Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00311 * 2 1 4 4 H 1.48494 * 109.47342 * 270.00156 * 3 2 1 5 5 H 1.48503 * 109.46830 * 30.00052 * 3 2 1 6 6 H 1.48506 * 109.47124 * 149.99759 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00322 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47349 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47040 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99827 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99837 * 0.02562 * 13 12 11 15 15 N 1.34769 * 119.99748 * 180.27050 * 13 12 11 16 16 C 1.39945 * 119.99959 * 174.41250 * 15 13 12 17 17 C 1.38898 * 120.05368 * 326.55756 * 16 15 13 18 18 C 1.38157 * 119.97087 * 179.76389 * 17 16 15 19 19 C 1.38038 * 120.01250 * 0.47089 * 18 17 16 20 20 C 1.38662 * 120.14995 * 359.80560 * 19 18 17 21 21 C 1.37859 * 120.10985 * 359.95755 * 20 19 18 22 22 C 1.51096 * 107.26789 * 179.97438 * 20 19 18 23 23 O 1.43935 * 105.95541 * 17.70053 * 22 20 19 24 24 C 1.43939 * 104.95544 * 331.52313 * 23 22 20 25 25 H 0.96996 * 119.99343 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47034 * 59.99621 * 9 7 2 27 27 H 1.09002 * 109.46760 * 299.99757 * 9 7 2 28 28 H 1.09008 * 109.46984 * 60.00231 * 10 9 7 29 29 H 1.08995 * 109.47467 * 300.00097 * 10 9 7 30 30 H 1.08999 * 109.46874 * 60.00248 * 11 10 9 31 31 H 1.09002 * 109.47230 * 300.00193 * 11 10 9 32 32 H 0.96992 * 120.00181 * 0.02562 * 12 11 10 33 33 H 0.96998 * 120.00284 * 354.42146 * 15 13 12 34 34 H 1.08006 * 120.01237 * 359.97307 * 17 16 15 35 35 H 1.08007 * 119.99606 * 180.27829 * 18 17 16 36 36 H 1.08001 * 120.06485 * 180.02562 * 21 20 19 37 37 H 1.08998 * 110.15596 * 136.82266 * 22 20 19 38 38 H 1.09007 * 110.15138 * 258.58277 * 22 20 19 39 39 H 1.09004 * 110.14634 * 147.60082 * 24 23 22 40 40 H 1.08997 * 110.15716 * 269.27866 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.3649 -4.2643 -0.0005 14 8 8.1550 -3.3401 0.0009 15 7 7.8140 -5.5349 -0.0067 16 6 9.1846 -5.7920 -0.1244 17 6 9.9871 -4.9520 -0.8858 18 6 11.3408 -5.2046 -0.9968 19 6 11.8939 -6.2969 -0.3592 20 6 11.0944 -7.1405 0.3970 21 6 9.7438 -6.8910 0.5155 22 6 11.9875 -8.2241 0.9547 23 8 13.3330 -7.7260 0.8398 24 6 13.3041 -6.8352 -0.2904 25 1 -0.4849 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6585 -3.1503 -0.8904 29 1 3.6578 -3.1507 0.8896 30 1 5.9148 -2.1230 0.8899 31 1 5.9148 -2.1228 -0.8901 32 1 5.4095 -4.7552 -0.0016 33 1 7.1874 -6.2713 0.0703 34 1 9.5535 -4.0998 -1.3881 35 1 11.9660 -4.5492 -1.5851 36 1 9.1218 -7.5483 1.1050 37 1 11.7440 -8.4101 2.0007 38 1 11.8751 -9.1395 0.3737 39 1 14.0111 -6.0187 -0.1431 40 1 13.5446 -7.3794 -1.2037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092165241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = -70.176217 kcal Electronic energy + Delta-G solvation = -21531.741533 eV Core-core repulsion = 18117.428071 eV Total energy + Delta-G solvation = -3414.313462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99998 -41.07898 -38.60075 -37.01654 -35.66830 -35.15778 -33.31533 -32.53302 -31.23195 -29.09925 -28.42893 -25.60926 -24.73633 -23.18544 -22.66165 -22.26388 -21.43151 -19.55983 -18.99842 -18.40126 -17.50411 -17.29165 -17.05559 -16.68868 -16.43977 -16.10542 -15.66929 -15.33773 -15.25835 -14.86408 -14.76325 -14.48332 -13.97099 -13.82711 -13.71870 -13.57828 -13.21539 -12.77845 -12.71218 -12.70054 -12.22875 -11.92832 -11.78832 -11.59978 -11.47954 -11.33070 -11.28248 -10.80287 -10.75988 -10.17996 -9.83543 -8.99966 -8.29284 -6.33014 0.13511 0.29210 1.37186 1.38989 1.47107 1.50595 1.94318 2.36432 2.68012 2.98255 3.06528 3.06708 3.33326 3.65231 3.92964 4.07248 4.21281 4.25033 4.29984 4.45034 4.47040 4.50152 4.61245 4.66870 4.77683 4.85745 4.89484 4.91043 5.03873 5.12817 5.22047 5.30586 5.33654 5.43789 5.49624 5.56434 5.65177 5.73521 5.88922 5.94790 6.27471 6.75152 6.91337 7.31808 7.39029 8.86973 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.050324 B = 0.002230 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.257996 B =12551.297001 C =12921.557417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.145 3.855 12 N -0.723 5.723 13 C 0.699 3.301 14 O -0.615 6.615 15 N -0.672 5.672 16 C 0.162 3.838 17 C -0.138 4.138 18 C -0.077 4.077 19 C -0.164 4.164 20 C -0.121 4.121 21 C -0.119 4.119 22 C 0.093 3.907 23 O -0.382 6.382 24 C 0.094 3.906 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.414 0.586 33 H 0.426 0.574 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.281 -18.818 -0.860 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.021 3.979 12 N -0.379 5.379 13 C 0.399 3.601 14 O -0.495 6.495 15 N -0.321 5.321 16 C 0.067 3.933 17 C -0.158 4.158 18 C -0.096 4.096 19 C -0.165 4.165 20 C -0.122 4.122 21 C -0.140 4.140 22 C 0.017 3.983 23 O -0.301 6.301 24 C 0.018 3.982 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.265 0.735 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.174 0.826 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 25.923 -17.897 -0.727 31.509 hybrid contribution -1.270 0.524 -0.173 1.385 sum 24.652 -17.372 -0.900 30.172 Atomic orbital electron populations 1.70059 1.08201 1.28094 1.52729 1.25994 0.95607 1.03459 0.94307 0.85703 0.79534 0.78535 0.79166 1.19265 1.21154 1.17074 1.21465 0.91912 0.93236 1.50138 0.94340 1.19470 0.94039 0.94704 0.96882 1.21476 0.91807 0.98119 1.02333 1.21215 0.94140 0.81030 1.01500 1.45046 1.04555 1.10021 1.78239 1.16068 0.83125 0.83139 0.77735 1.90926 1.55767 1.44381 1.58428 1.42383 1.06393 1.06975 1.76336 1.17535 0.82969 0.96426 0.96390 1.21181 0.94361 1.00635 0.99671 1.20407 0.93975 0.96117 0.99059 1.21253 0.97678 0.96970 1.00580 1.21058 0.94106 0.97867 0.99146 1.20186 0.93990 0.98785 1.00989 1.21902 0.79172 0.94177 1.03072 1.89058 1.28169 1.62634 1.50264 1.21841 0.92729 0.93453 0.90214 0.92549 0.96073 0.96128 0.91540 0.91577 0.92480 0.92272 0.74903 0.73541 0.86137 0.83911 0.82633 0.87124 0.88423 0.87656 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 2 C 0.00 0.18 5.47 84.65 0.46 0.65 16 3 Si 0.95 44.00 27.47 68.60 1.88 45.88 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.06 16 7 C -0.53 -29.58 9.66 25.60 0.25 -29.34 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.41 5.27 30.59 0.16 -3.25 16 11 C 0.15 4.38 5.67 86.38 0.49 4.87 16 12 N -0.72 -17.24 5.56 -478.53 -2.66 -19.91 16 13 C 0.70 18.56 8.30 179.05 1.49 20.05 16 14 O -0.62 -21.74 14.04 -3.99 -0.06 -21.79 16 15 N -0.67 -12.71 5.35 -317.12 -1.70 -14.41 16 16 C 0.16 3.39 6.28 38.17 0.24 3.63 16 17 C -0.14 -3.28 8.65 22.41 0.19 -3.08 16 18 C -0.08 -1.50 10.03 22.20 0.22 -1.28 16 19 C -0.16 -2.88 6.32 -19.68 -0.12 -3.00 16 20 C -0.12 -1.98 6.32 -19.73 -0.12 -2.10 16 21 C -0.12 -1.91 9.96 22.34 0.22 -1.69 16 22 C 0.09 1.16 7.63 71.36 0.54 1.71 16 23 O -0.38 -6.48 11.72 -148.98 -1.75 -8.23 16 24 C 0.09 1.29 7.63 71.36 0.54 1.84 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 27 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 28 H 0.07 2.21 8.14 -2.38 -0.02 2.20 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.41 7.11 8.49 -92.71 -0.79 6.32 16 33 H 0.43 4.65 8.83 -92.71 -0.82 3.83 16 34 H 0.12 3.38 6.42 -2.91 -0.02 3.36 16 35 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.37 336.16 0.12 -74.25 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.59 Total: 14.30 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.69 Total: -11.47 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -4.06 Total: -92.94 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.80 Total: -30.02 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -74.37 0.12 -74.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092165241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.074 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds