Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47524 * 2 1 4 4 O 1.42901 * 109.47337 * 240.00545 * 2 1 3 5 5 C 1.35899 * 117.00435 * 84.85172 * 4 2 1 6 6 C 1.38732 * 120.05659 * 174.41800 * 5 4 2 7 7 C 1.38147 * 119.93981 * 179.74577 * 6 5 4 8 8 C 1.38272 * 120.05761 * 0.50742 * 7 6 5 9 9 C 1.38269 * 120.11002 * 359.76910 * 8 7 6 10 10 C 1.38144 * 120.05189 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47417 * 120.00212 * 2 1 3 12 12 O 1.20830 * 119.99997 * 115.53558 * 11 2 1 13 13 O 1.34227 * 119.99909 * 295.54610 * 11 2 1 14 14 C 1.45202 * 116.99719 * 185.11322 * 13 11 2 15 15 C 1.52996 * 109.46745 * 184.86192 * 14 13 11 16 16 C 1.50708 * 115.55109 * 304.68932 * 15 14 13 17 17 H 1.07994 * 119.99760 * 95.19957 * 16 15 14 18 18 C 1.37877 * 120.00113 * 275.20787 * 16 15 14 19 19 N 1.31513 * 120.00047 * 5.24401 * 18 16 15 20 20 Si 1.86796 * 120.00111 * 185.25512 * 18 16 15 21 21 H 1.48502 * 109.47335 * 59.99121 * 20 18 16 22 22 H 1.48496 * 109.47307 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46921 * 299.99560 * 20 18 16 24 24 C 1.53000 * 117.49854 * 159.02689 * 15 14 13 25 25 C 1.52994 * 117.50405 * 90.36530 * 15 14 13 26 26 H 1.09001 * 109.47512 * 305.04619 * 1 2 3 27 27 H 1.09006 * 109.47111 * 65.04817 * 1 2 3 28 28 H 1.08998 * 109.47442 * 185.04427 * 1 2 3 29 29 H 1.07996 * 120.02743 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.97171 * 180.23185 * 7 6 5 31 31 H 1.07992 * 119.94362 * 179.74584 * 8 7 6 32 32 H 1.07994 * 119.97204 * 179.97438 * 9 8 7 33 33 H 1.08000 * 120.02343 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.46890 * 304.85889 * 14 13 11 35 35 H 1.09001 * 109.47626 * 64.86033 * 14 13 11 36 36 H 0.96999 * 120.00163 * 185.00158 * 19 18 16 37 37 H 1.09004 * 117.49932 * 359.97438 * 24 15 14 38 38 H 1.09001 * 117.50341 * 145.01940 * 24 15 14 39 39 H 1.09002 * 117.50104 * 214.97861 * 25 15 14 40 40 H 1.09005 * 117.49593 * 359.97301 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1096 0.0620 -2.3049 6 6 2.6729 -0.4953 -3.4437 7 6 2.7719 0.2528 -4.6008 8 6 2.3197 1.5593 -4.6216 9 6 1.7631 2.1188 -3.4863 10 6 1.6570 1.3732 -2.3282 11 6 2.0323 -0.7105 1.2304 12 8 2.6590 -1.7378 1.1213 13 8 1.7835 -0.2021 2.4475 14 6 2.3933 -0.8753 3.5803 15 6 1.9026 -0.2334 4.8796 16 6 2.1166 1.2542 4.9909 17 1 1.3240 1.9355 4.7192 18 6 3.3244 1.7453 5.4394 19 7 4.3235 0.9222 5.6718 20 14 3.5415 3.5796 5.7174 21 1 2.5648 4.0453 6.7345 22 1 4.9210 3.8477 6.1973 23 1 3.3112 4.3043 4.4418 24 6 2.0128 -1.0608 6.1618 25 6 0.6431 -0.8161 5.5237 26 1 -0.3634 0.5901 0.8413 27 1 -0.3634 0.4335 -0.9318 28 1 -0.3634 -1.0236 0.0904 29 1 3.0304 -1.5143 -3.4266 30 1 3.2070 -0.1817 -5.4887 31 1 2.4017 2.1438 -5.5260 32 1 1.4110 3.1396 -3.5049 33 1 1.2225 1.8108 -1.4416 34 1 2.1164 -1.9295 3.5686 35 1 3.4776 -0.7838 3.5168 36 1 5.1488 1.2574 6.0557 37 1 2.4345 -2.0626 6.0797 38 1 2.2396 -0.5292 7.0860 39 1 -0.0306 -0.1235 6.0283 40 1 0.1638 -1.6565 5.0216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174740216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -84.860764 kcal Electronic energy + Delta-G solvation = -22658.166950 eV Core-core repulsion = 19210.923967 eV Total energy + Delta-G solvation = -3447.242983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94256 -40.89007 -38.81957 -38.25263 -37.01874 -34.02112 -33.45734 -31.76449 -30.63389 -28.82899 -27.38248 -25.87602 -23.90154 -23.29606 -22.96014 -21.55492 -21.21826 -19.58322 -18.54741 -18.45905 -17.64876 -17.45584 -16.82992 -16.62592 -16.30755 -16.21724 -15.67141 -15.27880 -14.88612 -14.46358 -14.37645 -14.18910 -13.97001 -13.63392 -13.46706 -13.29445 -12.99540 -12.85995 -12.77671 -12.46190 -12.40136 -12.17967 -12.11816 -11.83790 -11.73073 -11.61793 -11.33794 -10.80556 -10.49153 -10.09172 -9.95355 -9.23515 -8.12661 -6.24576 0.38395 0.44547 0.99204 1.16915 1.44579 1.44827 1.52630 2.40822 2.44920 2.83600 3.15871 3.29768 3.53255 3.65046 3.74474 3.91788 3.99425 4.10573 4.28855 4.33901 4.38681 4.43102 4.51366 4.58599 4.62456 4.64623 4.74674 4.81045 4.95653 5.06169 5.09033 5.15925 5.33490 5.34477 5.47770 5.54827 5.59772 5.60532 5.75705 5.81522 6.30416 6.34693 6.66826 6.81037 7.44584 8.96039 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003884 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.651988 B = 7207.731219 C = 8023.040934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 H 0.125 0.875 4 O -0.315 6.315 5 C 0.102 3.898 6 C -0.170 4.170 7 C -0.081 4.081 8 C -0.158 4.158 9 C -0.083 4.083 10 C -0.219 4.219 11 C 0.454 3.546 12 O -0.536 6.536 13 O -0.331 6.331 14 C 0.127 3.873 15 C 0.004 3.996 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.023 3.977 19 N -0.912 5.912 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.270 1.270 24 C -0.147 4.147 25 C -0.178 4.178 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 2.269 -17.864 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.143 0.857 4 O -0.230 6.230 5 C 0.058 3.942 6 C -0.188 4.188 7 C -0.099 4.099 8 C -0.176 4.176 9 C -0.100 4.100 10 C -0.238 4.238 11 C 0.297 3.703 12 O -0.426 6.426 13 O -0.246 6.246 14 C 0.053 3.947 15 C 0.004 3.996 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.177 4.177 19 N -0.550 5.550 20 Si 0.776 3.224 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.195 1.195 24 C -0.185 4.185 25 C -0.215 4.215 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.145 0.855 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.819 1.754 -17.798 19.140 hybrid contribution 0.768 0.475 0.769 1.186 sum -6.051 2.229 -17.029 18.209 Atomic orbital electron populations 1.22289 0.89138 1.04629 1.05959 1.21757 0.97844 0.96251 0.79840 0.85746 1.86102 1.81978 1.38435 1.16476 1.19388 0.97281 0.91492 0.86055 1.20715 1.04177 1.02003 0.91925 1.21318 0.97312 0.94272 0.96995 1.21498 1.00714 0.95730 0.99630 1.21348 0.96526 1.00474 0.91687 1.21580 1.06934 0.93639 1.01601 1.23823 0.76754 0.83452 0.86230 1.90618 1.38996 1.25211 1.87795 1.86510 1.67295 1.56311 1.14495 1.22597 0.95831 0.93257 0.82972 1.18867 0.98335 0.94342 0.88065 1.20613 0.98518 0.90008 1.44532 0.92233 1.25712 0.95153 1.01701 0.95152 1.70102 1.04392 1.36731 1.43778 0.85724 0.76985 0.80815 0.78843 1.19298 1.21393 1.19532 1.22482 0.99610 0.99025 0.97383 1.23077 0.90816 1.02579 1.05010 0.88169 0.88157 0.91405 0.85479 0.82733 0.82997 0.83095 0.84093 0.93112 0.94027 0.93060 0.90579 0.91010 0.89279 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.10 71.98 0.66 -3.09 16 2 C 0.10 3.03 2.75 29.85 0.08 3.11 16 3 H 0.13 3.33 6.31 -2.39 -0.02 3.32 16 4 O -0.32 -10.16 9.34 -73.38 -0.69 -10.85 16 5 C 0.10 2.71 6.58 22.51 0.15 2.86 16 6 C -0.17 -3.98 9.99 22.37 0.22 -3.76 16 7 C -0.08 -1.40 10.04 22.26 0.22 -1.17 16 8 C -0.16 -2.40 10.04 22.29 0.22 -2.18 16 9 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 10 C -0.22 -4.71 8.21 22.36 0.18 -4.53 16 11 C 0.45 18.29 7.28 71.24 0.52 18.81 16 12 O -0.54 -25.01 16.16 28.37 0.46 -24.55 16 13 O -0.33 -14.52 9.96 -51.38 -0.51 -15.03 16 14 C 0.13 6.09 5.44 71.98 0.39 6.48 16 15 C 0.00 0.21 1.67 -52.93 -0.09 0.12 16 16 C -0.50 -26.60 8.58 25.60 0.22 -26.38 16 17 H 0.06 3.13 7.82 -2.91 -0.02 3.10 16 18 C 0.02 1.23 5.40 84.65 0.46 1.69 16 19 N -0.91 -51.74 12.91 21.45 0.28 -51.47 16 20 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 C -0.15 -6.71 9.45 30.62 0.29 -6.42 16 25 C -0.18 -7.30 9.93 30.62 0.30 -6.99 16 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.10 1.81 6.98 -2.38 -0.02 1.79 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.14 2.67 5.50 -2.91 -0.02 2.65 16 34 H 0.05 2.29 7.92 -2.39 -0.02 2.27 16 35 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 37 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 38 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -66.99 345.80 6.65 -60.34 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.03 Total: 19.77 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.06 Total: -22.61 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.28 Total: -51.47 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.74 Total: -50.43 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.99 6.65 -60.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174740216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.524 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds