Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.50701 * 109.47460 * 314.30370 * 13 12 11 15 15 C 1.38281 * 119.98539 * 259.72966 * 14 13 12 16 16 C 1.38208 * 120.14134 * 179.73174 * 15 14 13 17 17 C 1.38281 * 120.14120 * 0.55065 * 16 15 14 18 18 C 1.38501 * 120.03319 * 359.70791 * 17 16 15 19 19 C 1.38498 * 119.98323 * 80.00164 * 14 13 12 20 20 O 1.36495 * 131.54149 * 0.02562 * 19 14 13 21 21 C 1.43989 * 105.48837 * 197.26186 * 20 19 14 22 22 O 1.36495 * 131.54504 * 179.97438 * 18 17 16 23 23 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 24 24 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 25 25 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 27 27 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 28 28 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 29 29 H 1.09005 * 109.44264 * 173.95995 * 11 10 9 30 30 H 1.08997 * 109.46672 * 74.30687 * 13 12 11 31 31 H 1.09001 * 109.46912 * 194.30455 * 13 12 11 32 32 H 1.08001 * 119.92800 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.92889 * 180.30156 * 16 15 14 34 34 H 1.07999 * 119.98266 * 179.73862 * 17 16 15 35 35 H 1.08997 * 110.57216 * 91.44315 * 21 20 19 36 36 H 1.09001 * 110.56907 * 214.30847 * 21 20 19 37 37 H 1.09002 * 109.49046 * 303.14169 * 23 12 11 38 38 H 1.08998 * 109.52013 * 183.07630 * 23 12 11 39 39 H 1.08998 * 109.62919 * 350.89226 * 24 9 7 40 40 H 1.09003 * 109.62806 * 111.28045 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.3442 -5.5547 -3.7692 15 6 -1.4430 -6.3823 -3.6284 16 6 -2.5255 -6.2491 -4.4773 17 6 -2.5096 -5.2951 -5.4783 18 6 -1.4102 -4.4663 -5.6286 19 6 -0.3214 -4.5969 -4.7694 20 8 0.6236 -3.6766 -5.1200 21 6 -0.0641 -2.7119 -5.9383 22 8 -1.1467 -3.4642 -6.5172 23 6 2.0050 -4.6199 -1.0153 24 6 1.8270 -3.6607 0.1664 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6890 -2.6165 -0.6952 27 1 0.0878 -1.3412 -1.6703 28 1 1.2904 -3.0196 -2.9943 29 1 -0.4419 -3.4300 -2.9982 30 1 1.7577 -5.5862 -3.4015 31 1 0.8075 -6.6843 -2.3721 32 1 -1.4570 -7.1319 -2.8510 33 1 -3.3839 -6.8941 -4.3612 34 1 -3.3551 -5.1960 -6.1429 35 1 -0.4486 -1.8956 -5.3268 36 1 0.5962 -2.3301 -6.7170 37 1 2.8209 -4.2701 -1.6479 38 1 2.2361 -5.6176 -0.6422 39 1 2.7785 -3.5357 0.6831 40 1 1.0847 -4.0603 0.8574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = -11.636169 kcal Electronic energy + Delta-G solvation = -24048.855197 eV Core-core repulsion = 20637.080221 eV Total energy + Delta-G solvation = -3411.774975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.24117 -40.01063 -38.66982 -37.36081 -36.13883 -33.63519 -31.89860 -31.65218 -30.85892 -28.74060 -26.78868 -26.33891 -24.54151 -24.21713 -23.72496 -22.26768 -20.83479 -19.01255 -18.75999 -18.53489 -18.17141 -17.33054 -16.96622 -16.27746 -15.97586 -15.58128 -15.50393 -15.36185 -15.15859 -14.94463 -14.92504 -14.44277 -14.09964 -13.84373 -13.68919 -13.26650 -13.14422 -12.95923 -12.67181 -12.58346 -12.43620 -12.13010 -12.08216 -11.86826 -11.80952 -11.57885 -11.40799 -10.60363 -9.80168 -9.25417 -8.99878 -8.69721 -7.89321 -5.34400 0.18659 0.21234 1.44224 1.46797 1.53819 1.82603 2.48740 2.50784 2.58349 3.15371 3.26532 3.40905 3.66086 3.77789 3.85736 3.98120 4.14326 4.23384 4.27934 4.35698 4.37020 4.43332 4.50940 4.55855 4.64195 4.70147 4.76714 4.86443 4.99580 5.05623 5.17076 5.17492 5.33881 5.39402 5.50004 5.55061 5.58549 5.62495 6.12910 6.14768 6.21587 6.35168 7.10568 7.81408 8.36575 9.17441 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019021 B = 0.005213 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.697540 B = 5369.483836 C = 6150.144840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.614 5.614 10 C 0.190 3.810 11 C 0.062 3.938 12 N -0.532 5.532 13 C 0.098 3.902 14 C -0.081 4.081 15 C -0.092 4.092 16 C -0.102 4.102 17 C -0.105 4.105 18 C 0.002 3.998 19 C 0.018 3.982 20 O -0.327 6.327 21 C 0.206 3.794 22 O -0.322 6.322 23 C 0.055 3.945 24 C 0.144 3.856 25 H 0.250 0.750 26 H -0.005 1.005 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.114 0.886 32 H 0.165 0.835 33 H 0.177 0.823 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.018 0.982 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -14.027 -11.444 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.338 5.338 10 C 0.064 3.936 11 C -0.067 4.067 12 N -0.257 5.257 13 C -0.029 4.029 14 C -0.082 4.082 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.042 4.042 19 C -0.027 4.027 20 O -0.243 6.243 21 C 0.095 3.905 22 O -0.238 6.238 23 C -0.074 4.074 24 C 0.018 3.982 25 H 0.059 0.941 26 H 0.013 0.987 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.132 0.868 32 H 0.182 0.818 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.099 0.901 36 H 0.177 0.823 37 H 0.036 0.964 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.511 -13.921 -11.261 18.246 hybrid contribution 1.109 1.903 -0.548 2.270 sum -2.402 -12.018 -11.809 17.019 Atomic orbital electron populations 1.70192 1.06708 1.25936 1.55379 1.25807 0.96069 1.01525 1.01219 0.85328 0.77585 0.79104 0.78374 1.20600 1.21822 1.19833 1.19513 0.92918 0.86089 1.41105 0.91441 1.44408 1.34380 1.02353 1.52665 1.20666 0.87849 0.96018 0.89076 1.22637 0.98525 0.89538 0.95991 1.62118 1.34657 1.05176 1.23741 1.21110 0.93738 0.97214 0.90796 1.19135 0.98893 0.96370 0.93770 1.21241 0.91227 0.98660 0.99909 1.21361 0.99591 0.97531 0.93487 1.20514 0.95396 0.95567 1.00850 1.20190 0.97162 0.95383 0.91496 1.19899 0.88534 0.95991 0.98251 1.87399 1.33070 1.36872 1.67001 1.25889 0.83544 0.88984 0.92048 1.87286 1.52960 1.41247 1.42357 1.22509 0.89136 1.00453 0.95316 1.21146 0.97679 0.85395 0.93952 0.94057 0.98660 0.92952 0.96624 0.91945 0.95235 0.86814 0.81779 0.80597 0.82706 0.90082 0.82348 0.96363 0.87909 0.91884 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 11.16 21.65 0.24 -56.76 16 2 C -0.05 -2.93 4.93 84.86 0.42 -2.51 16 3 Si 0.97 45.77 29.59 68.60 2.03 47.80 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.27 -15.21 9.63 84.03 0.81 -14.40 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 9 N -0.61 -32.71 3.03 -697.24 -2.11 -34.83 16 10 C 0.19 9.95 5.45 86.50 0.47 10.43 16 11 C 0.06 2.67 4.14 86.54 0.36 3.02 16 12 N -0.53 -19.37 4.77 -898.91 -4.29 -23.66 16 13 C 0.10 2.83 5.47 85.56 0.47 3.29 16 14 C -0.08 -2.27 4.56 -19.79 -0.09 -2.36 16 15 C -0.09 -1.94 9.66 22.27 0.22 -1.72 16 16 C -0.10 -1.82 10.04 22.27 0.22 -1.60 16 17 C -0.10 -2.28 10.06 22.34 0.22 -2.05 16 18 C 0.00 0.05 7.15 22.59 0.16 0.21 16 19 C 0.02 0.56 4.67 22.59 0.11 0.66 16 20 O -0.33 -10.85 9.33 -76.00 -0.71 -11.56 16 21 C 0.21 5.56 8.89 113.37 1.01 6.56 16 22 O -0.32 -9.26 11.40 -75.99 -0.87 -10.13 16 23 C 0.05 1.96 5.58 86.38 0.48 2.44 16 24 C 0.14 6.25 6.69 86.35 0.58 6.82 16 25 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.05 3.05 6.12 -2.39 -0.01 3.04 16 28 H 0.02 0.72 7.12 -2.39 -0.02 0.70 16 29 H 0.06 2.60 5.04 -2.38 -0.01 2.58 16 30 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.11 2.52 8.00 -2.39 -0.02 2.50 16 32 H 0.16 2.51 8.03 -2.91 -0.02 2.49 16 33 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 2.86 8.11 -2.39 -0.02 2.84 16 39 H 0.06 2.59 7.95 -2.39 -0.02 2.57 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.02 318.99 0.77 -71.25 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.04 Total: 9.08 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.43 Total: 8.80 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -6.16 Total: -115.25 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.58 Total: -21.69 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.02 0.77 -71.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.615 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds