Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00403 * 2 1 4 4 C 1.53000 * 109.47128 * 124.99717 * 3 2 1 5 5 C 1.52993 * 109.46966 * 180.02562 * 4 3 2 6 6 O 1.45203 * 109.47136 * 179.97438 * 5 4 3 7 7 C 1.34234 * 117.00018 * 179.97438 * 6 5 4 8 8 O 1.20820 * 119.99683 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46735 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.93408 * 89.99836 * 10 9 7 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 1.07998 * 120.00553 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99734 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99734 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46809 * 4.99922 * 3 2 1 29 29 H 1.08992 * 109.47112 * 244.99695 * 3 2 1 30 30 H 1.08998 * 109.47108 * 60.00388 * 4 3 2 31 31 H 1.09005 * 109.47364 * 300.00139 * 4 3 2 32 32 H 1.09005 * 109.47319 * 60.00350 * 5 4 3 33 33 H 1.09001 * 109.47222 * 299.99696 * 5 4 3 34 34 H 1.08986 * 109.47293 * 60.00092 * 9 7 6 35 35 H 1.09005 * 109.47046 * 299.99775 * 9 7 6 36 36 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 40 40 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7996 2.6582 1.1820 6 8 4.7212 2.6850 2.3038 7 6 5.4739 3.7871 2.4479 8 8 5.3660 4.6992 1.6629 9 6 6.4536 3.8865 3.5887 10 6 7.1664 5.2126 3.5244 11 6 6.6424 6.3104 4.1826 12 6 7.2936 7.5270 4.1260 13 6 8.4755 7.6474 3.4069 14 8 9.1182 8.8418 3.3498 15 6 8.6205 9.8415 4.1053 16 1 7.7023 9.6970 4.6552 17 6 9.2873 11.0551 4.1761 18 7 8.8018 12.0303 4.9136 19 14 10.8758 11.3049 3.2254 20 1 10.5655 11.8369 1.8742 21 1 11.7404 12.2698 3.9509 22 1 11.5842 10.0062 3.0953 23 6 8.9959 6.5449 2.7418 24 6 8.3430 5.3297 2.8069 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4025 -0.9313 30 1 3.7399 0.5065 1.0921 31 1 2.4772 1.2356 2.1131 32 1 3.0944 3.4846 1.2718 33 1 4.3575 2.7561 0.2507 34 1 7.1812 3.0785 3.5142 35 1 5.9185 3.8075 4.5351 36 1 5.7234 6.2160 4.7420 37 1 6.8841 8.3837 4.6405 38 1 9.2686 12.8792 4.9634 39 1 9.9125 6.6365 2.1781 40 1 8.7494 4.4707 2.2937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117995504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -99.620801 kcal Electronic energy + Delta-G solvation = -21343.641649 eV Core-core repulsion = 17895.758623 eV Total energy + Delta-G solvation = -3447.883026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58516 -40.79091 -38.66972 -37.71213 -36.55451 -34.54214 -33.29613 -32.52292 -31.84063 -28.86165 -27.36913 -26.54469 -23.75272 -23.13847 -22.52696 -21.50716 -20.62807 -19.83911 -19.12932 -18.62111 -17.76185 -17.32149 -16.71749 -16.30959 -16.26279 -15.79888 -15.60963 -15.40156 -15.17602 -14.72426 -14.41730 -14.31872 -14.10284 -13.94362 -13.84573 -13.15475 -13.05517 -12.84828 -12.55707 -12.53849 -12.45116 -12.34414 -12.06005 -11.94598 -11.82939 -11.47387 -11.41907 -11.29928 -10.91342 -10.22566 -9.82053 -9.04720 -8.51377 -6.24231 0.51929 0.55912 1.26924 1.30521 1.34518 1.38209 1.50920 1.81672 2.27144 2.76097 3.03444 3.15027 3.69272 3.80012 3.89403 4.00185 4.03816 4.13695 4.19818 4.28882 4.40232 4.42030 4.53782 4.56221 4.61004 4.67704 4.77926 4.82411 4.94929 5.02950 5.13616 5.21353 5.24020 5.34309 5.49895 5.53717 5.68912 5.77205 5.77310 5.89118 5.89656 6.21693 6.82546 6.82857 7.56300 8.60141 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038328 B = 0.002306 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.359683 B =12140.623730 C =12287.260206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.093 4.093 4 C -0.104 4.104 5 C 0.059 3.941 6 O -0.357 6.357 7 C 0.461 3.539 8 O -0.539 6.539 9 C -0.051 4.051 10 C -0.151 4.151 11 C -0.061 4.061 12 C -0.240 4.240 13 C 0.122 3.878 14 O -0.244 6.244 15 C -0.401 4.401 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.922 5.922 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.194 4.194 24 C -0.055 4.055 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.285 0.715 39 H 0.130 0.870 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 -26.300 -6.732 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.177 4.177 3 C -0.130 4.130 4 C -0.141 4.141 5 C -0.014 4.014 6 O -0.274 6.274 7 C 0.305 3.695 8 O -0.428 6.428 9 C -0.087 4.087 10 C -0.151 4.151 11 C -0.079 4.079 12 C -0.259 4.259 13 C 0.073 3.927 14 O -0.152 6.152 15 C -0.477 4.477 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.213 4.213 24 C -0.072 4.072 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.206 -25.761 -7.033 28.588 hybrid contribution 0.116 1.197 -0.204 1.220 sum -10.090 -24.564 -7.236 27.524 Atomic orbital electron populations 1.24048 0.96120 1.02518 1.00773 1.22977 0.96160 0.98414 1.00195 1.20668 0.97922 0.96233 0.98172 1.21450 0.97831 0.94993 0.99836 1.23233 0.90833 1.00083 0.87272 1.86481 1.50069 1.41162 1.49692 1.24356 0.79814 0.79103 0.86178 1.90717 1.66708 1.40214 1.45180 1.20257 0.96243 0.96282 0.95949 1.19257 0.97504 0.95046 1.03324 1.20946 0.98350 0.91122 0.97460 1.21259 0.98285 0.99620 1.06736 1.19721 0.92030 0.85904 0.95059 1.83509 1.52597 1.17532 1.61546 1.20716 1.09390 0.91406 1.26187 0.90214 1.25308 1.02406 0.93701 0.97511 1.69731 1.41817 1.04858 1.39863 0.85194 0.78111 0.78753 0.78506 1.19250 1.19017 1.18591 1.20517 1.03412 0.91372 1.05999 1.20982 0.93991 0.96306 0.95964 0.87481 0.88553 0.86300 0.91299 0.90187 0.89704 0.90499 0.92055 0.91457 0.83604 0.84532 0.84649 0.87401 0.90534 0.85179 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 14.32 67.79 0.97 -1.01 16 2 C -0.16 -1.63 9.52 25.65 0.24 -1.38 16 3 C -0.09 -1.01 5.66 29.85 0.17 -0.84 16 4 C -0.10 -1.26 5.58 30.59 0.17 -1.08 16 5 C 0.06 1.06 5.47 71.98 0.39 1.45 16 6 O -0.36 -7.30 10.22 -51.45 -0.53 -7.83 16 7 C 0.46 11.33 7.95 71.24 0.57 11.90 16 8 O -0.54 -18.19 15.78 21.98 0.35 -17.84 16 9 C -0.05 -0.98 5.94 29.10 0.17 -0.81 16 10 C -0.15 -4.48 4.38 -19.83 -0.09 -4.57 16 11 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 12 C -0.24 -10.93 9.17 22.39 0.21 -10.73 16 13 C 0.12 5.90 6.65 22.58 0.15 6.05 16 14 O -0.24 -13.65 8.59 -22.72 -0.20 -13.85 16 15 C -0.40 -24.18 9.95 67.92 0.68 -23.51 16 16 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 17 C 0.01 0.54 5.49 84.83 0.47 1.01 16 18 N -0.92 -55.84 13.96 21.61 0.30 -55.54 16 19 Si 0.97 46.20 28.62 68.60 1.96 48.16 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 23 C -0.19 -7.61 9.99 22.39 0.22 -7.39 16 24 C -0.05 -1.69 9.69 22.25 0.22 -1.48 16 25 H 0.11 0.84 8.06 -2.91 -0.02 0.82 16 26 H 0.10 0.94 7.84 -2.91 -0.02 0.92 16 27 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 28 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 33 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.15 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.14 1.95 8.08 -2.38 -0.02 1.94 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 38 H 0.29 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -73.45 350.10 7.67 -65.79 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.02 Total: 15.43 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 4.75 Total: -34.32 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.30 Total: -55.54 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.37 Total: -39.52 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.96 Total: 48.16 kcal Total: -73.45 7.67 -65.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117995504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.833 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds