Wall clock time and date at job start Tue Mar 31 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99988 * 2 1 4 4 H 1.48508 * 109.47132 * 269.99544 * 3 2 1 5 5 H 1.48495 * 109.47675 * 29.99668 * 3 2 1 6 6 H 1.48505 * 109.47329 * 149.99795 * 3 2 1 7 7 C 1.37879 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47545 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47205 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00030 * 180.02562 * 12 11 10 14 14 O 1.21601 * 119.99950 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00247 * 179.97438 * 13 12 11 16 16 C 1.40150 * 120.00213 * 185.30864 * 15 13 12 17 17 C 1.38855 * 120.18721 * 33.13252 * 16 15 13 18 18 C 1.37870 * 120.27351 * 180.19966 * 17 16 15 19 19 C 1.39295 * 120.33941 * 0.02562 * 18 17 16 20 20 C 1.38973 * 118.96936 * 359.61989 * 19 18 17 21 21 C 1.37628 * 120.84306 * 0.56152 * 20 19 18 22 22 C 1.51661 * 106.99058 * 180.56186 * 20 19 18 23 23 C 1.54706 * 101.94774 * 15.71894 * 22 20 19 24 24 O 1.36228 * 129.79015 * 179.56942 * 19 18 17 25 25 H 0.97000 * 120.00203 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47625 * 60.00286 * 9 7 2 27 27 H 1.09000 * 109.47020 * 300.00181 * 9 7 2 28 28 H 1.09004 * 109.46967 * 59.99590 * 10 9 7 29 29 H 1.08999 * 109.46496 * 300.00273 * 10 9 7 30 30 H 1.08991 * 109.47263 * 59.99441 * 11 10 9 31 31 H 1.09000 * 109.46759 * 299.99681 * 11 10 9 32 32 H 0.96994 * 120.00112 * 359.97438 * 12 11 10 33 33 H 0.96995 * 119.99759 * 5.30870 * 15 13 12 34 34 H 1.07999 * 119.86600 * 0.17405 * 17 16 15 35 35 H 1.08005 * 119.83210 * 179.97438 * 18 17 16 36 36 H 1.07993 * 120.01275 * 179.64685 * 21 20 19 37 37 H 1.08994 * 110.93982 * 257.54453 * 22 20 19 38 38 H 1.08998 * 110.94305 * 133.89058 * 22 20 19 39 39 H 1.09000 * 110.74936 * 92.92775 * 23 22 20 40 40 H 1.09001 * 110.74373 * 216.08554 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 7 6.0397 -4.0179 0.0015 13 6 7.3648 -4.2642 0.0029 14 8 8.1550 -3.3400 0.0043 15 7 7.8140 -5.5349 0.0027 16 6 9.1869 -5.7929 0.1165 17 6 9.9945 -4.9545 0.8735 18 6 11.3459 -5.2042 0.9832 19 6 11.9140 -6.2989 0.3358 20 6 11.0965 -7.1365 -0.4135 21 6 9.7477 -6.8881 -0.5282 22 6 11.9819 -8.2305 -0.9786 23 6 13.2545 -8.0934 -0.1097 24 8 13.2099 -6.7178 0.3055 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8751 -0.6805 -0.8888 28 1 3.6584 -3.1503 -0.8892 29 1 3.6577 -3.1506 0.8907 30 1 5.9141 -2.1232 0.8926 31 1 5.9155 -2.1226 -0.8873 32 1 5.4094 -4.7551 0.0008 33 1 7.1872 -6.2709 -0.0761 34 1 9.5622 -4.1031 1.3781 35 1 11.9675 -4.5472 1.5736 36 1 9.1258 -7.5446 -1.1186 37 1 12.2059 -8.0465 -2.0293 38 1 11.5232 -9.2104 -0.8459 39 1 13.2069 -8.7587 0.7525 40 1 14.1486 -8.2927 -0.7004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171369926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:28 Heat of formation + Delta-G solvation = -40.587215 kcal Electronic energy + Delta-G solvation = -21550.878719 eV Core-core repulsion = 18137.848332 eV Total energy + Delta-G solvation = -3413.030387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39726 -40.30392 -37.77508 -35.59785 -34.43847 -33.32734 -32.93508 -31.47102 -29.66352 -28.99005 -27.00369 -23.84383 -23.40621 -22.33652 -22.05665 -20.86633 -20.21736 -18.45550 -17.76896 -17.48489 -16.79859 -16.64961 -16.22495 -15.61949 -15.16880 -14.48043 -14.36092 -14.23819 -13.89752 -13.78200 -13.52380 -13.25492 -13.01253 -12.79453 -12.69369 -12.13728 -12.10132 -11.94394 -11.53563 -11.11730 -11.04968 -10.90997 -10.36803 -10.08140 -9.96051 -9.86137 -9.71290 -9.25038 -9.11923 -8.94795 -8.57048 -7.83480 -6.07902 -4.06817 1.07312 1.08868 2.52060 2.98248 3.08867 3.30597 3.38320 3.42451 3.57505 4.04313 4.12617 4.27884 4.43182 4.55856 4.64172 4.90940 5.03305 5.12530 5.25833 5.26198 5.32999 5.44235 5.46612 5.63112 5.64053 5.71184 5.98238 6.07801 6.10950 6.23236 6.31812 6.41856 6.55289 6.61981 6.75554 6.86658 6.97957 7.20548 7.33907 7.73620 7.88710 8.47026 8.49958 8.95655 9.54239 11.05238 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.051870 B = 0.002235 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.682366 B =12526.127660 C =12916.632584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.131 3.869 12 N -0.735 5.735 13 C 0.700 3.300 14 O -0.576 6.576 15 N -0.688 5.688 16 C 0.148 3.852 17 C -0.085 4.085 18 C -0.115 4.115 19 C 0.082 3.918 20 C -0.157 4.157 21 C -0.101 4.101 22 C -0.108 4.108 23 C 0.052 3.948 24 O -0.307 6.307 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.406 0.594 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.823 -19.547 -0.144 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.389 5.389 13 C 0.400 3.600 14 O -0.452 6.452 15 N -0.336 5.336 16 C 0.053 3.947 17 C -0.105 4.105 18 C -0.134 4.134 19 C 0.037 3.963 20 C -0.159 4.159 21 C -0.122 4.122 22 C -0.145 4.145 23 C -0.023 4.023 24 O -0.221 6.221 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.241 0.759 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 24.502 -18.388 -0.077 30.634 hybrid contribution -0.452 0.022 -0.234 0.509 sum 24.050 -18.365 -0.311 30.262 Atomic orbital electron populations 1.69911 1.06316 1.26979 1.50939 1.25034 0.94766 0.99273 0.94454 0.86771 0.80406 0.83485 0.78608 1.20236 1.21367 1.18861 1.21085 0.89286 0.94504 1.51174 0.91018 1.19502 0.97277 0.91379 0.96743 1.21716 0.90497 1.01127 1.01781 1.21588 0.95865 0.79621 1.02095 1.45351 1.04433 1.10505 1.78599 1.15980 0.83348 0.82608 0.78073 1.90945 1.54727 1.42791 1.56787 1.42594 1.05956 1.07481 1.77577 1.17230 0.82981 0.96484 0.98050 1.20970 0.92229 0.99881 0.97426 1.20155 0.94332 0.97430 1.01520 1.19543 0.83462 0.96307 0.96997 1.20431 0.93980 0.99674 1.01803 1.19864 0.93243 0.98821 1.00233 1.21772 0.93984 0.98194 1.00576 1.23793 0.99059 0.81402 0.98068 1.86835 1.22827 1.27392 1.85026 0.92685 0.96233 0.96686 0.92086 0.92044 0.91672 0.91726 0.76899 0.75875 0.83559 0.85083 0.85476 0.89122 0.89084 0.90640 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 11 C 0.13 2.10 5.67 -4.05 -0.02 2.08 16 12 N -0.73 -9.53 5.56 -65.23 -0.36 -9.89 16 13 C 0.70 9.85 8.31 -86.92 -0.72 9.13 16 14 O -0.58 -10.36 14.03 5.28 0.07 -10.28 16 15 N -0.69 -7.26 5.36 -14.16 -0.08 -7.34 16 16 C 0.15 1.69 6.29 -83.58 -0.53 1.16 16 17 C -0.08 -1.06 8.64 -39.49 -0.34 -1.40 16 18 C -0.12 -1.33 10.06 -39.32 -0.40 -1.72 16 19 C 0.08 0.92 7.04 -38.92 -0.27 0.65 16 20 C -0.16 -1.52 6.27 -104.10 -0.65 -2.17 16 21 C -0.10 -0.96 9.95 -39.55 -0.39 -1.35 16 22 C -0.11 -0.68 7.11 -26.51 -0.19 -0.87 16 23 C 0.05 0.32 8.01 38.06 0.30 0.63 16 24 O -0.31 -3.22 11.10 -20.47 -0.23 -3.44 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 3.95 8.49 -40.82 -0.35 3.60 16 33 H 0.41 2.83 8.84 -40.82 -0.36 2.47 16 34 H 0.15 2.03 6.41 -52.49 -0.34 1.70 16 35 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -34.35 336.08 -8.94 -43.29 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.62 Total: 1.93 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.89 Total: -9.49 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.33 Total: -44.02 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.15 Total: -13.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.35 -8.94 -43.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171369926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.702 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds