Wall clock time and date at job start Tue Mar 31 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35996 * 116.99512 * 2 1 4 4 C 1.38024 * 119.99420 * 0.02562 * 3 2 1 5 5 C 1.40048 * 119.82659 * 179.70688 * 4 3 2 6 6 C 1.46851 * 120.09857 * 180.27571 * 5 4 3 7 7 C 1.50699 * 119.99988 * 180.24388 * 6 5 4 8 8 O 1.21297 * 120.00356 * 0.24964 * 6 5 4 9 9 C 1.40011 * 119.80173 * 0.51810 * 5 4 3 10 10 C 1.37679 * 119.97815 * 359.50008 * 9 5 4 11 11 C 1.38924 * 120.17544 * 0.23054 * 10 9 5 12 12 O 1.35744 * 119.90058 * 179.97438 * 11 10 9 13 13 C 1.42897 * 117.00378 * 354.74288 * 12 11 10 14 14 C 1.52998 * 109.47361 * 184.93514 * 13 12 11 15 15 C 1.50704 * 115.54829 * 39.63727 * 14 13 12 16 16 H 1.07994 * 120.00005 * 264.73349 * 15 14 13 17 17 C 1.37872 * 119.99801 * 84.73963 * 15 14 13 18 18 N 1.31517 * 119.99835 * 184.83834 * 17 15 14 19 19 Si 1.86804 * 120.00119 * 4.83751 * 17 15 14 20 20 H 1.48497 * 109.46788 * 94.76109 * 19 17 15 21 21 H 1.48503 * 109.46917 * 214.75877 * 19 17 15 22 22 H 1.48494 * 109.47084 * 334.75807 * 19 17 15 23 23 C 1.53001 * 117.49828 * 253.92829 * 14 13 12 24 24 C 1.52998 * 117.49845 * 185.30586 * 14 13 12 25 25 H 1.09002 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47481 * 299.99932 * 1 2 3 27 27 H 1.09006 * 109.47450 * 60.00442 * 1 2 3 28 28 H 1.07999 * 120.08818 * 359.97430 * 4 3 2 29 29 H 1.09005 * 109.47436 * 90.00011 * 7 6 5 30 30 H 1.09007 * 109.47441 * 210.00123 * 7 6 5 31 31 H 1.09004 * 109.47371 * 329.99990 * 7 6 5 32 32 H 1.07995 * 120.01117 * 179.77504 * 9 5 4 33 33 H 1.07999 * 119.91511 * 180.24697 * 10 9 5 34 34 H 1.09002 * 109.47355 * 304.93944 * 13 12 11 35 35 H 1.09000 * 109.46898 * 64.93758 * 13 12 11 36 36 H 0.97007 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.08993 * 117.50322 * 0.02562 * 23 14 13 38 38 H 1.09007 * 117.49426 * 145.02113 * 23 14 13 39 39 H 1.09002 * 117.50060 * 214.98141 * 24 14 13 40 40 H 1.09001 * 117.50386 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2944 2.3692 0.0005 5 6 1.9337 3.6152 0.0067 6 6 1.1395 4.8504 0.0135 7 6 1.8297 6.1900 0.0146 8 8 -0.0721 4.7925 0.0182 9 6 3.3323 3.6797 0.0014 10 6 4.0745 2.5201 0.0005 11 6 3.4393 1.2845 0.0000 12 8 4.1765 0.1447 -0.0015 13 6 5.5934 0.2886 -0.1191 14 6 6.2393 -1.0943 -0.2261 15 6 5.4939 -2.0963 -1.0695 16 1 4.8131 -2.7936 -0.6042 17 6 5.6812 -2.1228 -2.4352 18 7 4.9614 -2.9314 -3.1821 19 14 6.9572 -1.0102 -3.2248 20 1 8.2313 -1.7556 -3.3870 21 1 6.4708 -0.5657 -4.5556 22 1 7.1838 0.1751 -2.3594 23 6 6.9892 -1.6204 0.9994 24 6 7.7678 -1.1612 -0.2351 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 0.2158 2.3141 0.0005 29 1 1.9921 6.5161 -1.0128 30 1 1.2071 6.9193 0.5330 31 1 2.7894 6.1039 0.5244 32 1 3.8288 4.6388 0.0025 33 1 5.1532 2.5710 0.0004 34 1 5.8269 0.8687 -1.0118 35 1 5.9805 0.8033 0.7603 36 1 5.0930 -2.9497 -4.1430 37 1 7.0221 -0.9817 1.8819 38 1 6.9434 -2.6916 1.1958 39 1 8.2343 -1.9303 -0.8508 40 1 8.3133 -0.2201 -0.1652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:28 Heat of formation + Delta-G solvation = -51.624395 kcal Electronic energy + Delta-G solvation = -23042.153046 eV Core-core repulsion = 19596.351300 eV Total energy + Delta-G solvation = -3445.801746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50482 -39.14491 -38.33580 -36.86529 -35.95193 -32.07092 -31.35827 -30.32740 -29.27253 -27.04884 -26.88352 -25.34897 -23.29580 -22.00241 -21.74382 -20.01936 -19.08904 -18.20501 -17.08177 -16.63632 -15.98569 -15.80650 -15.75621 -15.15910 -14.96312 -14.72347 -14.59726 -14.46480 -14.18042 -13.49255 -12.82271 -12.78062 -12.56179 -12.54634 -12.46260 -12.20430 -12.09358 -11.34469 -11.28761 -11.17476 -10.97161 -10.89562 -10.57833 -10.38744 -10.19618 -9.80338 -9.57954 -9.15543 -8.69469 -8.58552 -8.50389 -7.57588 -6.07448 -4.08589 0.75498 1.42511 2.45906 3.25015 3.33811 3.35778 3.47392 3.59711 3.84964 4.04324 4.40753 4.78795 4.81308 4.91611 4.95599 5.17028 5.17374 5.21166 5.26469 5.33825 5.37123 5.43715 5.58300 5.64913 5.70719 5.74167 5.78419 5.85895 6.01004 6.15421 6.23897 6.27172 6.33772 6.37113 6.59980 6.69139 6.86374 7.02221 7.41219 7.50747 7.69726 7.99129 8.53561 8.99214 9.54306 11.04956 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.004698 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.217235 B = 5958.755625 C = 6393.001699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.082 3.918 4 C -0.117 4.117 5 C -0.198 4.198 6 C 0.402 3.598 7 C -0.200 4.200 8 O -0.473 6.473 9 C -0.061 4.061 10 C -0.206 4.206 11 C 0.159 3.841 12 O -0.256 6.256 13 C 0.091 3.909 14 C -0.002 4.002 15 C -0.472 4.472 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.894 5.894 19 Si 0.874 3.126 20 H -0.279 1.279 21 H -0.293 1.293 22 H -0.260 1.260 23 C -0.177 4.177 24 C -0.191 4.191 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 14.808 6.876 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.036 3.964 4 C -0.136 4.136 5 C -0.199 4.199 6 C 0.282 3.718 7 C -0.257 4.257 8 O -0.350 6.350 9 C -0.079 4.079 10 C -0.225 4.225 11 C 0.110 3.890 12 O -0.166 6.166 13 C 0.016 3.984 14 C -0.003 4.003 15 C -0.509 4.509 16 H 0.099 0.901 17 C -0.124 4.124 18 N -0.531 5.531 19 Si 0.702 3.298 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.184 1.184 23 C -0.214 4.214 24 C -0.229 4.229 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.449 14.283 6.696 16.147 hybrid contribution 0.788 0.845 -0.665 1.333 sum -2.661 15.127 6.031 16.501 Atomic orbital electron populations 1.23066 0.79001 1.04058 1.00795 1.86339 1.20517 1.24910 1.88770 1.18171 0.89360 0.85421 1.03470 1.21193 1.00292 0.90458 1.01690 1.19985 0.94100 0.93961 1.11870 1.22304 0.88490 0.90511 0.70526 1.22226 1.02770 0.96020 1.04653 1.90514 1.16600 1.90091 1.37809 1.21087 0.92228 0.98123 0.96465 1.21095 1.00836 0.91007 1.09524 1.18928 0.88944 0.87266 0.93891 1.86413 1.19895 1.25897 1.84429 1.22752 0.77544 0.99379 0.98750 1.19267 0.89584 0.92876 0.98553 1.20128 1.24686 1.15493 0.90617 0.90142 1.24953 0.95580 0.94936 0.96979 1.69902 1.39510 1.38250 1.05458 0.86959 0.82137 0.82103 0.78639 1.20470 1.21979 1.18427 1.22924 1.06266 1.01001 0.91215 1.22998 0.95694 1.01560 1.02620 0.88045 0.93055 0.92895 0.84100 0.88576 0.89682 0.89504 0.84932 0.84246 0.92429 0.93799 0.92661 0.90806 0.89162 0.88980 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.51 10.28 -34.40 -0.35 -5.87 16 3 C 0.08 1.47 6.69 -39.19 -0.26 1.20 16 4 C -0.12 -1.81 8.58 -38.98 -0.33 -2.14 16 5 C -0.20 -2.71 5.87 -105.07 -0.62 -3.32 16 6 C 0.40 4.98 7.22 -30.83 -0.22 4.76 16 7 C -0.20 -1.58 9.75 36.01 0.35 -1.23 16 8 O -0.47 -7.31 17.08 5.54 0.09 -7.22 16 9 C -0.06 -0.75 9.35 -39.12 -0.37 -1.11 16 10 C -0.21 -3.06 9.00 -39.53 -0.36 -3.42 16 11 C 0.16 2.98 6.70 -38.86 -0.26 2.71 16 12 O -0.26 -5.66 9.28 -33.61 -0.31 -5.97 16 13 C 0.09 1.84 4.62 37.16 0.17 2.01 16 14 C 0.00 -0.04 1.21 -155.66 -0.19 -0.23 16 15 C -0.47 -13.15 8.82 -34.44 -0.30 -13.45 16 16 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -27.29 13.96 55.43 0.77 -26.51 16 19 Si 0.87 21.13 25.20 -169.99 -4.28 16.85 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.26 -5.74 5.23 56.52 0.30 -5.45 16 23 C -0.18 -3.46 9.88 -26.73 -0.26 -3.72 16 24 C -0.19 -3.83 7.33 -26.73 -0.20 -4.03 16 25 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 27 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 28 H 0.14 2.01 5.87 -52.49 -0.31 1.70 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.09 0.52 6.45 -51.93 -0.34 0.19 16 32 H 0.13 1.12 6.34 -52.49 -0.33 0.79 16 33 H 0.14 1.84 6.30 -52.49 -0.33 1.51 16 34 H 0.06 1.15 6.11 -51.93 -0.32 0.83 16 35 H 0.04 0.74 7.51 -51.93 -0.39 0.35 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.09 1.93 7.13 -51.93 -0.37 1.56 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -33.38 331.73 -6.41 -39.79 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.38 Total: 2.45 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.95 Total: -18.51 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.77 Total: -26.51 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.57 Total: -19.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.28 Total: 16.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.38 -6.41 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.834 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds