Wall clock time and date at job start Tue Mar 31 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35996 * 116.99512 * 2 1 4 4 C 1.38024 * 119.99420 * 0.02562 * 3 2 1 5 5 C 1.40048 * 119.82659 * 179.70688 * 4 3 2 6 6 C 1.46851 * 120.09857 * 180.27571 * 5 4 3 7 7 C 1.50699 * 119.99988 * 180.24388 * 6 5 4 8 8 O 1.21297 * 120.00356 * 0.24964 * 6 5 4 9 9 C 1.40011 * 119.80173 * 0.51810 * 5 4 3 10 10 C 1.37679 * 119.97815 * 359.50008 * 9 5 4 11 11 C 1.38924 * 120.17544 * 0.23054 * 10 9 5 12 12 O 1.35744 * 119.90058 * 179.97438 * 11 10 9 13 13 C 1.42897 * 117.00378 * 354.74288 * 12 11 10 14 14 C 1.52998 * 109.47361 * 184.93514 * 13 12 11 15 15 C 1.50704 * 115.54829 * 39.63727 * 14 13 12 16 16 H 1.07994 * 120.00005 * 264.73349 * 15 14 13 17 17 C 1.37872 * 119.99801 * 84.73963 * 15 14 13 18 18 N 1.31517 * 119.99835 * 184.83834 * 17 15 14 19 19 Si 1.86804 * 120.00119 * 4.83751 * 17 15 14 20 20 H 1.48497 * 109.46788 * 94.76109 * 19 17 15 21 21 H 1.48503 * 109.46917 * 214.75877 * 19 17 15 22 22 H 1.48494 * 109.47084 * 334.75807 * 19 17 15 23 23 C 1.53001 * 117.49828 * 253.92829 * 14 13 12 24 24 C 1.52998 * 117.49845 * 185.30586 * 14 13 12 25 25 H 1.09002 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47481 * 299.99932 * 1 2 3 27 27 H 1.09006 * 109.47450 * 60.00442 * 1 2 3 28 28 H 1.07999 * 120.08818 * 359.97430 * 4 3 2 29 29 H 1.09005 * 109.47436 * 90.00011 * 7 6 5 30 30 H 1.09007 * 109.47441 * 210.00123 * 7 6 5 31 31 H 1.09004 * 109.47371 * 329.99990 * 7 6 5 32 32 H 1.07995 * 120.01117 * 179.77504 * 9 5 4 33 33 H 1.07999 * 119.91511 * 180.24697 * 10 9 5 34 34 H 1.09002 * 109.47355 * 304.93944 * 13 12 11 35 35 H 1.09000 * 109.46898 * 64.93758 * 13 12 11 36 36 H 0.97007 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.08993 * 117.50322 * 0.02562 * 23 14 13 38 38 H 1.09007 * 117.49426 * 145.02113 * 23 14 13 39 39 H 1.09002 * 117.50060 * 214.98141 * 24 14 13 40 40 H 1.09001 * 117.50386 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2944 2.3692 0.0005 5 6 1.9337 3.6152 0.0067 6 6 1.1395 4.8504 0.0135 7 6 1.8297 6.1900 0.0146 8 8 -0.0721 4.7925 0.0182 9 6 3.3323 3.6797 0.0014 10 6 4.0745 2.5201 0.0005 11 6 3.4393 1.2845 0.0000 12 8 4.1765 0.1447 -0.0015 13 6 5.5934 0.2886 -0.1191 14 6 6.2393 -1.0943 -0.2261 15 6 5.4939 -2.0963 -1.0695 16 1 4.8131 -2.7936 -0.6042 17 6 5.6812 -2.1228 -2.4352 18 7 4.9614 -2.9314 -3.1821 19 14 6.9572 -1.0102 -3.2248 20 1 8.2313 -1.7556 -3.3870 21 1 6.4708 -0.5657 -4.5556 22 1 7.1838 0.1751 -2.3594 23 6 6.9892 -1.6204 0.9994 24 6 7.7678 -1.1612 -0.2351 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 0.2158 2.3141 0.0005 29 1 1.9921 6.5161 -1.0128 30 1 1.2071 6.9193 0.5330 31 1 2.7894 6.1039 0.5244 32 1 3.8288 4.6388 0.0025 33 1 5.1532 2.5710 0.0004 34 1 5.8269 0.8687 -1.0118 35 1 5.9805 0.8033 0.7603 36 1 5.0930 -2.9497 -4.1430 37 1 7.0221 -0.9817 1.8819 38 1 6.9434 -2.6916 1.1958 39 1 8.2343 -1.9303 -0.8508 40 1 8.3133 -0.2201 -0.1652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:28 Heat of formation + Delta-G solvation = -73.824452 kcal Electronic energy + Delta-G solvation = -23043.115713 eV Core-core repulsion = 19596.351300 eV Total energy + Delta-G solvation = -3446.764413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70525 -40.27969 -39.71219 -38.31376 -37.29711 -34.21231 -32.35032 -31.47778 -30.27646 -28.54689 -28.00462 -27.31194 -24.41112 -23.30894 -23.20365 -21.13604 -20.82182 -19.46890 -18.59190 -17.96633 -17.52451 -17.20527 -16.80987 -16.73138 -16.07204 -15.90086 -15.84699 -15.70372 -15.59917 -14.84065 -14.75830 -14.17214 -13.90025 -13.66473 -13.43969 -13.16023 -13.03571 -13.00072 -12.82203 -12.52205 -12.24215 -12.17729 -12.06380 -11.96844 -11.82053 -11.40378 -11.00420 -10.79309 -10.57677 -10.26855 -9.84473 -8.85417 -8.24957 -6.31105 -0.35630 0.29531 1.35237 1.36622 1.41468 1.49035 2.25095 2.33774 2.38961 2.71968 3.09433 3.12263 3.23607 3.71205 3.92328 4.02655 4.07139 4.13866 4.24138 4.24581 4.28347 4.32587 4.39188 4.40906 4.58920 4.60690 4.64662 4.70602 4.73255 4.86207 4.99038 5.03909 5.11354 5.21111 5.26862 5.33503 5.48446 5.60840 5.70284 6.17103 6.34286 6.56019 6.66700 6.79177 7.35850 8.92231 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.004698 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.217235 B = 5958.755625 C = 6393.001699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.053 3.947 4 C -0.123 4.123 5 C -0.201 4.201 6 C 0.403 3.597 7 C -0.193 4.193 8 O -0.511 6.511 9 C -0.041 4.041 10 C -0.198 4.198 11 C 0.118 3.882 12 O -0.303 6.303 13 C 0.096 3.904 14 C -0.042 4.042 15 C -0.471 4.471 16 H 0.016 0.984 17 C 0.012 3.988 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.302 1.302 22 H -0.216 1.216 23 C -0.165 4.165 24 C -0.174 4.174 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.262 0.738 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 19.688 7.812 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.008 3.992 4 C -0.142 4.142 5 C -0.202 4.202 6 C 0.285 3.715 7 C -0.249 4.249 8 O -0.391 6.391 9 C -0.058 4.058 10 C -0.216 4.216 11 C 0.070 3.930 12 O -0.215 6.215 13 C 0.021 3.979 14 C -0.043 4.043 15 C -0.509 4.509 16 H 0.034 0.966 17 C -0.184 4.184 18 N -0.596 5.596 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.230 1.230 22 H -0.138 1.138 23 C -0.202 4.202 24 C -0.210 4.210 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.203 0.797 33 H 0.182 0.818 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.776 19.187 7.675 20.680 hybrid contribution -0.216 -0.704 -0.861 1.133 sum -0.992 18.483 6.815 19.724 Atomic orbital electron populations 1.23279 0.76993 1.05154 1.01923 1.86261 1.22954 1.26528 1.89376 1.18533 0.89890 0.85699 1.05097 1.21337 1.00445 0.90774 1.01638 1.20445 0.95378 0.93898 1.10467 1.22933 0.87922 0.91795 0.68842 1.22277 1.03561 0.92659 1.06404 1.90516 1.18360 1.90628 1.39581 1.21592 0.91297 0.99468 0.93481 1.21440 1.02142 0.90032 1.08027 1.19384 0.89072 0.87877 0.96664 1.86343 1.20873 1.28423 1.85896 1.22692 0.77092 0.97468 1.00633 1.19263 0.91230 0.93487 1.00275 1.20259 1.23627 1.15509 0.91480 0.96559 1.25950 0.98084 0.96832 0.97566 1.70101 1.42450 1.41337 1.05687 0.85901 0.78932 0.81438 0.77410 1.19288 1.22973 1.13808 1.22981 1.04402 1.00857 0.91993 1.23066 0.93291 1.03009 1.01682 0.87070 0.91319 0.92251 0.83980 0.86540 0.88874 0.86664 0.79655 0.81848 0.92203 0.89742 0.92894 0.87079 0.90833 0.90362 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.34 -13.72 10.28 -79.47 -0.82 -14.54 16 3 C 0.05 1.97 6.69 22.52 0.15 2.12 16 4 C -0.12 -3.79 8.58 22.66 0.19 -3.59 16 5 C -0.20 -4.97 5.87 -20.16 -0.12 -5.09 16 6 C 0.40 8.76 7.22 27.94 0.20 8.96 16 7 C -0.19 -2.03 9.75 71.24 0.69 -1.34 16 8 O -0.51 -15.09 17.08 -3.08 -0.05 -15.14 16 9 C -0.04 -0.81 9.35 22.57 0.21 -0.60 16 10 C -0.20 -5.22 9.00 22.30 0.20 -5.02 16 11 C 0.12 4.39 6.70 22.74 0.15 4.54 16 12 O -0.30 -13.65 9.28 -76.65 -0.71 -14.37 16 13 C 0.10 3.66 4.62 71.98 0.33 3.99 16 14 C -0.04 -1.85 1.21 -52.93 -0.06 -1.92 16 15 C -0.47 -27.62 8.82 25.60 0.23 -27.40 16 16 H 0.02 1.11 8.06 -2.91 -0.02 1.08 16 17 C 0.01 0.69 5.47 84.65 0.46 1.16 16 18 N -0.96 -62.06 13.96 21.45 0.30 -61.76 16 19 Si 0.94 43.39 25.20 68.60 1.73 45.12 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 22 H -0.22 -8.37 5.23 99.48 0.52 -7.85 16 23 C -0.17 -6.13 9.88 30.59 0.30 -5.83 16 24 C -0.17 -6.32 7.33 30.59 0.22 -6.10 16 25 H 0.11 2.82 8.14 -2.39 -0.02 2.81 16 26 H 0.07 1.66 7.66 -2.39 -0.02 1.64 16 27 H 0.06 1.56 7.66 -2.38 -0.02 1.55 16 28 H 0.14 4.17 5.87 -2.91 -0.02 4.16 16 29 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.11 0.58 6.45 -2.38 -0.02 0.56 16 32 H 0.19 1.72 6.34 -2.91 -0.02 1.70 16 33 H 0.16 3.44 6.30 -2.91 -0.02 3.43 16 34 H 0.06 2.18 6.11 -2.39 -0.01 2.16 16 35 H 0.08 2.47 7.51 -2.39 -0.02 2.46 16 36 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 37 H 0.11 3.29 8.08 -2.39 -0.02 3.28 16 38 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 39 H 0.08 3.07 7.13 -2.39 -0.02 3.06 16 40 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -82.19 331.73 5.60 -76.59 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.87 Total: 18.48 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 4.28 Total: -34.39 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.30 Total: -61.76 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.58 Total: -44.04 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.73 Total: 45.12 kcal Total: -82.19 5.60 -76.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.764 kcal (2) G-P(sol) polarization free energy of solvation -82.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds