Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47524 * 2 1 4 4 O 1.42901 * 109.47337 * 240.00545 * 2 1 3 5 5 C 1.35899 * 117.00435 * 84.85172 * 4 2 1 6 6 C 1.38732 * 120.05659 * 174.41800 * 5 4 2 7 7 C 1.38147 * 119.93981 * 179.74577 * 6 5 4 8 8 C 1.38272 * 120.05761 * 0.50742 * 7 6 5 9 9 C 1.38269 * 120.11002 * 359.76910 * 8 7 6 10 10 C 1.38144 * 120.05189 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47417 * 120.00212 * 2 1 3 12 12 O 1.20830 * 119.99997 * 115.53558 * 11 2 1 13 13 O 1.34227 * 119.99909 * 295.54610 * 11 2 1 14 14 C 1.45202 * 116.99719 * 185.11322 * 13 11 2 15 15 C 1.52996 * 109.46745 * 184.86192 * 14 13 11 16 16 C 1.50708 * 115.55109 * 304.68932 * 15 14 13 17 17 H 1.07994 * 119.99760 * 95.19957 * 16 15 14 18 18 C 1.37877 * 120.00113 * 275.20787 * 16 15 14 19 19 N 1.31513 * 120.00047 * 5.24401 * 18 16 15 20 20 Si 1.86796 * 120.00111 * 185.25512 * 18 16 15 21 21 H 1.48502 * 109.47335 * 59.99121 * 20 18 16 22 22 H 1.48496 * 109.47307 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46921 * 299.99560 * 20 18 16 24 24 C 1.53000 * 117.49854 * 159.02689 * 15 14 13 25 25 C 1.52994 * 117.50405 * 90.36530 * 15 14 13 26 26 H 1.09001 * 109.47512 * 305.04619 * 1 2 3 27 27 H 1.09006 * 109.47111 * 65.04817 * 1 2 3 28 28 H 1.08998 * 109.47442 * 185.04427 * 1 2 3 29 29 H 1.07996 * 120.02743 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.97171 * 180.23185 * 7 6 5 31 31 H 1.07992 * 119.94362 * 179.74584 * 8 7 6 32 32 H 1.07994 * 119.97204 * 179.97438 * 9 8 7 33 33 H 1.08000 * 120.02343 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.46890 * 304.85889 * 14 13 11 35 35 H 1.09001 * 109.47626 * 64.86033 * 14 13 11 36 36 H 0.96999 * 120.00163 * 185.00158 * 19 18 16 37 37 H 1.09004 * 117.49932 * 359.97438 * 24 15 14 38 38 H 1.09001 * 117.50341 * 145.01940 * 24 15 14 39 39 H 1.09002 * 117.50104 * 214.97861 * 25 15 14 40 40 H 1.09005 * 117.49593 * 359.97301 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1096 0.0620 -2.3049 6 6 2.6729 -0.4953 -3.4437 7 6 2.7719 0.2528 -4.6008 8 6 2.3197 1.5593 -4.6216 9 6 1.7631 2.1188 -3.4863 10 6 1.6570 1.3732 -2.3282 11 6 2.0323 -0.7105 1.2304 12 8 2.6590 -1.7378 1.1213 13 8 1.7835 -0.2021 2.4475 14 6 2.3933 -0.8753 3.5803 15 6 1.9026 -0.2334 4.8796 16 6 2.1166 1.2542 4.9909 17 1 1.3240 1.9355 4.7192 18 6 3.3244 1.7453 5.4394 19 7 4.3235 0.9222 5.6718 20 14 3.5415 3.5796 5.7174 21 1 2.5648 4.0453 6.7345 22 1 4.9210 3.8477 6.1973 23 1 3.3112 4.3043 4.4418 24 6 2.0128 -1.0608 6.1618 25 6 0.6431 -0.8161 5.5237 26 1 -0.3634 0.5901 0.8413 27 1 -0.3634 0.4335 -0.9318 28 1 -0.3634 -1.0236 0.0904 29 1 3.0304 -1.5143 -3.4266 30 1 3.2070 -0.1817 -5.4887 31 1 2.4017 2.1438 -5.5260 32 1 1.4110 3.1396 -3.5049 33 1 1.2225 1.8108 -1.4416 34 1 2.1164 -1.9295 3.5686 35 1 3.4776 -0.7838 3.5168 36 1 5.1488 1.2574 6.0557 37 1 2.4345 -2.0626 6.0797 38 1 2.2396 -0.5292 7.0860 39 1 -0.0306 -0.1235 6.0283 40 1 0.1638 -1.6565 5.0216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174740216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -70.152043 kcal Electronic energy + Delta-G solvation = -22657.529132 eV Core-core repulsion = 19210.923967 eV Total energy + Delta-G solvation = -3446.605165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66910 -39.55856 -37.61710 -36.69040 -35.28419 -32.37775 -31.99196 -30.93580 -29.76397 -27.07409 -25.43002 -24.62035 -22.97917 -22.31093 -21.21940 -20.19378 -19.32457 -18.53262 -17.04263 -16.82518 -16.26677 -15.92729 -15.75595 -15.08659 -15.05985 -14.60811 -14.46128 -13.97315 -13.59435 -13.36844 -13.06719 -12.95863 -12.50688 -12.29681 -12.09164 -11.80238 -11.70784 -11.59345 -11.16103 -11.02794 -10.93902 -10.86865 -10.57298 -10.35311 -9.99806 -9.91562 -9.58982 -9.15367 -8.89891 -8.50113 -8.34331 -8.24508 -6.09790 -4.16007 1.18129 1.29203 2.44941 2.60586 3.27686 3.33311 3.35077 3.64538 3.66660 4.36376 4.60067 4.73376 4.77798 4.82947 4.96861 5.00324 5.19363 5.21519 5.25893 5.33160 5.47443 5.56721 5.63027 5.85410 5.92129 6.01020 6.16137 6.17989 6.25055 6.26869 6.37183 6.45346 6.57879 6.62653 6.68523 6.97981 7.09957 7.26443 7.29728 7.41366 7.82960 8.25277 8.37563 8.85346 9.50194 10.99500 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003884 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.651988 B = 7207.731219 C = 8023.040934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.110 0.890 4 O -0.289 6.289 5 C 0.134 3.866 6 C -0.151 4.151 7 C -0.082 4.082 8 C -0.162 4.162 9 C -0.079 4.079 10 C -0.211 4.211 11 C 0.458 3.542 12 O -0.502 6.502 13 O -0.326 6.326 14 C 0.117 3.883 15 C 0.037 3.963 16 C -0.487 4.487 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.144 4.144 25 C -0.207 4.207 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 0.612 -16.116 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.128 0.872 4 O -0.203 6.203 5 C 0.089 3.911 6 C -0.169 4.169 7 C -0.100 4.100 8 C -0.181 4.181 9 C -0.097 4.097 10 C -0.230 4.230 11 C 0.299 3.701 12 O -0.390 6.390 13 O -0.241 6.241 14 C 0.044 3.956 15 C 0.036 3.964 16 C -0.525 4.525 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.519 5.519 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.182 4.182 25 C -0.244 4.244 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.465 0.086 -16.034 16.940 hybrid contribution 0.339 1.001 0.355 1.114 sum -5.126 1.087 -15.679 16.532 Atomic orbital electron populations 1.22295 0.91734 1.04529 1.04356 1.21682 0.96147 0.96776 0.81851 0.87204 1.86155 1.81073 1.37266 1.15769 1.19081 0.95104 0.90392 0.86519 1.20486 1.03596 1.01590 0.91240 1.20963 0.97973 0.94047 0.97026 1.21065 1.02400 0.95863 0.98730 1.20963 0.97132 0.99419 0.92228 1.21406 1.06872 0.94285 1.00431 1.22805 0.77791 0.83751 0.85725 1.90646 1.37384 1.23485 1.87480 1.86510 1.67361 1.56257 1.13976 1.22936 0.97808 0.92684 0.82216 1.18765 0.95379 0.94889 0.87339 1.20334 0.98591 0.88674 1.44894 0.91893 1.24995 0.95391 0.97798 0.95206 1.69982 1.04071 1.35032 1.42796 0.86667 0.77149 0.85546 0.78728 1.20156 1.21279 1.20117 1.22541 0.97963 0.98991 0.98676 1.23064 0.91855 1.02512 1.06988 0.88866 0.90639 0.90903 0.85050 0.85409 0.86007 0.85703 0.84884 0.93979 0.90587 0.92806 0.91586 0.89348 0.89985 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.10 37.15 0.34 -1.75 16 2 C 0.09 1.41 2.75 -27.89 -0.08 1.34 16 3 H 0.11 1.50 6.31 -51.93 -0.33 1.18 16 4 O -0.29 -4.60 9.34 -39.34 -0.37 -4.97 16 5 C 0.13 1.82 6.58 -39.22 -0.26 1.56 16 6 C -0.15 -1.80 9.99 -39.43 -0.39 -2.20 16 7 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 8 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 9 C -0.08 -0.79 10.04 -39.60 -0.40 -1.18 16 10 C -0.21 -2.45 8.21 -39.43 -0.32 -2.78 16 11 C 0.46 9.05 7.28 36.01 0.26 9.31 16 12 O -0.50 -11.30 16.16 -25.47 -0.41 -11.72 16 13 O -0.33 -7.06 9.96 -39.25 -0.39 -7.45 16 14 C 0.12 2.73 5.44 37.16 0.20 2.94 16 15 C 0.04 0.89 1.67 -155.66 -0.26 0.63 16 16 C -0.49 -12.95 8.58 -34.44 -0.30 -13.24 16 17 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 18 C 0.07 1.85 5.40 -17.82 -0.10 1.76 16 19 N -0.88 -24.53 12.91 55.43 0.72 -23.82 16 20 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.14 -3.28 9.45 -26.69 -0.25 -3.54 16 25 C -0.21 -4.39 9.93 -26.70 -0.27 -4.66 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 0.76 6.98 -51.93 -0.36 0.40 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.39 5.50 -52.49 -0.29 1.10 16 34 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 35 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 36 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -30.54 345.80 -8.46 -39.01 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.59 Total: 3.01 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.61 Total: -14.91 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.72 Total: -23.82 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.17 Total: -24.14 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.54 -8.46 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174740216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.146 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds