Wall clock time and date at job start Tue Mar 31 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47645 * 2 1 4 4 C 1.50703 * 109.47531 * 179.97438 * 3 2 1 5 5 C 1.38402 * 119.82419 * 89.99853 * 4 3 2 6 6 C 1.37884 * 120.17081 * 180.02562 * 5 4 3 7 7 C 1.39850 * 119.82381 * 359.97438 * 6 5 4 8 8 C 1.47166 * 120.16746 * 179.97438 * 7 6 5 9 9 O 1.21254 * 120.00434 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47238 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 8 13 13 O 1.21213 * 119.99875 * 0.02562 * 12 11 10 14 14 O 1.34315 * 120.00083 * 179.97438 * 12 11 10 15 15 C 1.34919 * 117.00100 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00007 * 359.97438 * 15 14 12 17 17 C 1.38755 * 119.99983 * 179.97438 * 15 14 12 18 18 N 1.31446 * 119.99750 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00023 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47148 * 90.00030 * 19 17 15 21 21 H 1.48501 * 109.47201 * 209.99900 * 19 17 15 22 22 H 1.48504 * 109.47126 * 330.00132 * 19 17 15 23 23 C 1.39851 * 119.65869 * 0.25300 * 7 6 5 24 24 C 1.37882 * 119.82183 * 359.51662 * 23 7 6 25 25 H 1.09000 * 109.46806 * 59.99844 * 1 2 3 26 26 H 1.09003 * 109.47589 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47370 * 300.00333 * 1 2 3 28 28 H 1.09005 * 109.47017 * 239.99310 * 2 1 3 29 29 H 1.09009 * 109.46918 * 119.99909 * 2 1 3 30 30 H 1.09008 * 109.47009 * 59.99446 * 3 2 1 31 31 H 1.09000 * 109.47146 * 299.99948 * 3 2 1 32 32 H 1.08008 * 119.91553 * 359.97438 * 5 4 3 33 33 H 1.08007 * 120.08622 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.46953 * 299.99616 * 10 8 7 35 35 H 1.09000 * 109.47318 * 59.99214 * 10 8 7 36 36 H 1.09001 * 109.46832 * 299.99686 * 11 10 8 37 37 H 1.09004 * 109.47261 * 59.99705 * 11 10 8 38 38 H 0.96999 * 119.99652 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08622 * 179.72514 * 23 7 6 40 40 H 1.08001 * 119.91359 * 180.21051 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2359 1.4421 -1.1998 6 6 5.6148 1.4416 -1.2075 7 6 6.3171 1.4418 0.0018 8 6 7.7888 1.4406 0.0023 9 8 8.3955 1.4390 -1.0475 10 6 8.5418 1.4402 1.3078 11 6 10.0461 1.4396 1.0288 12 6 10.7991 1.4399 2.3342 13 8 10.1925 1.4401 3.3837 14 8 12.1422 1.4390 2.3348 15 6 12.7542 1.4387 3.5372 16 1 12.1656 1.4397 4.4427 17 6 14.1399 1.4372 3.6104 18 7 14.7361 1.4375 4.7818 19 14 15.1578 1.4348 2.0442 20 1 15.4292 2.8342 1.6280 21 1 16.4435 0.7335 2.2905 22 1 14.4102 0.7347 0.9689 23 6 5.6137 1.4372 1.2106 24 6 4.2350 1.4426 1.2016 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.6920 1.4416 -2.1329 33 1 6.1509 1.4410 -2.1451 34 1 8.2790 2.3306 1.8791 35 1 8.2775 0.5507 1.8795 36 1 10.3093 0.5495 0.4574 37 1 10.3101 2.3296 0.4573 38 1 15.7047 1.4361 4.8330 39 1 6.1491 1.4328 2.1485 40 1 3.6903 1.4425 2.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058075767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:47 Heat of formation + Delta-G solvation = -134.894519 kcal Electronic energy + Delta-G solvation = -21417.167486 eV Core-core repulsion = 17967.754876 eV Total energy + Delta-G solvation = -3449.412609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44078 -40.92888 -39.57057 -37.54012 -35.96241 -34.52506 -34.10988 -32.25940 -31.93273 -28.86590 -27.70876 -26.10186 -23.80327 -23.40468 -22.10378 -21.50359 -20.50506 -20.13993 -18.89912 -17.87041 -17.33857 -16.90904 -16.63965 -16.32228 -16.12437 -15.85952 -15.63257 -15.10615 -14.92726 -14.57161 -14.42914 -14.41449 -14.26887 -13.95948 -13.67768 -13.19807 -13.05499 -12.99895 -12.86065 -12.42374 -12.27456 -12.22714 -12.04778 -12.00581 -11.92364 -11.87040 -11.47934 -11.14894 -10.84361 -10.80531 -9.95888 -9.71606 -8.55746 -6.42229 -0.36813 0.42457 1.27631 1.33411 1.36107 1.51528 1.56809 2.23557 2.30768 2.79373 2.90198 3.09741 3.61549 3.77147 3.83942 4.02754 4.04712 4.12373 4.25292 4.27839 4.37851 4.43874 4.50983 4.54185 4.62522 4.77142 4.79509 4.86783 4.92234 4.96914 5.02528 5.08056 5.26224 5.27850 5.34854 5.41771 5.48261 5.48327 5.63072 5.88265 5.94445 6.43267 6.51798 6.81736 7.58024 8.57000 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.002444 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.319646 B =11455.592768 C =11998.788973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.049 4.049 5 C -0.135 4.135 6 C -0.069 4.069 7 C -0.192 4.192 8 C 0.409 3.591 9 O -0.483 6.483 10 C -0.147 4.147 11 C -0.087 4.087 12 C 0.412 3.588 13 O -0.570 6.570 14 O -0.262 6.262 15 C -0.408 4.408 16 H 0.061 0.939 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.982 3.018 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.253 1.253 23 C -0.071 4.071 24 C -0.136 4.136 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.289 0.711 39 H 0.143 0.857 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.474 -0.703 -14.018 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.049 4.049 5 C -0.152 4.152 6 C -0.088 4.088 7 C -0.193 4.193 8 C 0.290 3.710 9 O -0.361 6.361 10 C -0.184 4.184 11 C -0.124 4.124 12 C 0.259 3.741 13 O -0.466 6.466 14 O -0.171 6.171 15 C -0.484 4.484 16 H 0.079 0.921 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.189 1.189 22 H -0.177 1.177 23 C -0.089 4.089 24 C -0.154 4.154 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.114 -0.709 -14.161 30.598 hybrid contribution 0.802 -0.009 0.330 0.867 sum -26.313 -0.718 -13.832 29.735 Atomic orbital electron populations 1.21779 0.94760 1.02053 1.02337 1.21493 0.96442 0.95454 1.02212 1.20777 0.88817 0.98067 1.04337 1.20505 0.97226 0.94321 0.92833 1.21257 0.93214 1.01727 0.99051 1.21518 0.94945 0.94871 0.97431 1.20410 0.93740 1.09641 0.95470 1.22532 0.89067 0.69762 0.89676 1.90509 1.71725 1.38171 1.35647 1.21791 0.92386 1.06965 0.97241 1.21015 0.93465 1.07074 0.90860 1.24261 0.81426 0.75705 0.92706 1.90570 1.69374 1.50453 1.36163 1.83543 1.21168 1.78336 1.34045 1.20345 0.91234 1.54495 0.82357 0.92120 1.25561 0.96510 0.94237 1.02169 1.69703 1.11651 1.48215 1.25997 0.85096 0.77335 0.79810 0.77610 1.18454 1.18895 1.17699 1.21721 0.95093 0.94640 0.97424 1.21329 0.93617 1.01396 0.99013 0.92166 0.92541 0.92247 0.92140 0.92179 0.89676 0.89652 0.83484 0.85258 0.86712 0.86741 0.86928 0.86827 0.90090 0.83911 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.38 16 2 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 3 C -0.08 -0.74 5.34 29.85 0.16 -0.58 16 4 C -0.05 -0.67 5.14 -19.79 -0.10 -0.77 16 5 C -0.13 -2.05 9.68 22.22 0.22 -1.83 16 6 C -0.07 -1.39 9.60 22.58 0.22 -1.17 16 7 C -0.19 -4.23 5.87 -20.15 -0.12 -4.35 16 8 C 0.41 10.67 7.12 28.03 0.20 10.87 16 9 O -0.48 -14.95 15.98 -2.95 -0.05 -15.00 16 10 C -0.15 -4.01 3.60 29.85 0.11 -3.91 16 11 C -0.09 -2.90 5.10 29.85 0.15 -2.75 16 12 C 0.41 19.41 7.91 71.23 0.56 19.97 16 13 O -0.57 -30.01 15.22 20.76 0.32 -29.70 16 14 O -0.26 -14.21 8.58 14.84 0.13 -14.08 16 15 C -0.41 -25.42 10.10 67.94 0.69 -24.74 16 16 H 0.06 4.25 7.09 -2.91 -0.02 4.23 16 17 C 0.02 0.90 5.49 84.87 0.47 1.36 16 18 N -0.92 -55.86 13.96 21.63 0.30 -55.56 16 19 Si 0.98 44.61 28.62 68.60 1.96 46.57 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 23 C -0.07 -1.31 9.47 22.58 0.21 -1.09 16 24 C -0.14 -2.04 9.68 22.22 0.22 -1.83 16 25 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.63 8.08 -2.38 -0.02 0.61 16 31 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.13 2.60 7.65 -2.91 -0.02 2.58 16 34 H 0.11 3.00 8.05 -2.39 -0.02 2.98 16 35 H 0.11 3.00 8.04 -2.39 -0.02 2.98 16 36 H 0.11 3.51 8.10 -2.39 -0.02 3.49 16 37 H 0.11 3.52 8.10 -2.38 -0.02 3.50 16 38 H 0.29 15.89 8.31 -92.71 -0.77 15.12 16 39 H 0.14 2.40 7.05 -2.91 -0.02 2.38 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -75.02 348.97 7.56 -67.46 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.03 Total: 12.40 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.87 Total: -12.10 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.30 Total: -55.56 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: 0.40 Total: -58.77 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.96 Total: 46.57 kcal Total: -75.02 7.56 -67.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058075767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.431 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds