Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46641 * 2 1 4 4 O 1.42895 * 109.47252 * 120.00305 * 2 1 3 5 5 C 1.35898 * 117.00068 * 276.26754 * 4 2 1 6 6 C 1.38741 * 120.05388 * 356.88430 * 5 4 2 7 7 C 1.38143 * 119.94325 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05498 * 0.02562 * 7 6 5 9 9 C 1.38267 * 120.11457 * 0.27405 * 8 7 6 10 10 C 1.38140 * 120.05029 * 359.44871 * 9 8 7 11 11 C 1.50699 * 109.46895 * 240.00392 * 2 1 3 12 12 O 1.20831 * 119.99953 * 244.99879 * 11 2 1 13 13 O 1.34234 * 120.00413 * 64.99653 * 11 2 1 14 14 C 1.45196 * 117.00062 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.46834 * 180.02562 * 14 13 11 16 16 C 1.50701 * 115.55103 * 59.06843 * 15 14 13 17 17 H 1.08006 * 119.99324 * 265.64277 * 16 15 14 18 18 C 1.37870 * 120.00472 * 85.64864 * 16 15 14 19 19 N 1.31524 * 119.99593 * 4.84061 * 18 16 15 20 20 Si 1.86795 * 120.00220 * 184.84581 * 18 16 15 21 21 H 1.48502 * 109.47333 * 89.99859 * 20 18 16 22 22 H 1.48505 * 109.47268 * 209.99507 * 20 18 16 23 23 H 1.48499 * 109.47294 * 329.99520 * 20 18 16 24 24 C 1.53002 * 117.49868 * 273.38977 * 15 14 13 25 25 C 1.53009 * 117.49600 * 204.73555 * 15 14 13 26 26 H 1.09005 * 109.47157 * 299.99364 * 1 2 3 27 27 H 1.08994 * 109.47794 * 59.99849 * 1 2 3 28 28 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.02521 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.97194 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.94187 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.96994 * 179.70434 * 9 8 7 33 33 H 1.08003 * 120.02613 * 180.28004 * 10 9 8 34 34 H 1.09000 * 109.46822 * 299.99777 * 14 13 11 35 35 H 1.09001 * 109.47306 * 59.99794 * 14 13 11 36 36 H 0.97000 * 119.99500 * 180.02562 * 19 18 16 37 37 H 1.09002 * 117.49558 * 0.02562 * 24 15 14 38 38 H 1.09005 * 117.49646 * 145.01849 * 24 15 14 39 39 H 1.09002 * 117.49589 * 214.97950 * 25 15 14 40 40 H 1.08998 * 117.49832 * 359.97245 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0874 0.0558 2.3105 6 6 1.7778 1.4081 2.2955 7 6 1.8605 2.1473 3.4596 8 6 2.2518 1.5406 4.6388 9 6 2.5669 0.1944 4.6551 10 6 2.4803 -0.5504 3.4949 11 6 2.0323 -0.7103 -1.2305 12 8 2.6506 -1.7428 -1.1220 13 8 1.7928 -0.1962 -2.4471 14 6 2.3059 -0.9343 -3.5874 15 6 1.9380 -0.1995 -4.8779 16 6 2.4573 1.2105 -4.9937 17 1 1.8351 2.0413 -4.6953 18 6 3.7267 1.4399 -5.4806 19 7 4.4485 0.4377 -5.9327 20 14 4.4212 3.1738 -5.4979 21 1 5.1327 3.4348 -4.2208 22 1 5.3704 3.3156 -6.6312 23 1 3.3129 4.1495 -5.6555 24 6 0.5731 -0.5029 -5.4991 25 6 1.8495 -1.0274 -6.1616 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.4717 1.8823 1.3747 30 1 1.6200 3.2001 3.4484 31 1 2.3162 2.1204 5.5478 32 1 2.8769 -0.2760 5.5764 33 1 2.7221 -1.6029 3.5090 34 1 3.3903 -1.0130 -3.5110 35 1 1.8691 -1.9329 -3.6002 36 1 5.3417 0.5990 -6.2749 37 1 -0.0629 -1.2258 -4.9881 38 1 0.0509 0.3173 -5.9918 39 1 2.1665 -0.5521 -7.0899 40 1 2.0538 -2.0954 -6.0867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174740230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -69.473546 kcal Electronic energy + Delta-G solvation = -22645.343014 eV Core-core repulsion = 19198.767271 eV Total energy + Delta-G solvation = -3446.575743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68848 -39.58060 -37.63510 -36.69255 -35.29849 -32.38064 -31.97892 -30.96703 -29.76900 -27.10935 -25.44573 -24.66502 -22.98946 -22.31843 -21.18368 -20.19399 -19.32441 -18.57403 -17.08515 -16.82564 -16.23105 -15.95934 -15.80708 -15.16998 -15.05261 -14.63997 -14.41081 -13.97402 -13.59344 -13.33031 -13.10777 -12.99832 -12.52803 -12.28054 -12.12998 -11.80833 -11.74690 -11.61241 -11.24619 -11.01705 -10.91184 -10.83240 -10.56723 -10.31188 -9.99863 -9.94953 -9.53137 -9.17017 -8.98381 -8.47569 -8.35071 -8.22894 -6.09672 -4.16026 1.16832 1.28596 2.42915 2.57320 3.26390 3.33693 3.35871 3.60300 3.67114 4.35889 4.56883 4.69693 4.76837 4.79937 4.94722 5.01117 5.19373 5.20290 5.25063 5.34268 5.46781 5.54735 5.60717 5.84019 5.91082 5.98414 6.15334 6.17401 6.23761 6.25461 6.36039 6.44159 6.56819 6.62037 6.70017 7.01514 7.10046 7.24742 7.29589 7.48234 7.82796 8.24343 8.36624 8.85688 9.50039 10.99011 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.003871 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.713987 B = 7231.109727 C = 8030.956829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.111 0.889 4 O -0.289 6.289 5 C 0.135 3.865 6 C -0.213 4.213 7 C -0.078 4.078 8 C -0.163 4.163 9 C -0.081 4.081 10 C -0.151 4.151 11 C 0.458 3.542 12 O -0.500 6.500 13 O -0.328 6.328 14 C 0.117 3.883 15 C 0.033 3.967 16 C -0.489 4.489 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.207 4.207 25 C -0.137 4.137 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 1.353 16.717 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.128 0.872 4 O -0.202 6.202 5 C 0.090 3.910 6 C -0.231 4.231 7 C -0.097 4.097 8 C -0.181 4.181 9 C -0.100 4.100 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.388 6.388 13 O -0.243 6.243 14 C 0.044 3.956 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.244 4.244 25 C -0.175 4.175 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.253 0.784 16.549 17.708 hybrid contribution 0.633 0.916 -0.158 1.125 sum -5.620 1.700 16.391 17.411 Atomic orbital electron populations 1.22276 0.91682 1.04380 1.04513 1.21680 0.96081 0.96948 0.81878 0.87159 1.86166 1.80738 1.37880 1.15430 1.19077 0.95455 0.90215 0.86260 1.21382 1.08040 0.93468 1.00215 1.20959 0.97060 0.99625 0.92007 1.21064 1.03509 0.95239 0.98302 1.20959 0.97749 0.93997 0.97245 1.20470 1.05196 1.01076 0.90239 1.22795 0.77742 0.83879 0.85690 1.90653 1.37245 1.23461 1.87472 1.86503 1.71207 1.52833 1.13777 1.22962 0.98900 0.91782 0.81961 1.18780 0.94384 0.96069 0.87540 1.20361 0.99379 0.89779 1.43133 0.91866 1.25022 0.96986 0.97022 0.94472 1.70007 1.10585 1.30707 1.40453 0.86589 0.79025 0.84722 0.77678 1.20592 1.21195 1.19717 1.23049 0.91693 1.02719 1.06970 1.22518 0.99337 0.97057 0.98559 0.90664 0.88874 0.90874 0.84896 0.85694 0.86001 0.85403 0.85060 0.90919 0.93911 0.92885 0.91593 0.90040 0.88997 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.25 37.16 0.34 -1.69 16 2 C 0.09 1.37 2.77 -27.88 -0.08 1.29 16 3 H 0.11 1.47 5.97 -51.93 -0.31 1.16 16 4 O -0.29 -4.55 9.34 -39.32 -0.37 -4.92 16 5 C 0.14 1.81 6.55 -39.22 -0.26 1.55 16 6 C -0.21 -2.44 8.37 -39.43 -0.33 -2.77 16 7 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 8 C -0.16 -1.49 10.04 -39.56 -0.40 -1.89 16 9 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 10 C -0.15 -1.78 9.99 -39.44 -0.39 -2.18 16 11 C 0.46 8.96 7.29 36.00 0.26 9.22 16 12 O -0.50 -11.25 16.26 -25.47 -0.41 -11.66 16 13 O -0.33 -7.00 10.04 -39.27 -0.39 -7.39 16 14 C 0.12 2.72 5.31 37.16 0.20 2.92 16 15 C 0.03 0.80 1.74 -155.66 -0.27 0.53 16 16 C -0.49 -13.06 8.67 -34.44 -0.30 -13.35 16 17 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 18 C 0.07 1.84 5.43 -17.82 -0.10 1.74 16 19 N -0.88 -24.58 12.62 55.43 0.70 -23.88 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.21 -4.41 9.94 -26.69 -0.27 -4.67 16 25 C -0.14 -3.15 9.12 -26.69 -0.24 -3.39 16 26 H 0.07 0.74 7.38 -51.93 -0.38 0.36 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.13 1.38 5.70 -52.49 -0.30 1.08 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.07 1.86 8.13 -51.93 -0.42 1.44 16 35 H 0.04 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.09 2.25 8.14 -51.93 -0.42 1.82 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -30.70 346.17 -8.51 -39.21 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.61 Total: 2.67 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.62 Total: -15.04 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.70 Total: -23.88 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.18 Total: -23.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.70 -8.51 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174740230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.260 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds