Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00403 * 2 1 4 4 C 1.53000 * 109.47128 * 124.99717 * 3 2 1 5 5 C 1.52993 * 109.46966 * 180.02562 * 4 3 2 6 6 O 1.45203 * 109.47136 * 179.97438 * 5 4 3 7 7 C 1.34234 * 117.00018 * 179.97438 * 6 5 4 8 8 O 1.20820 * 119.99683 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46735 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.93408 * 89.99836 * 10 9 7 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 1.07998 * 120.00553 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99734 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99734 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46809 * 4.99922 * 3 2 1 29 29 H 1.08992 * 109.47112 * 244.99695 * 3 2 1 30 30 H 1.08998 * 109.47108 * 60.00388 * 4 3 2 31 31 H 1.09005 * 109.47364 * 300.00139 * 4 3 2 32 32 H 1.09005 * 109.47319 * 60.00350 * 5 4 3 33 33 H 1.09001 * 109.47222 * 299.99696 * 5 4 3 34 34 H 1.08986 * 109.47293 * 60.00092 * 9 7 6 35 35 H 1.09005 * 109.47046 * 299.99775 * 9 7 6 36 36 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 40 40 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7996 2.6582 1.1820 6 8 4.7212 2.6850 2.3038 7 6 5.4739 3.7871 2.4479 8 8 5.3660 4.6992 1.6629 9 6 6.4536 3.8865 3.5887 10 6 7.1664 5.2126 3.5244 11 6 6.6424 6.3104 4.1826 12 6 7.2936 7.5270 4.1260 13 6 8.4755 7.6474 3.4069 14 8 9.1182 8.8418 3.3498 15 6 8.6205 9.8415 4.1053 16 1 7.7023 9.6970 4.6552 17 6 9.2873 11.0551 4.1761 18 7 8.8018 12.0303 4.9136 19 14 10.8758 11.3049 3.2254 20 1 10.5655 11.8369 1.8742 21 1 11.7404 12.2698 3.9509 22 1 11.5842 10.0062 3.0953 23 6 8.9959 6.5449 2.7418 24 6 8.3430 5.3297 2.8069 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4025 -0.9313 30 1 3.7399 0.5065 1.0921 31 1 2.4772 1.2356 2.1131 32 1 3.0944 3.4846 1.2718 33 1 4.3575 2.7561 0.2507 34 1 7.1812 3.0785 3.5142 35 1 5.9185 3.8075 4.5351 36 1 5.7234 6.2160 4.7420 37 1 6.8841 8.3837 4.6405 38 1 9.2686 12.8792 4.9634 39 1 9.9125 6.6365 2.1781 40 1 8.7494 4.4707 2.2937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117995504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = -82.592294 kcal Electronic energy + Delta-G solvation = -21342.903238 eV Core-core repulsion = 17895.758623 eV Total energy + Delta-G solvation = -3447.144615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45200 -39.14106 -37.29437 -36.55650 -35.80183 -32.58956 -32.19603 -31.53064 -30.26890 -27.52925 -26.24890 -24.92996 -22.24125 -22.08900 -21.52231 -20.29964 -20.01001 -17.91648 -17.57108 -17.30439 -16.82537 -16.26665 -15.71815 -15.03708 -14.81284 -14.51207 -14.09753 -14.01879 -13.75583 -13.61935 -13.31008 -13.03656 -12.71971 -12.64001 -12.34555 -12.21478 -11.84149 -11.73404 -11.38516 -11.33977 -11.31178 -10.98026 -10.80296 -10.68556 -10.59698 -10.30530 -10.15978 -9.76152 -9.39994 -8.87702 -8.26614 -7.35454 -6.42664 -4.09136 1.83496 2.03487 2.13522 2.35397 2.82023 3.22754 3.25538 3.39938 4.23138 4.31110 4.47552 4.50871 4.72245 4.80515 4.85056 4.92824 4.97262 5.08647 5.10312 5.14161 5.19223 5.34423 5.41197 5.50555 5.57114 5.64420 5.69033 5.72659 5.81220 6.11252 6.20519 6.30076 6.34254 6.44469 6.55912 6.76932 6.99869 7.18191 7.27588 7.58918 7.78898 7.89489 8.02533 8.92351 9.54361 10.64797 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038328 B = 0.002306 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.359683 B =12140.623730 C =12287.260206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.114 4.114 5 C 0.065 3.935 6 O -0.365 6.365 7 C 0.455 3.545 8 O -0.492 6.492 9 C -0.052 4.052 10 C -0.175 4.175 11 C -0.055 4.055 12 C -0.220 4.220 13 C 0.165 3.835 14 O -0.216 6.216 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.192 4.192 24 C -0.059 4.059 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.280 0.720 39 H 0.118 0.882 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -22.482 -5.926 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.151 4.151 5 C -0.009 4.009 6 O -0.283 6.283 7 C 0.297 3.703 8 O -0.377 6.377 9 C -0.089 4.089 10 C -0.176 4.176 11 C -0.073 4.073 12 C -0.239 4.239 13 C 0.112 3.888 14 O -0.120 6.120 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.211 4.211 24 C -0.077 4.077 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.269 -21.876 -6.234 24.957 hybrid contribution 0.374 0.397 -0.430 0.694 sum -9.895 -21.479 -6.664 24.569 Atomic orbital electron populations 1.23893 0.95976 1.01982 1.01187 1.22897 0.96011 0.98286 0.99844 1.20678 0.98072 0.95967 0.98377 1.21498 0.97876 0.96374 0.99396 1.23019 0.91184 0.98760 0.87975 1.86491 1.50264 1.42371 1.49169 1.24163 0.80017 0.79473 0.86667 1.90705 1.65140 1.38593 1.43307 1.20109 0.95621 0.98048 0.95158 1.18715 0.98341 0.93696 1.06819 1.20596 0.97660 0.91980 0.97086 1.21230 0.97867 0.98641 1.06196 1.19147 0.90940 0.85717 0.92956 1.83569 1.51483 1.16703 1.60281 1.20786 1.09825 0.90161 1.25733 0.87567 1.24480 0.99028 0.94117 0.96397 1.69648 1.39988 1.04145 1.37808 0.86168 0.82115 0.78870 0.79680 1.19867 1.20787 1.18330 1.20156 1.02779 0.91356 1.06798 1.20427 0.94291 0.96222 0.96763 0.88440 0.88510 0.87223 0.91054 0.90525 0.90624 0.90646 0.91311 0.91298 0.87684 0.87665 0.87323 0.84817 0.91025 0.86396 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 14.32 29.02 0.42 -0.72 16 2 C -0.15 -0.94 9.52 -36.02 -0.34 -1.28 16 3 C -0.09 -0.60 5.66 -27.88 -0.16 -0.76 16 4 C -0.11 -0.84 5.58 -26.73 -0.15 -0.98 16 5 C 0.06 0.65 5.47 37.15 0.20 0.85 16 6 O -0.36 -4.38 10.22 -39.27 -0.40 -4.78 16 7 C 0.45 6.42 7.95 36.01 0.29 6.71 16 8 O -0.49 -8.84 15.78 -18.75 -0.30 -9.14 16 9 C -0.05 -0.64 5.94 -29.03 -0.17 -0.81 16 10 C -0.17 -2.91 4.38 -104.57 -0.46 -3.37 16 11 C -0.05 -1.01 9.69 -39.61 -0.38 -1.40 16 12 C -0.22 -4.84 9.17 -39.40 -0.36 -5.20 16 13 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 14 O -0.22 -5.76 8.59 0.05 0.00 -5.76 16 15 C -0.39 -11.06 9.95 30.89 0.31 -10.75 16 16 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 17 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 18 N -0.88 -25.43 13.96 55.48 0.77 -24.66 16 19 Si 0.91 21.79 28.62 -169.99 -4.86 16.92 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.19 -3.87 9.99 -39.39 -0.39 -4.27 16 24 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 25 H 0.10 0.48 8.06 -52.49 -0.42 0.05 16 26 H 0.10 0.54 7.84 -52.48 -0.41 0.13 16 27 H 0.11 0.58 8.06 -52.48 -0.42 0.16 16 28 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 34 H 0.11 1.03 8.08 -51.94 -0.42 0.61 16 35 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 38 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -31.78 350.10 -7.06 -38.83 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.60 Total: 1.38 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.95 Total: -18.08 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.77 Total: -24.66 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.70 Total: -19.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.78 -7.06 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117995504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.759 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds