Wall clock time and date at job start Tue Mar 31 2020 06:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00311 * 2 1 4 4 H 1.48494 * 109.47342 * 270.00156 * 3 2 1 5 5 H 1.48503 * 109.46830 * 30.00052 * 3 2 1 6 6 H 1.48506 * 109.47124 * 149.99759 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00322 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47349 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47040 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99827 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99837 * 0.02562 * 13 12 11 15 15 N 1.34769 * 119.99748 * 180.27050 * 13 12 11 16 16 C 1.39945 * 119.99959 * 174.41250 * 15 13 12 17 17 C 1.38898 * 120.05368 * 326.55756 * 16 15 13 18 18 C 1.38157 * 119.97087 * 179.76389 * 17 16 15 19 19 C 1.38038 * 120.01250 * 0.47089 * 18 17 16 20 20 C 1.38662 * 120.14995 * 359.80560 * 19 18 17 21 21 C 1.37859 * 120.10985 * 359.95755 * 20 19 18 22 22 C 1.51096 * 107.26789 * 179.97438 * 20 19 18 23 23 O 1.43935 * 105.95541 * 17.70053 * 22 20 19 24 24 C 1.43939 * 104.95544 * 331.52313 * 23 22 20 25 25 H 0.96996 * 119.99343 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47034 * 59.99621 * 9 7 2 27 27 H 1.09002 * 109.46760 * 299.99757 * 9 7 2 28 28 H 1.09008 * 109.46984 * 60.00231 * 10 9 7 29 29 H 1.08995 * 109.47467 * 300.00097 * 10 9 7 30 30 H 1.08999 * 109.46874 * 60.00248 * 11 10 9 31 31 H 1.09002 * 109.47230 * 300.00193 * 11 10 9 32 32 H 0.96992 * 120.00181 * 0.02562 * 12 11 10 33 33 H 0.96998 * 120.00284 * 354.42146 * 15 13 12 34 34 H 1.08006 * 120.01237 * 359.97307 * 17 16 15 35 35 H 1.08007 * 119.99606 * 180.27829 * 18 17 16 36 36 H 1.08001 * 120.06485 * 180.02562 * 21 20 19 37 37 H 1.08998 * 110.15596 * 136.82266 * 22 20 19 38 38 H 1.09007 * 110.15138 * 258.58277 * 22 20 19 39 39 H 1.09004 * 110.14634 * 147.60082 * 24 23 22 40 40 H 1.08997 * 110.15716 * 269.27866 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.3649 -4.2643 -0.0005 14 8 8.1550 -3.3401 0.0009 15 7 7.8140 -5.5349 -0.0067 16 6 9.1846 -5.7920 -0.1244 17 6 9.9871 -4.9520 -0.8858 18 6 11.3408 -5.2046 -0.9968 19 6 11.8939 -6.2969 -0.3592 20 6 11.0944 -7.1405 0.3970 21 6 9.7438 -6.8910 0.5155 22 6 11.9875 -8.2241 0.9547 23 8 13.3330 -7.7260 0.8398 24 6 13.3041 -6.8352 -0.2904 25 1 -0.4849 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6585 -3.1503 -0.8904 29 1 3.6578 -3.1507 0.8896 30 1 5.9148 -2.1230 0.8899 31 1 5.9148 -2.1228 -0.8901 32 1 5.4095 -4.7552 -0.0016 33 1 7.1874 -6.2713 0.0703 34 1 9.5535 -4.0998 -1.3881 35 1 11.9660 -4.5492 -1.5851 36 1 9.1218 -7.5483 1.1050 37 1 11.7440 -8.4101 2.0007 38 1 11.8751 -9.1395 0.3737 39 1 14.0111 -6.0187 -0.1431 40 1 13.5446 -7.3794 -1.2037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092165241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:32 Heat of formation + Delta-G solvation = -46.191488 kcal Electronic energy + Delta-G solvation = -21530.701477 eV Core-core repulsion = 18117.428071 eV Total energy + Delta-G solvation = -3413.273406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.19442 -40.18817 -37.77689 -35.69692 -34.71896 -33.38300 -31.82913 -31.60594 -30.33703 -28.13759 -27.09368 -24.78909 -23.32111 -22.24388 -21.85443 -20.88910 -20.22779 -18.52329 -17.69680 -16.85426 -16.73176 -16.56693 -16.22316 -15.61078 -15.22080 -14.73461 -14.42942 -14.37556 -14.02956 -13.90538 -13.75229 -13.21291 -13.01200 -12.73389 -12.59232 -12.16275 -11.98974 -11.95443 -11.48925 -11.14024 -10.94260 -10.65221 -10.42570 -10.11258 -10.07257 -9.88023 -9.74018 -9.27059 -9.13955 -9.01227 -8.58807 -8.20880 -6.09591 -4.08631 0.91555 1.02780 2.43189 2.95788 3.28967 3.36809 3.40730 3.47365 3.57131 3.90306 4.08856 4.29763 4.41458 4.59505 4.91821 4.97498 5.02874 5.04773 5.19785 5.24427 5.30833 5.41008 5.42786 5.58293 5.59625 5.88347 5.94606 5.95595 6.01280 6.19100 6.26380 6.38066 6.38449 6.56247 6.71889 6.72409 6.80341 7.17915 7.31361 7.71443 7.80995 8.40285 8.46688 8.93856 9.52476 11.03545 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.050324 B = 0.002230 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.257996 B =12551.297001 C =12921.557417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.131 3.869 12 N -0.734 5.734 13 C 0.700 3.300 14 O -0.574 6.574 15 N -0.690 5.690 16 C 0.182 3.818 17 C -0.115 4.115 18 C -0.071 4.071 19 C -0.157 4.157 20 C -0.114 4.114 21 C -0.125 4.125 22 C 0.094 3.906 23 O -0.363 6.363 24 C 0.094 3.906 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.407 0.593 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.271 -17.665 -1.157 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.450 6.450 15 N -0.337 5.337 16 C 0.086 3.914 17 C -0.136 4.136 18 C -0.089 4.089 19 C -0.158 4.158 20 C -0.115 4.115 21 C -0.146 4.146 22 C 0.017 3.983 23 O -0.281 6.281 24 C 0.018 3.982 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.243 0.757 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.914 -16.668 -1.022 29.168 hybrid contribution -0.653 0.286 -0.074 0.717 sum 23.261 -16.382 -1.097 28.472 Atomic orbital electron populations 1.69912 1.06316 1.26992 1.50885 1.25036 0.94768 0.99274 0.94441 0.86771 0.80405 0.83491 0.78604 1.20228 1.21351 1.18875 1.21081 0.89261 0.94512 1.51233 0.91015 1.19501 0.97305 0.91335 0.96742 1.21718 0.90422 1.01172 1.01808 1.21609 0.95938 0.79529 1.02124 1.45371 1.04386 1.10594 1.78423 1.15977 0.83416 0.82535 0.78072 1.90948 1.54738 1.42739 1.56608 1.42662 1.06080 1.07686 1.77288 1.17356 0.82882 0.95618 0.95571 1.21217 0.93256 1.00613 0.98500 1.20263 0.94422 0.95526 0.98734 1.20974 0.96525 0.97273 1.01033 1.20710 0.93873 0.97444 0.99491 1.19969 0.93622 0.99387 1.01633 1.21720 0.80399 0.94256 1.01903 1.89078 1.27169 1.62267 1.49615 1.21702 0.93590 0.93086 0.89810 0.92668 0.96249 0.96673 0.92052 0.92033 0.91666 0.91655 0.76841 0.75701 0.83879 0.85340 0.85361 0.88494 0.90456 0.88613 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 11 C 0.13 2.06 5.67 -4.04 -0.02 2.03 16 12 N -0.73 -9.30 5.56 -65.22 -0.36 -9.66 16 13 C 0.70 9.61 8.30 -86.92 -0.72 8.89 16 14 O -0.57 -10.12 14.04 5.29 0.07 -10.04 16 15 N -0.69 -7.03 5.35 -14.20 -0.08 -7.10 16 16 C 0.18 2.00 6.28 -83.66 -0.53 1.47 16 17 C -0.12 -1.37 8.65 -39.37 -0.34 -1.71 16 18 C -0.07 -0.71 10.03 -39.68 -0.40 -1.11 16 19 C -0.16 -1.50 6.32 -104.34 -0.66 -2.16 16 20 C -0.11 -1.06 6.32 -104.41 -0.66 -1.72 16 21 C -0.13 -1.15 9.96 -39.47 -0.39 -1.54 16 22 C 0.09 0.72 7.63 36.20 0.28 0.99 16 23 O -0.36 -3.48 11.72 -35.23 -0.41 -3.89 16 24 C 0.09 0.75 7.63 36.20 0.28 1.02 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 3.84 8.49 -40.82 -0.35 3.50 16 33 H 0.41 2.70 8.83 -40.82 -0.36 2.34 16 34 H 0.14 1.92 6.42 -52.48 -0.34 1.58 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -33.98 336.16 -9.08 -43.07 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.63 Total: 1.76 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.85 Total: -9.35 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.33 Total: -43.44 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.34 Total: -13.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.98 -9.08 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092165241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.123 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds