Wall clock time and date at job start Tue Mar 31 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46773 * 2 1 4 4 C 1.36003 * 116.99728 * 179.97438 * 3 2 1 5 5 C 1.38034 * 119.98911 * 359.72832 * 4 3 2 6 6 C 1.40038 * 119.82255 * 179.72705 * 5 4 3 7 7 C 1.46863 * 120.09773 * 180.27215 * 6 5 4 8 8 O 1.21294 * 119.99926 * 180.27077 * 7 6 5 9 9 C 1.40012 * 119.80390 * 0.54618 * 6 5 4 10 10 C 1.37673 * 119.97738 * 359.72246 * 9 6 5 11 11 C 1.38919 * 120.17782 * 0.02562 * 10 9 6 12 12 O 1.35752 * 119.90693 * 180.02562 * 11 10 9 13 13 C 1.42899 * 116.99244 * 354.65293 * 12 11 10 14 14 C 1.53002 * 109.46983 * 179.43967 * 13 12 11 15 15 C 1.50701 * 115.55327 * 279.86605 * 14 13 12 16 16 H 1.07997 * 119.99987 * 144.24187 * 15 14 13 17 17 C 1.37878 * 119.99660 * 324.24018 * 15 14 13 18 18 N 1.31512 * 119.99828 * 338.11598 * 17 15 14 19 19 Si 1.86795 * 119.99731 * 158.11647 * 17 15 14 20 20 H 1.48500 * 109.47185 * 89.99920 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99944 * 19 17 15 22 22 H 1.48501 * 109.47210 * 329.99499 * 19 17 15 23 23 C 1.53002 * 117.50032 * 134.14999 * 14 13 12 24 24 C 1.52993 * 60.00229 * 252.51497 * 23 14 13 25 25 H 1.08999 * 109.47582 * 59.99967 * 1 2 3 26 26 H 1.09002 * 109.47233 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46802 * 299.99902 * 1 2 3 28 28 H 1.08996 * 109.47232 * 119.99654 * 2 1 3 29 29 H 1.08997 * 109.47443 * 240.00237 * 2 1 3 30 30 H 1.07995 * 120.08696 * 359.97438 * 5 4 3 31 31 H 1.08006 * 119.99906 * 0.27224 * 7 6 5 32 32 H 1.07998 * 120.01270 * 179.70704 * 9 6 5 33 33 H 1.08000 * 119.91320 * 179.97438 * 10 9 6 34 34 H 1.08996 * 109.47648 * 299.44276 * 13 12 11 35 35 H 1.09003 * 109.47474 * 59.44525 * 13 12 11 36 36 H 0.97010 * 119.99960 * 185.35172 * 18 17 15 37 37 H 1.08996 * 117.49768 * 0.02562 * 23 14 13 38 38 H 1.08999 * 117.49661 * 145.02099 * 23 14 13 39 39 H 1.08997 * 117.50398 * 252.50790 * 24 23 14 40 40 H 1.09002 * 117.51848 * 107.47892 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.1952 0.4308 0.0067 6 6 5.5830 0.6183 0.0015 7 6 6.4830 -0.5423 0.0020 8 8 7.6847 -0.3778 0.0024 9 6 6.1100 1.9154 0.0016 10 6 5.2640 3.0016 0.0010 11 6 3.8874 2.8146 0.0009 12 8 3.0584 3.8896 -0.0001 13 6 3.6661 5.1775 0.1176 14 6 2.5829 6.2576 0.0837 15 6 2.0702 6.6213 -1.2859 16 1 1.0290 6.8727 -1.4235 17 6 2.9306 6.6333 -2.3633 18 7 4.2253 6.7579 -2.1694 19 14 2.2570 6.4724 -4.0981 20 1 1.9567 7.8221 -4.6397 21 1 3.2654 5.8059 -4.9608 22 1 1.0135 5.6610 -4.0730 23 6 2.6652 7.3735 1.1272 24 6 1.5863 6.2951 1.2440 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.7838 -0.5677 0.0116 31 1 6.0747 -1.5422 0.0020 32 1 7.1797 2.0639 0.0023 33 1 5.6716 4.0017 0.0015 34 1 4.2101 5.2379 1.0601 35 1 4.3574 5.3303 -0.7113 36 1 4.8233 6.8444 -2.9284 37 1 3.4912 7.3385 1.8375 38 1 2.3486 8.3712 0.8230 39 1 0.5599 6.5831 1.0168 40 1 1.7021 5.5500 2.0312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:05 Heat of formation + Delta-G solvation = -73.526953 kcal Electronic energy + Delta-G solvation = -23031.789228 eV Core-core repulsion = 19585.037716 eV Total energy + Delta-G solvation = -3446.751512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62096 -40.00781 -39.72207 -38.16404 -37.15500 -34.30322 -32.77091 -31.78648 -30.49035 -28.39868 -27.44152 -25.41847 -24.79137 -23.01990 -22.61013 -21.95659 -21.04590 -19.45424 -18.62672 -18.07224 -17.59265 -17.22268 -16.80930 -16.63787 -16.17867 -15.95006 -15.74104 -15.60594 -15.23466 -14.92681 -14.43610 -13.97730 -13.77034 -13.66036 -13.42583 -13.33974 -13.11292 -12.89117 -12.75273 -12.42599 -12.31092 -12.15889 -12.09362 -11.80440 -11.58494 -11.39021 -11.10158 -10.77183 -10.67444 -10.06534 -9.81427 -8.82458 -8.22096 -6.20752 -0.32198 0.30186 1.33992 1.39614 1.49926 1.51491 2.27616 2.29094 2.35838 2.75507 2.91852 3.37265 3.61596 3.71807 3.93339 4.06902 4.14450 4.18153 4.19247 4.25873 4.35400 4.44435 4.50859 4.53995 4.64767 4.75610 4.87510 4.89631 4.91694 4.95208 5.00192 5.13191 5.17600 5.29994 5.33543 5.42522 5.49376 5.61035 5.80428 6.27239 6.32040 6.53249 6.69613 6.73681 7.35479 8.80838 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.005270 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.388212 B = 5311.820222 C = 5903.318830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.039 3.961 3 O -0.332 6.332 4 C 0.065 3.935 5 C -0.104 4.104 6 C -0.213 4.213 7 C 0.402 3.598 8 O -0.509 6.509 9 C -0.059 4.059 10 C -0.205 4.205 11 C 0.119 3.881 12 O -0.310 6.310 13 C 0.096 3.904 14 C 0.012 3.988 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.034 3.966 18 N -0.896 5.896 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.273 1.273 23 C -0.182 4.182 24 C -0.182 4.182 25 H 0.050 0.950 26 H 0.109 0.891 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.188 0.812 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.037 0.963 35 H 0.092 0.908 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -17.176 4.861 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 O -0.247 6.247 4 C 0.020 3.980 5 C -0.122 4.122 6 C -0.214 4.214 7 C 0.264 3.736 8 O -0.385 6.385 9 C -0.077 4.077 10 C -0.224 4.224 11 C 0.071 3.929 12 O -0.223 6.223 13 C 0.021 3.979 14 C 0.011 3.989 15 C -0.547 4.547 16 H 0.071 0.929 17 C -0.167 4.167 18 N -0.534 5.534 19 Si 0.767 3.233 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.220 4.220 24 C -0.219 4.219 25 H 0.070 0.930 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.205 0.795 31 H 0.179 0.821 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.076 -16.974 4.742 17.657 hybrid contribution -0.107 0.817 -0.884 1.208 sum -1.183 -16.158 3.858 16.654 Atomic orbital electron populations 1.21809 0.92286 1.04163 1.02552 1.23188 0.96663 0.80643 1.02970 1.86253 1.17643 1.31588 1.89256 1.18315 0.84161 0.90950 1.04595 1.21519 0.91737 0.98555 1.00415 1.20897 0.94784 0.95857 1.09858 1.24522 0.86888 0.94362 0.67806 1.90525 1.20206 1.90183 1.37571 1.21236 1.00037 0.91478 0.94972 1.21170 0.91322 1.01062 1.08873 1.19323 0.89925 0.86924 0.96735 1.86130 1.35662 1.14307 1.86181 1.22583 0.96593 0.78321 1.00371 1.18954 0.95811 0.93845 0.90253 1.20668 0.95089 1.47311 0.91665 0.92869 1.25547 0.94970 0.93787 1.02415 1.69908 1.03738 1.47658 1.32082 0.85803 0.78543 0.78698 0.80283 1.19469 1.20619 1.19822 1.22979 1.00659 0.94779 1.03571 1.22782 0.95157 1.01932 1.02046 0.93045 0.87228 0.92518 0.89721 0.90306 0.79542 0.82097 0.84636 0.85331 0.94474 0.88994 0.92406 0.89911 0.90209 0.90142 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.33 -10.83 9.92 -79.55 -0.79 -11.62 16 4 C 0.07 2.15 6.69 22.52 0.15 2.30 16 5 C -0.10 -2.38 8.78 22.66 0.20 -2.18 16 6 C -0.21 -5.27 5.87 -20.15 -0.12 -5.39 16 7 C 0.40 7.69 11.44 70.08 0.80 8.49 16 8 O -0.51 -14.17 17.15 -3.07 -0.05 -14.22 16 9 C -0.06 -1.83 9.58 22.57 0.22 -1.61 16 10 C -0.21 -7.63 9.03 22.30 0.20 -7.43 16 11 C 0.12 4.81 6.70 22.73 0.15 4.96 16 12 O -0.31 -14.91 9.88 -76.75 -0.76 -15.66 16 13 C 0.10 4.66 4.41 71.98 0.32 4.98 16 14 C 0.01 0.60 1.98 -52.92 -0.10 0.50 16 15 C -0.51 -28.63 8.98 25.60 0.23 -28.40 16 16 H 0.05 3.00 7.91 -2.91 -0.02 2.97 16 17 C 0.03 1.86 5.04 84.66 0.43 2.29 16 18 N -0.90 -50.05 11.13 21.45 0.24 -49.81 16 19 Si 0.94 43.82 29.60 68.60 2.03 45.85 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 C -0.18 -8.19 9.88 30.59 0.30 -7.88 16 24 C -0.18 -8.05 9.93 30.59 0.30 -7.75 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.16 7.64 -2.39 -0.02 1.14 16 29 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 30 H 0.19 2.29 6.28 -2.91 -0.02 2.28 16 31 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.14 4.02 7.64 -2.91 -0.02 4.00 16 33 H 0.13 5.03 6.27 -2.91 -0.02 5.02 16 34 H 0.04 1.68 7.72 -2.39 -0.02 1.66 16 35 H 0.09 4.90 4.66 -2.39 -0.01 4.89 16 36 H 0.27 14.12 8.32 -92.70 -0.77 13.35 16 37 H 0.08 3.39 8.08 -2.39 -0.02 3.37 16 38 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.05 342.15 5.92 -64.13 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.04 Total: 19.21 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 4.21 Total: -37.87 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.24 Total: -49.81 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.60 Total: -41.51 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.05 5.92 -64.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.399 kcal (2) G-P(sol) polarization free energy of solvation -70.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds