Wall clock time and date at job start Tue Mar 31 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35681 * 116.99942 * 2 1 4 4 C 1.38612 * 120.16227 * 0.02562 * 3 2 1 5 5 C 1.38128 * 120.11067 * 179.97438 * 4 3 2 6 6 C 1.38581 * 120.44003 * 359.97438 * 5 4 3 7 7 C 1.37739 * 120.32461 * 0.02562 * 6 5 4 8 8 C 1.39955 * 119.88213 * 359.97438 * 7 6 5 9 9 C 1.46895 * 120.21888 * 179.97438 * 8 7 6 10 10 C 1.50699 * 120.00201 * 255.00135 * 9 8 7 11 11 C 1.35113 * 120.00018 * 75.00113 * 9 8 7 12 12 C 1.41756 * 120.00074 * 187.26860 * 11 9 8 13 13 O 1.21642 * 120.00313 * 6.06611 * 12 11 9 14 14 O 1.34940 * 119.99715 * 186.06341 * 12 11 9 15 15 C 1.42904 * 116.99550 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.47336 * 329.99860 * 15 14 12 17 17 C 1.52998 * 109.47089 * 89.99958 * 15 14 12 18 18 C 1.50699 * 109.46970 * 210.00235 * 15 14 12 19 19 H 1.08001 * 120.00068 * 359.97438 * 18 15 14 20 20 C 1.37880 * 120.00274 * 180.02562 * 18 15 14 21 21 N 1.31514 * 119.99689 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00418 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46863 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47096 * 119.99434 * 22 20 18 25 25 H 1.48497 * 109.47236 * 239.99930 * 22 20 18 26 26 H 1.08999 * 109.46666 * 299.99716 * 1 2 3 27 27 H 1.08998 * 109.46854 * 59.99283 * 1 2 3 28 28 H 1.08999 * 109.46836 * 179.97438 * 1 2 3 29 29 H 1.07993 * 119.94542 * 0.24163 * 4 3 2 30 30 H 1.07997 * 119.78224 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.83894 * 180.02562 * 6 5 4 32 32 H 1.08004 * 120.06432 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47012 * 95.53466 * 10 9 8 34 34 H 1.08996 * 109.46853 * 215.53890 * 10 9 8 35 35 H 1.09001 * 109.46964 * 335.53628 * 10 9 8 36 36 H 1.08002 * 119.99762 * 7.26826 * 11 9 8 37 37 H 1.08999 * 109.47273 * 299.99800 * 17 15 14 38 38 H 1.08998 * 109.46931 * 60.00113 * 17 15 14 39 39 H 1.09002 * 109.47137 * 179.97438 * 17 15 14 40 40 H 0.96998 * 120.00380 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2933 2.3736 0.0005 5 6 1.9215 3.6037 0.0011 6 6 3.3049 3.6856 0.0016 7 6 4.0694 2.5399 0.0011 8 6 3.4470 1.2864 0.0005 9 6 4.2551 0.0597 -0.0006 10 6 4.3871 -0.7546 -1.2618 11 6 4.8802 -0.3386 1.1292 12 6 5.7817 -1.4320 1.0927 13 8 6.0775 -1.9412 0.0283 14 8 6.3117 -1.9078 2.2387 15 6 7.2133 -3.0110 2.1274 16 1 6.9422 -3.6160 1.2621 17 6 8.6409 -2.4878 1.9569 18 6 7.1325 -3.8535 3.3743 19 1 6.4603 -3.5742 4.1721 20 6 7.9175 -4.9803 3.4971 21 7 8.7364 -5.3202 2.5258 22 14 7.8179 -6.0242 5.0430 23 1 6.8284 -5.4309 5.9780 24 1 7.3959 -7.4019 4.6836 25 1 9.1506 -6.0693 5.6965 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2148 2.3191 0.0049 30 1 1.3307 4.5077 0.0011 31 1 3.7859 4.6526 0.0024 32 1 5.1472 2.6086 0.0011 33 1 5.3018 -0.4718 -1.7827 34 1 4.4261 -1.8138 -1.0079 35 1 3.5288 -0.5669 -1.9068 36 1 4.6929 0.1761 2.0600 37 1 8.6993 -1.8785 1.0550 38 1 8.9119 -1.8830 2.8222 39 1 9.3286 -3.3293 1.8725 40 1 9.2885 -6.1131 2.6119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113688296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:11 Heat of formation + Delta-G solvation = -101.011279 kcal Electronic energy + Delta-G solvation = -22507.556678 eV Core-core repulsion = 19059.613356 eV Total energy + Delta-G solvation = -3447.943322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61908 -41.05685 -38.57131 -37.96611 -35.80562 -35.30283 -31.91465 -31.33265 -30.90213 -29.19788 -28.14599 -27.46243 -25.23225 -23.62274 -22.96894 -21.90013 -20.28976 -18.94318 -18.66015 -18.51944 -17.20837 -17.07676 -16.88694 -16.66174 -16.53394 -16.12516 -15.46543 -15.04316 -14.84129 -14.74823 -14.37553 -14.10222 -13.84878 -13.64799 -13.41906 -13.12844 -13.01601 -12.88286 -12.82420 -12.75140 -12.49748 -12.38171 -12.12764 -12.02170 -11.90229 -11.53739 -11.09176 -10.87904 -10.59196 -10.38416 -9.85859 -9.14884 -8.28494 -6.45546 -0.15868 0.30569 0.46122 1.40744 1.42121 1.56236 2.03693 2.20297 2.33782 2.48350 2.74473 3.01602 3.54673 3.87017 3.92097 4.05190 4.25595 4.29062 4.39889 4.41480 4.44440 4.49919 4.55351 4.62496 4.70759 4.74248 4.79030 4.83523 4.92808 4.98380 5.11499 5.18772 5.30338 5.34765 5.46235 5.50495 5.57005 5.64857 5.81792 5.94114 6.12727 6.42356 6.60215 7.02742 7.27727 8.79706 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.003316 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.072768 B = 8442.846414 C = 8822.442893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.132 3.868 4 C -0.210 4.210 5 C -0.068 4.068 6 C -0.156 4.156 7 C -0.067 4.067 8 C -0.129 4.129 9 C 0.065 3.935 10 C -0.115 4.115 11 C -0.221 4.221 12 C 0.480 3.520 13 O -0.545 6.545 14 O -0.361 6.361 15 C 0.214 3.786 16 H 0.006 0.994 17 C -0.141 4.141 18 C -0.550 4.550 19 H 0.064 0.936 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.985 3.015 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.269 1.269 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.023 0.977 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.250 18.886 -5.926 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.085 4.085 6 C -0.174 4.174 7 C -0.085 4.085 8 C -0.130 4.130 9 C 0.064 3.936 10 C -0.171 4.171 11 C -0.240 4.240 12 C 0.331 3.669 13 O -0.440 6.440 14 O -0.277 6.277 15 C 0.160 3.840 16 H 0.024 0.976 17 C -0.199 4.199 18 C -0.587 4.587 19 H 0.082 0.918 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.194 1.194 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.165 0.835 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.933 18.373 -6.251 25.756 hybrid contribution 0.242 -0.970 0.491 1.114 sum -16.690 17.403 -5.759 24.791 Atomic orbital electron populations 1.23373 0.76139 1.05392 1.02718 1.86078 1.23759 1.27179 1.88134 1.19304 0.90841 0.85474 0.95772 1.21489 1.01285 0.91515 1.08505 1.21495 0.94781 0.97803 0.94471 1.21321 0.94224 0.98705 1.03125 1.21325 1.00784 0.90061 0.96350 1.18271 0.90241 0.92817 1.11640 1.21152 0.87523 0.90944 0.94020 1.21099 1.02295 0.99396 0.94293 1.21142 1.02654 0.99327 1.00866 1.20582 0.80584 0.83607 0.82138 1.90759 1.61105 1.60655 1.31497 1.86189 1.57747 1.48832 1.34975 1.19913 0.85166 0.81664 0.97283 0.97647 1.21994 0.99264 1.00725 0.97940 1.21357 1.25130 1.09640 1.02598 0.91773 1.25867 0.93879 0.97969 1.00722 1.70029 1.25182 1.26344 1.33916 0.85111 0.78577 0.77708 0.77845 1.18865 1.19927 1.19439 0.91232 0.90801 0.87293 0.82697 0.82287 0.82833 0.84528 0.89853 0.91546 0.90511 0.83529 0.95822 0.93766 0.90102 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.04 9.95 -89.98 -0.90 -8.94 16 3 C 0.13 2.98 6.71 22.89 0.15 3.13 16 4 C -0.21 -3.26 9.03 22.33 0.20 -3.06 16 5 C -0.07 -0.86 10.03 22.33 0.22 -0.64 16 6 C -0.16 -2.29 10.02 22.23 0.22 -2.07 16 7 C -0.07 -1.37 9.79 22.57 0.22 -1.15 16 8 C -0.13 -3.27 5.26 -20.06 -0.11 -3.38 16 9 C 0.06 2.05 5.00 -18.32 -0.09 1.96 16 10 C -0.12 -3.71 8.45 71.24 0.60 -3.11 16 11 C -0.22 -8.16 9.63 22.42 0.22 -7.95 16 12 C 0.48 22.68 7.53 68.69 0.52 23.19 16 13 O -0.54 -27.68 12.39 19.37 0.24 -27.44 16 14 O -0.36 -19.25 9.73 -58.56 -0.57 -19.82 16 15 C 0.21 12.57 2.51 29.85 0.07 12.64 16 16 H 0.01 0.37 7.11 -2.38 -0.02 0.36 16 17 C -0.14 -7.74 9.31 71.98 0.67 -7.07 16 18 C -0.55 -33.02 8.89 25.60 0.23 -32.79 16 19 H 0.06 3.80 7.81 -2.91 -0.02 3.78 16 20 C 0.02 0.87 5.30 84.66 0.45 1.32 16 21 N -0.92 -54.48 11.32 21.45 0.24 -54.24 16 22 Si 0.98 44.42 29.54 68.60 2.03 46.44 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.16 1.54 6.30 -2.91 -0.02 1.52 16 30 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.08 2.66 8.03 -2.39 -0.02 2.65 16 34 H 0.07 2.57 6.16 -2.39 -0.01 2.55 16 35 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 36 H 0.15 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 4.68 6.07 -2.39 -0.01 4.67 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -73.86 341.37 6.77 -67.09 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.04 Total: 14.53 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 4.69 Total: -17.62 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.24 Total: -54.24 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.23 Total: -56.21 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.86 6.77 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.923 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds