Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99988 * 2 1 4 4 H 1.48508 * 109.47132 * 269.99544 * 3 2 1 5 5 H 1.48495 * 109.47675 * 29.99668 * 3 2 1 6 6 H 1.48505 * 109.47329 * 149.99795 * 3 2 1 7 7 C 1.37879 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47545 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47205 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00030 * 180.02562 * 12 11 10 14 14 O 1.21601 * 119.99950 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00247 * 179.97438 * 13 12 11 16 16 C 1.40150 * 120.00213 * 185.30864 * 15 13 12 17 17 C 1.38855 * 120.18721 * 33.13252 * 16 15 13 18 18 C 1.37870 * 120.27351 * 180.19966 * 17 16 15 19 19 C 1.39295 * 120.33941 * 0.02562 * 18 17 16 20 20 C 1.38973 * 118.96936 * 359.61989 * 19 18 17 21 21 C 1.37628 * 120.84306 * 0.56152 * 20 19 18 22 22 C 1.51661 * 106.99058 * 180.56186 * 20 19 18 23 23 C 1.54706 * 101.94774 * 15.71894 * 22 20 19 24 24 O 1.36228 * 129.79015 * 179.56942 * 19 18 17 25 25 H 0.97000 * 120.00203 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47625 * 60.00286 * 9 7 2 27 27 H 1.09000 * 109.47020 * 300.00181 * 9 7 2 28 28 H 1.09004 * 109.46967 * 59.99590 * 10 9 7 29 29 H 1.08999 * 109.46496 * 300.00273 * 10 9 7 30 30 H 1.08991 * 109.47263 * 59.99441 * 11 10 9 31 31 H 1.09000 * 109.46759 * 299.99681 * 11 10 9 32 32 H 0.96994 * 120.00112 * 359.97438 * 12 11 10 33 33 H 0.96995 * 119.99759 * 5.30870 * 15 13 12 34 34 H 1.07999 * 119.86600 * 0.17405 * 17 16 15 35 35 H 1.08005 * 119.83210 * 179.97438 * 18 17 16 36 36 H 1.07993 * 120.01275 * 179.64685 * 21 20 19 37 37 H 1.08994 * 110.93982 * 257.54453 * 22 20 19 38 38 H 1.08998 * 110.94305 * 133.89058 * 22 20 19 39 39 H 1.09000 * 110.74936 * 92.92775 * 23 22 20 40 40 H 1.09001 * 110.74373 * 216.08554 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 7 6.0397 -4.0179 0.0015 13 6 7.3648 -4.2642 0.0029 14 8 8.1550 -3.3400 0.0043 15 7 7.8140 -5.5349 0.0027 16 6 9.1869 -5.7929 0.1165 17 6 9.9945 -4.9545 0.8735 18 6 11.3459 -5.2042 0.9832 19 6 11.9140 -6.2989 0.3358 20 6 11.0965 -7.1365 -0.4135 21 6 9.7477 -6.8881 -0.5282 22 6 11.9819 -8.2305 -0.9786 23 6 13.2545 -8.0934 -0.1097 24 8 13.2099 -6.7178 0.3055 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8751 -0.6805 -0.8888 28 1 3.6584 -3.1503 -0.8892 29 1 3.6577 -3.1506 0.8907 30 1 5.9141 -2.1232 0.8926 31 1 5.9155 -2.1226 -0.8873 32 1 5.4094 -4.7551 0.0008 33 1 7.1872 -6.2709 -0.0761 34 1 9.5622 -4.1031 1.3781 35 1 11.9675 -4.5472 1.5736 36 1 9.1258 -7.5446 -1.1186 37 1 12.2059 -8.0465 -2.0293 38 1 11.5232 -9.2104 -0.8459 39 1 13.2069 -8.7587 0.7525 40 1 14.1486 -8.2927 -0.7004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171369926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = -64.567800 kcal Electronic energy + Delta-G solvation = -21551.918595 eV Core-core repulsion = 18137.848332 eV Total energy + Delta-G solvation = -3414.070263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.15729 -41.29030 -38.66762 -36.96743 -35.45202 -35.09368 -33.62316 -33.21610 -30.42756 -29.90614 -28.57262 -24.95113 -24.44779 -23.22056 -22.99476 -22.24688 -21.46366 -19.52880 -18.98390 -18.48830 -18.23287 -17.43811 -16.98040 -16.72984 -16.50371 -16.04392 -15.68587 -15.24750 -15.04369 -14.76756 -14.62532 -14.21229 -14.01225 -13.80461 -13.77998 -13.62703 -13.44455 -12.73760 -12.69669 -12.60491 -12.21759 -11.93172 -11.82269 -11.75647 -11.58001 -11.34283 -11.30710 -10.82908 -10.75331 -10.12315 -9.88156 -8.65902 -8.28685 -6.32289 0.23571 0.29210 1.37623 1.39428 1.50917 1.52789 1.98539 2.36996 2.37673 2.73873 3.07196 3.15496 3.48719 3.71266 3.93526 4.08849 4.19552 4.22366 4.23325 4.29573 4.51811 4.52172 4.66664 4.75750 4.86667 4.90791 4.91182 4.94027 5.04870 5.06164 5.25684 5.33776 5.35871 5.43369 5.51412 5.57646 5.65938 5.73295 5.94779 6.22012 6.28267 6.75850 6.96852 7.32476 7.44394 8.87555 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.051870 B = 0.002235 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.682366 B =12526.127660 C =12916.632584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.146 3.854 12 N -0.724 5.724 13 C 0.698 3.302 14 O -0.618 6.618 15 N -0.669 5.669 16 C 0.131 3.869 17 C -0.104 4.104 18 C -0.131 4.131 19 C 0.069 3.931 20 C -0.159 4.159 21 C -0.092 4.092 22 C -0.103 4.103 23 C 0.044 3.956 24 O -0.328 6.328 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.414 0.586 33 H 0.425 0.575 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.159 0.841 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.646 -21.292 -0.968 33.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.021 3.979 12 N -0.379 5.379 13 C 0.399 3.601 14 O -0.498 6.498 15 N -0.319 5.319 16 C 0.036 3.964 17 C -0.125 4.125 18 C -0.150 4.150 19 C 0.024 3.976 20 C -0.160 4.160 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.031 4.031 24 O -0.243 6.243 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.264 0.736 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 26.324 -20.213 -0.902 33.202 hybrid contribution -0.983 0.427 0.023 1.072 sum 25.342 -19.786 -0.879 32.163 Atomic orbital electron populations 1.70057 1.08184 1.28084 1.52751 1.25986 0.95604 1.03434 0.94319 0.85708 0.79541 0.78570 0.79155 1.19298 1.21131 1.17093 1.21465 0.91909 0.93244 1.50104 0.94309 1.19472 0.94042 0.94735 0.96868 1.21476 0.91820 0.98089 1.02334 1.21200 0.94118 0.81111 1.01451 1.45022 1.04566 1.09947 1.78380 1.16081 0.83081 0.83205 0.77764 1.90926 1.55781 1.44451 1.58605 1.42312 1.06201 1.06808 1.76551 1.17401 0.83072 0.97226 0.98704 1.20859 0.92953 1.00005 0.98641 1.20219 0.94232 0.98261 1.02275 1.19726 0.84248 0.96417 0.97238 1.20899 0.94106 1.00113 1.00903 1.20126 0.93610 0.98110 0.99447 1.21890 0.93054 0.98200 1.00822 1.24152 1.00314 0.79523 0.99063 1.86809 1.22494 1.29747 1.85238 0.92555 0.96056 0.96183 0.91529 0.91571 0.92425 0.92453 0.74919 0.73612 0.85759 0.84905 0.82393 0.88065 0.86456 0.89339 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.10 13.96 21.45 0.30 -58.81 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -29.72 9.66 25.60 0.25 -29.47 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.45 5.27 30.59 0.16 -3.29 16 11 C 0.15 4.46 5.67 86.38 0.49 4.95 16 12 N -0.72 -17.65 5.56 -478.55 -2.66 -20.31 16 13 C 0.70 19.04 8.31 179.06 1.49 20.53 16 14 O -0.62 -22.38 14.03 -4.03 -0.06 -22.43 16 15 N -0.67 -13.08 5.36 -316.97 -1.70 -14.78 16 16 C 0.13 2.86 6.29 38.12 0.24 3.10 16 17 C -0.10 -2.68 8.64 22.33 0.19 -2.49 16 18 C -0.13 -3.11 10.06 22.44 0.23 -2.88 16 19 C 0.07 1.50 7.04 22.70 0.16 1.66 16 20 C -0.16 -2.69 6.27 -19.53 -0.12 -2.82 16 21 C -0.09 -1.53 9.95 22.29 0.22 -1.31 16 22 C -0.10 -0.93 7.11 30.74 0.22 -0.71 16 23 C 0.04 0.43 8.01 72.56 0.58 1.01 16 24 O -0.33 -6.49 11.10 -96.16 -1.07 -7.56 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.41 7.29 8.49 -92.71 -0.79 6.50 16 33 H 0.43 4.82 8.84 -92.71 -0.82 4.00 16 34 H 0.12 3.70 6.41 -2.91 -0.02 3.68 16 35 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -76.12 336.08 0.79 -75.33 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.59 Total: 13.94 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.69 Total: -11.54 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.06 Total: -93.90 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.12 Total: -29.99 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -76.12 0.79 -75.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171369926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.757 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds