Wall clock time and date at job start Tue Mar 31 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46707 * 2 1 4 4 O 1.45206 * 109.46929 * 119.99600 * 2 1 3 5 5 C 1.34226 * 117.00074 * 270.00298 * 4 2 1 6 6 O 1.20825 * 120.00352 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99946 * 179.97438 * 5 4 2 8 8 C 1.50695 * 109.47436 * 179.97438 * 7 5 4 9 9 C 1.38300 * 119.93634 * 269.73208 * 8 7 5 10 10 C 1.38103 * 120.07235 * 179.72038 * 9 8 7 11 11 C 1.38881 * 119.92859 * 0.56979 * 10 9 8 12 12 O 1.35743 * 120.07033 * 179.67702 * 11 10 9 13 13 C 1.34829 * 117.00323 * 174.48588 * 12 11 10 14 14 H 1.08000 * 119.99772 * 5.06302 * 13 12 11 15 15 C 1.38655 * 120.00285 * 185.06067 * 13 12 11 16 16 N 1.31556 * 119.99986 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99817 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47223 * 90.00094 * 17 15 13 19 19 H 1.48499 * 109.47046 * 209.99924 * 17 15 13 20 20 H 1.48492 * 109.47326 * 329.99691 * 17 15 13 21 21 C 1.38884 * 119.86119 * 359.70391 * 11 10 9 22 22 C 1.38100 * 119.93123 * 0.02562 * 21 11 10 23 23 C 1.52995 * 109.47126 * 239.99834 * 2 1 3 24 24 C 1.52997 * 117.49652 * 248.61908 * 23 2 1 25 25 C 1.52999 * 60.00281 * 252.51465 * 24 23 2 26 26 H 1.09005 * 109.46817 * 60.00169 * 1 2 3 27 27 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47310 * 300.00664 * 1 2 3 29 29 H 1.08999 * 109.47119 * 60.00078 * 7 5 4 30 30 H 1.09004 * 109.47334 * 300.00224 * 7 5 4 31 31 H 1.08004 * 119.96372 * 359.97187 * 9 8 7 32 32 H 1.07998 * 120.03412 * 180.26808 * 10 9 8 33 33 H 0.97002 * 119.99992 * 180.02562 * 16 15 13 34 34 H 1.07996 * 120.03050 * 179.97438 * 21 11 10 35 35 H 1.08003 * 119.96708 * 180.02562 * 22 21 11 36 36 H 1.09000 * 115.55091 * 34.33341 * 23 2 1 37 37 H 1.08995 * 117.50148 * 0.02562 * 24 23 2 38 38 H 1.09003 * 117.49566 * 145.02500 * 24 23 2 39 39 H 1.09005 * 117.49833 * 252.51106 * 25 24 23 40 40 H 1.08994 * 117.51855 * 107.48136 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2170 0.0641 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7181 -0.5771 3.5496 8 6 2.8612 0.4731 4.6208 9 6 4.0586 1.1490 4.7691 10 6 4.1910 2.1161 5.7461 11 6 3.1238 2.4012 6.5879 12 8 3.2529 3.3465 7.5535 13 6 2.1468 3.6550 8.2600 14 1 1.2336 3.1003 8.1029 15 6 2.1816 4.6844 9.1883 16 7 3.2939 5.3604 9.3794 17 14 0.6492 5.1112 10.1676 18 1 0.6251 4.3151 11.4210 19 1 0.6617 6.5583 10.5006 20 1 -0.5572 4.7995 9.3599 21 6 1.9244 1.7167 6.4402 22 6 1.7966 0.7548 5.4576 23 6 2.0400 -0.7213 -1.2492 24 6 2.7419 -2.0662 -1.0512 25 6 3.5551 -0.8281 -1.4341 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.6869 -1.0407 3.3641 30 1 2.0085 -1.3368 3.8775 31 1 4.8898 0.9232 4.1175 32 1 5.1250 2.6465 5.8586 33 1 3.3184 6.0803 10.0291 34 1 1.0930 1.9360 7.0936 35 1 0.8640 0.2224 5.3419 36 1 1.4311 -0.5979 -2.1448 37 1 2.8400 -2.4374 -0.0311 38 1 2.5948 -2.8282 -1.8167 39 1 3.9429 -0.7754 -2.4515 40 1 4.1883 -0.3841 -0.6661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171797810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:28 Heat of formation + Delta-G solvation = -70.377219 kcal Electronic energy + Delta-G solvation = -22171.082752 eV Core-core repulsion = 18724.467822 eV Total energy + Delta-G solvation = -3446.614929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59957 -39.04053 -37.94374 -36.60263 -35.65204 -32.54680 -31.86212 -31.08892 -30.17327 -26.95849 -25.25016 -24.33084 -22.68049 -22.01535 -21.92722 -20.42479 -19.92551 -18.00035 -17.59695 -17.04683 -16.56304 -16.06621 -15.50559 -14.70533 -14.61013 -14.50590 -14.38439 -13.66158 -13.58759 -13.50373 -12.96773 -12.83938 -12.71889 -12.49755 -12.14698 -11.90193 -11.71413 -11.55372 -11.45172 -11.27563 -10.99556 -10.89243 -10.79100 -10.63212 -10.46477 -10.43374 -10.29768 -10.04029 -9.33744 -8.83304 -8.17420 -7.20213 -6.45339 -4.03926 2.12409 2.23532 2.41025 2.84266 3.13155 3.14556 3.19138 3.53507 3.96840 4.29505 4.52189 4.59262 4.69706 4.86810 4.89047 5.07735 5.07848 5.16993 5.21107 5.22946 5.30325 5.42425 5.55813 5.61462 5.65965 5.68213 5.71275 5.82394 5.85649 5.93223 5.98570 6.20246 6.39849 6.54603 6.69638 6.89714 7.04249 7.21792 7.33971 7.43512 7.81077 7.96359 7.99802 9.00250 9.69943 10.72622 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032205 B = 0.002892 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.220173 B = 9678.309647 C =10056.182645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 H 0.088 0.912 4 O -0.358 6.358 5 C 0.453 3.547 6 O -0.490 6.490 7 C -0.050 4.050 8 C -0.183 4.183 9 C -0.057 4.057 10 C -0.192 4.192 11 C 0.159 3.841 12 O -0.176 6.176 13 C -0.392 4.392 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.233 4.233 22 C -0.053 4.053 23 C -0.160 4.160 24 C -0.165 4.165 25 C -0.178 4.178 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.270 0.730 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -13.989 -17.667 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 H 0.105 0.895 4 O -0.276 6.276 5 C 0.295 3.705 6 O -0.375 6.375 7 C -0.088 4.088 8 C -0.184 4.184 9 C -0.075 4.075 10 C -0.211 4.211 11 C 0.105 3.895 12 O -0.079 6.079 13 C -0.468 4.468 14 H 0.110 0.890 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.252 4.252 22 C -0.071 4.071 23 C -0.178 4.178 24 C -0.201 4.201 25 C -0.215 4.215 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.712 -13.262 -17.468 22.099 hybrid contribution -0.915 0.400 0.350 1.058 sum -3.626 -12.861 -17.118 21.716 Atomic orbital electron populations 1.22137 0.94075 1.02908 1.03103 1.22056 0.94210 0.96521 0.81354 0.89456 1.86554 1.77523 1.42927 1.20588 1.24208 0.74708 0.86418 0.85132 1.90696 1.46543 1.16627 1.83682 1.20094 1.03120 0.97761 0.87804 1.18637 0.95893 1.03472 1.00384 1.20419 0.96072 0.94623 0.96388 1.20160 0.98895 1.03111 0.98934 1.19396 0.93054 0.88932 0.88104 1.83974 1.35809 1.48034 1.40089 1.21343 0.89412 1.17480 1.18561 0.89017 1.25300 0.98748 0.95154 0.97311 1.70040 1.26067 1.20433 1.33137 0.85704 0.79995 0.78174 0.79526 1.19851 1.20231 1.19168 1.21110 0.99204 1.01574 1.03347 1.20530 0.96461 0.96067 0.94090 1.22433 0.95674 1.01863 0.97855 1.22909 1.03119 0.90640 1.03470 1.22976 0.93129 1.02727 1.02664 0.90910 0.91545 0.91723 0.87913 0.87897 0.87238 0.86413 0.91988 0.85466 0.87669 0.86274 0.87509 0.88959 0.88663 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.53 37.16 0.35 -1.23 16 2 C 0.11 1.24 2.92 -26.73 -0.08 1.16 16 3 H 0.09 1.10 7.16 -51.93 -0.37 0.73 16 4 O -0.36 -4.36 8.23 -39.25 -0.32 -4.68 16 5 C 0.45 6.54 7.92 36.00 0.29 6.83 16 6 O -0.49 -8.98 15.25 -18.75 -0.29 -9.26 16 7 C -0.05 -0.65 5.94 -29.04 -0.17 -0.82 16 8 C -0.18 -3.16 4.38 -104.58 -0.46 -3.62 16 9 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 10 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 11 C 0.16 3.93 6.65 -39.10 -0.26 3.67 16 12 O -0.18 -5.10 9.76 0.07 0.00 -5.10 16 13 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 14 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 17 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 22 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16 23 C -0.16 -1.37 5.71 -90.62 -0.52 -1.89 16 24 C -0.16 -1.33 9.88 -26.73 -0.26 -1.59 16 25 C -0.18 -1.49 10.19 -26.73 -0.27 -1.76 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 32 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 35 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.12 0.82 8.11 -51.93 -0.42 0.40 16 37 H 0.11 0.95 7.04 -51.93 -0.37 0.59 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -32.53 345.08 -7.89 -40.42 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.51 Total: 4.44 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.71 Total: -21.96 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.76 Total: -24.73 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.61 Total: -19.04 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.53 -7.89 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171797810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.960 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds