Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.50701 * 109.47460 * 314.30370 * 13 12 11 15 15 C 1.38281 * 119.98539 * 259.72966 * 14 13 12 16 16 C 1.38208 * 120.14134 * 179.73174 * 15 14 13 17 17 C 1.38281 * 120.14120 * 0.55065 * 16 15 14 18 18 C 1.38501 * 120.03319 * 359.70791 * 17 16 15 19 19 C 1.38498 * 119.98323 * 80.00164 * 14 13 12 20 20 O 1.36495 * 131.54149 * 0.02562 * 19 14 13 21 21 C 1.43989 * 105.48837 * 197.26186 * 20 19 14 22 22 O 1.36495 * 131.54504 * 179.97438 * 18 17 16 23 23 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 24 24 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 25 25 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 27 27 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 28 28 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 29 29 H 1.09005 * 109.44264 * 173.95995 * 11 10 9 30 30 H 1.08997 * 109.46672 * 74.30687 * 13 12 11 31 31 H 1.09001 * 109.46912 * 194.30455 * 13 12 11 32 32 H 1.08001 * 119.92800 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.92889 * 180.30156 * 16 15 14 34 34 H 1.07999 * 119.98266 * 179.73862 * 17 16 15 35 35 H 1.08997 * 110.57216 * 91.44315 * 21 20 19 36 36 H 1.09001 * 110.56907 * 214.30847 * 21 20 19 37 37 H 1.09002 * 109.49046 * 303.14169 * 23 12 11 38 38 H 1.08998 * 109.52013 * 183.07630 * 23 12 11 39 39 H 1.08998 * 109.62919 * 350.89226 * 24 9 7 40 40 H 1.09003 * 109.62806 * 111.28045 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.3442 -5.5547 -3.7692 15 6 -1.4430 -6.3823 -3.6284 16 6 -2.5255 -6.2491 -4.4773 17 6 -2.5096 -5.2951 -5.4783 18 6 -1.4102 -4.4663 -5.6286 19 6 -0.3214 -4.5969 -4.7694 20 8 0.6236 -3.6766 -5.1200 21 6 -0.0641 -2.7119 -5.9383 22 8 -1.1467 -3.4642 -6.5172 23 6 2.0050 -4.6199 -1.0153 24 6 1.8270 -3.6607 0.1664 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6890 -2.6165 -0.6952 27 1 0.0878 -1.3412 -1.6703 28 1 1.2904 -3.0196 -2.9943 29 1 -0.4419 -3.4300 -2.9982 30 1 1.7577 -5.5862 -3.4015 31 1 0.8075 -6.6843 -2.3721 32 1 -1.4570 -7.1319 -2.8510 33 1 -3.3839 -6.8941 -4.3612 34 1 -3.3551 -5.1960 -6.1429 35 1 -0.4486 -1.8956 -5.3268 36 1 0.5962 -2.3301 -6.7170 37 1 2.8209 -4.2701 -1.6479 38 1 2.2361 -5.6176 -0.6422 39 1 2.7785 -3.5357 0.6831 40 1 1.0847 -4.0603 0.8574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = 10.007942 kcal Electronic energy + Delta-G solvation = -24047.916637 eV Core-core repulsion = 20637.080221 eV Total energy + Delta-G solvation = -3410.836416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.19765 -38.63968 -37.41151 -36.21012 -34.42638 -31.93143 -30.39730 -30.03313 -29.71124 -27.11947 -25.76342 -24.69620 -23.12395 -22.58764 -22.37302 -21.03612 -19.06323 -18.00236 -17.45171 -17.11423 -16.77875 -16.22639 -15.20876 -14.65977 -14.56183 -14.39694 -14.25037 -14.01988 -13.62211 -13.42486 -13.12506 -12.92751 -12.88659 -12.63667 -12.51334 -12.16336 -11.48028 -11.34804 -11.11324 -10.94576 -10.88163 -10.70538 -10.46135 -10.22758 -10.02878 -9.72046 -9.56375 -8.73714 -8.47349 -8.04050 -7.67272 -6.62770 -5.75337 -3.16379 1.18460 1.20479 2.82328 3.39116 3.44644 3.45992 3.49039 3.59810 4.40848 4.51256 4.63951 4.76352 4.84650 4.99127 5.09955 5.16924 5.24373 5.41226 5.47823 5.49180 5.61140 5.73264 5.97100 6.00112 6.04437 6.11082 6.19587 6.30273 6.33489 6.41006 6.47389 6.52603 6.58373 6.75576 6.96942 7.16907 7.28676 7.62849 7.69209 7.74766 7.85132 8.46411 9.24033 9.87739 10.46907 11.33275 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019021 B = 0.005213 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.697540 B = 5369.483836 C = 6150.144840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.180 3.820 11 C 0.034 3.966 12 N -0.525 5.525 13 C 0.093 3.907 14 C -0.057 4.057 15 C -0.094 4.094 16 C -0.114 4.114 17 C -0.105 4.105 18 C 0.026 3.974 19 C 0.047 3.953 20 O -0.302 6.302 21 C 0.211 3.789 22 O -0.313 6.313 23 C 0.045 3.955 24 C 0.149 3.851 25 H 0.254 0.746 26 H 0.024 0.976 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 -12.103 -11.048 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.054 3.946 11 C -0.095 4.095 12 N -0.250 5.250 13 C -0.034 4.034 14 C -0.058 4.058 15 C -0.113 4.113 16 C -0.132 4.132 17 C -0.124 4.124 18 C -0.018 4.018 19 C 0.002 3.998 20 O -0.218 6.218 21 C 0.100 3.900 22 O -0.230 6.230 23 C -0.084 4.084 24 C 0.022 3.978 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.146 0.854 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.353 -11.960 -10.863 16.501 hybrid contribution 1.119 1.399 -0.685 1.918 sum -2.234 -10.561 -11.548 15.808 Atomic orbital electron populations 1.70028 1.05197 1.25493 1.54137 1.25013 0.95280 0.98290 1.01140 0.86385 0.78913 0.83481 0.78103 1.21166 1.21622 1.20861 1.19155 0.92530 0.84896 1.41464 0.91740 1.44131 1.34396 1.01255 1.52039 1.20947 0.88856 0.96453 0.88343 1.23126 0.98887 0.89148 0.98299 1.62166 1.34540 1.05874 1.22464 1.21051 0.93565 0.97326 0.91498 1.18920 0.97968 0.95351 0.93568 1.20835 0.92004 0.99057 0.99388 1.20864 0.98978 0.98212 0.95138 1.20024 0.95622 0.96333 1.00404 1.19781 0.96352 0.94563 0.91120 1.19557 0.87986 0.95247 0.97009 1.87460 1.31967 1.36106 1.66258 1.25648 0.83217 0.89681 0.91477 1.87326 1.52578 1.41007 1.42047 1.22631 0.89543 0.99418 0.96850 1.20967 0.97773 0.86497 0.92513 0.93627 0.95787 0.89663 0.94949 0.92534 0.94365 0.90052 0.84447 0.84607 0.85062 0.89424 0.85360 0.95380 0.91973 0.92621 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 11.16 55.49 0.62 -26.03 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 3 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -15.51 3.03 -171.73 -0.52 -16.03 16 10 C 0.18 4.53 5.45 -3.36 -0.02 4.51 16 11 C 0.03 0.72 4.14 -3.47 -0.01 0.70 16 12 N -0.53 -9.85 4.77 -235.48 -1.12 -10.97 16 13 C 0.09 1.43 5.47 -4.98 -0.03 1.41 16 14 C -0.06 -0.85 4.56 -104.51 -0.48 -1.32 16 15 C -0.09 -1.15 9.66 -39.58 -0.38 -1.53 16 16 C -0.11 -1.23 10.04 -39.58 -0.40 -1.62 16 17 C -0.10 -1.27 10.06 -39.47 -0.40 -1.66 16 18 C 0.03 0.38 7.15 -39.09 -0.28 0.10 16 19 C 0.05 0.74 4.67 -39.09 -0.18 0.56 16 20 O -0.30 -4.89 9.33 -45.67 -0.43 -5.32 16 21 C 0.21 2.77 8.89 101.05 0.90 3.67 16 22 O -0.31 -4.50 11.40 -45.67 -0.52 -5.02 16 23 C 0.04 0.84 5.58 -3.71 -0.02 0.82 16 24 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 28 H 0.03 0.72 7.12 -51.93 -0.37 0.35 16 29 H 0.06 1.15 5.04 -51.93 -0.26 0.88 16 30 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.08 1.06 8.00 -51.93 -0.42 0.64 16 32 H 0.14 1.37 8.03 -52.49 -0.42 0.95 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 39 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -32.18 318.99 -9.29 -41.48 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.55 Total: -1.43 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.55 Total: 1.63 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -1.02 Total: -53.04 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.95 Total: -10.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.18 -9.29 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.486 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds