.77 -25.44 16 19 Si 0.90 21.85 28.62 -169.99 -4.86 16.99 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.07 -0.65 9.47 -39.11 -0.37 -1.03 16 24 C -0.13 -1.13 9.68 -39.65 -0.38 -1.51 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.40 8.08 -51.92 -0.42 -0.02 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.13 1.37 7.65 -52.48 -0.40 0.97 16 34 H 0.11 1.46 8.05 -51.93 -0.42 1.04 16 35 H 0.11 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 37 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 38 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.14 1.23 7.05 -52.49 -0.37 0.86 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -33.92 348.97 -7.53 -41.45 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.75 Total: -1.03 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.57 Total: -8.92 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.77 Total: -25.44 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.38 Total: -28.30 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.92 -7.53 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058075767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.258 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds